Wall clock time and date at job start Tue Mar 31 2020 04:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47038 * 2 1 4 4 H 1.09004 * 109.47483 * 54.36840 * 3 2 1 5 5 N 1.46499 * 109.46665 * 294.36910 * 3 2 1 6 6 C 1.34776 * 119.99952 * 85.00276 * 5 3 2 7 7 O 1.21284 * 120.00111 * 359.97438 * 6 5 3 8 8 C 1.50701 * 119.99925 * 179.97438 * 6 5 3 9 9 C 1.52996 * 109.47341 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47341 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99724 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00039 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00172 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00204 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46807 * 60.00247 * 14 12 10 16 16 H 1.48493 * 109.47496 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47129 * 300.00518 * 14 12 10 18 18 C 1.50699 * 109.47244 * 174.36709 * 3 2 1 19 19 O 1.21283 * 119.99487 * 98.76745 * 18 3 2 20 20 N 1.34768 * 120.00245 * 278.77252 * 18 3 2 21 21 C 1.47152 * 120.98272 * 354.73242 * 20 18 3 22 22 C 1.53713 * 108.16102 * 129.43543 * 21 20 18 23 23 O 1.42967 * 109.14843 * 52.53705 * 22 21 20 24 24 C 1.42960 * 114.16693 * 297.29293 * 23 22 21 25 25 C 1.47156 * 120.98112 * 175.01973 * 20 18 3 26 26 H 1.09008 * 109.46830 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47333 * 299.99801 * 1 2 3 28 28 H 1.08995 * 109.47268 * 60.00533 * 1 2 3 29 29 H 1.08996 * 109.47262 * 239.99536 * 2 1 3 30 30 H 1.09006 * 109.46841 * 119.99477 * 2 1 3 31 31 H 0.97002 * 120.00301 * 264.99295 * 5 3 2 32 32 H 1.09006 * 109.47233 * 299.99645 * 8 6 5 33 33 H 1.09000 * 109.47141 * 59.99747 * 8 6 5 34 34 H 1.09004 * 109.46851 * 299.99492 * 9 8 6 35 35 H 1.09000 * 109.47385 * 59.99681 * 9 8 6 36 36 H 0.97002 * 120.00523 * 179.97438 * 13 12 10 37 37 H 1.08995 * 109.68815 * 249.21330 * 21 20 18 38 38 H 1.09004 * 109.68049 * 9.76853 * 21 20 18 39 39 H 1.09000 * 109.65933 * 292.57615 * 22 21 20 40 40 H 1.08994 * 109.48853 * 172.40272 * 22 21 20 41 41 H 1.08997 * 109.51329 * 302.65094 * 24 23 22 42 42 H 1.08996 * 109.55229 * 182.52851 * 24 23 22 43 43 H 1.08989 * 109.68449 * 350.23544 * 25 20 18 44 44 H 1.09002 * 109.68100 * 110.75321 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9847 0.8353 5 7 1.6654 2.0928 -1.2582 6 6 0.4494 2.6592 -1.3880 7 8 -0.3350 2.6302 -0.4634 8 6 0.0642 3.3286 -2.6821 9 6 -1.3558 3.8858 -2.5652 10 6 -1.7407 4.5558 -3.8591 11 1 -1.0421 4.5819 -4.6823 12 6 -2.9847 5.1354 -3.9919 13 7 -3.8352 5.1040 -2.9893 14 14 -3.4615 5.9665 -5.5954 15 1 -3.4070 4.9767 -6.7011 16 1 -4.8399 6.5072 -5.4820 17 1 -2.5165 7.0766 -5.8777 18 6 3.5405 1.4448 0.1395 19 8 4.2405 1.5718 -0.8428 20 7 4.1045 1.3057 1.3555 21 6 3.2792 1.2654 2.5732 22 6 3.6960 0.0343 3.3938 23 8 5.1122 0.0575 3.5879 24 6 5.8701 -0.0263 2.3786 25 6 5.5643 1.1960 1.5054 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.2926 2.1158 -1.9978 32 1 0.7578 4.1434 -2.8902 33 1 0.1041 2.6015 -3.4932 34 1 -2.0497 3.0713 -2.3570 35 1 -1.3952 4.6130 -1.7542 36 1 -4.7103 5.5120 -3.0825 37 1 3.4416 2.1713 3.1570 38 1 2.2266 1.1873 2.3008 39 1 3.4166 -0.8740 2.8600 40 1 3.1955 0.0561 4.3618 41 1 5.5986 -0.9348 1.8410 42 1 6.9338 -0.0476 2.6154 43 1 6.0257 1.0720 0.5258 44 1 5.9529 2.0954 1.9830 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362024311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:10 Heat of formation + Delta-G solvation = -122.748744 kcal Electronic energy + Delta-G solvation = -24896.893547 eV Core-core repulsion = 21235.221360 eV Total energy + Delta-G solvation = -3661.672187 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.99227 -39.45201 -38.44597 -35.43634 -35.12622 -33.44194 -32.34961 -31.84022 -30.76789 -28.81961 -27.18122 -25.47016 -24.51217 -22.74755 -22.23087 -21.17506 -19.86452 -19.45902 -17.80240 -17.11805 -16.64979 -16.54343 -16.04311 -15.82543 -15.54778 -15.25738 -15.21619 -14.99759 -14.42943 -14.17156 -13.93030 -13.53665 -13.14734 -12.98640 -12.61144 -12.37303 -12.18067 -12.04859 -11.92838 -11.85694 -11.47817 -11.20842 -11.14820 -10.94363 -10.85898 -10.66829 -10.61397 -10.02021 -9.93553 -9.65505 -9.19709 -9.04161 -9.01773 -8.83071 -8.31069 -5.95619 -3.99721 2.21010 2.35967 3.19760 3.32782 3.35426 3.39766 3.41319 3.50883 4.04062 4.23436 4.48188 4.49127 4.57132 4.66984 4.75877 4.84346 4.87334 5.01036 5.11966 5.16528 5.26408 5.30949 5.39423 5.44021 5.44315 5.67382 5.71622 5.94318 5.94686 6.13557 6.24063 6.26714 6.53066 6.58482 6.59154 6.89702 6.90552 7.72742 7.74642 7.86393 7.86769 8.07219 8.39361 8.72999 9.08398 9.63757 11.15250 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.033927 B = 0.002824 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.091370 B = 9914.066854 C =10252.333912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.127 3.873 4 H 0.109 0.891 5 N -0.728 5.728 6 C 0.514 3.486 7 O -0.529 6.529 8 C -0.130 4.130 9 C 0.039 3.961 10 C -0.528 4.528 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.519 3.481 19 O -0.532 6.532 20 N -0.615 5.615 21 C 0.065 3.935 22 C 0.048 3.952 23 O -0.379 6.379 24 C 0.048 3.952 25 C 0.077 3.923 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.407 0.593 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.024 0.976 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.057 0.943 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.537 -12.668 12.787 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.018 3.982 4 H 0.126 0.874 5 N -0.385 5.385 6 C 0.303 3.697 7 O -0.404 6.404 8 C -0.170 4.170 9 C 0.002 3.998 10 C -0.566 4.566 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.529 5.529 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 C 0.307 3.693 19 O -0.407 6.407 20 N -0.351 5.351 21 C -0.058 4.058 22 C -0.030 4.030 23 O -0.297 6.297 24 C -0.029 4.029 25 C -0.046 4.046 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.243 0.757 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.128 0.872 41 H 0.075 0.925 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.225 -12.531 13.150 25.731 hybrid contribution -0.061 0.508 -1.382 1.473 sum 18.164 -12.023 11.768 24.758 Atomic orbital electron populations 1.21821 0.93183 1.01015 1.04251 1.21887 0.98371 0.93726 1.02382 1.20809 0.89995 0.96162 0.91193 0.87380 1.46086 1.18041 1.59317 1.15014 1.21565 0.79885 0.76832 0.91396 1.90666 1.50135 1.57962 1.41657 1.21884 1.03120 0.99767 0.92196 1.18885 0.87499 0.96389 0.97051 1.21196 0.99863 1.36346 0.99196 0.92656 1.25011 0.96569 0.96271 0.96474 1.69981 1.07326 1.44693 1.30896 0.86655 0.77529 0.79824 0.83943 1.20243 1.21296 1.20257 1.20856 0.90793 0.75215 0.82436 1.90687 1.64069 1.48830 1.37135 1.48077 1.07245 1.73552 1.06204 1.22704 0.96638 1.00199 0.86236 1.23085 0.82048 0.96624 1.01241 1.87981 1.17188 1.94610 1.29951 1.23001 0.97094 0.96795 0.86027 1.22314 0.80632 0.99313 1.02334 0.93179 0.91860 0.91289 0.91177 0.91475 0.75683 0.90147 0.90116 0.95774 0.95831 0.92914 0.89828 0.87956 0.92282 0.87237 0.92509 0.87460 0.87974 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.53 37.16 0.32 -1.61 16 2 C -0.12 -1.39 5.35 -26.73 -0.14 -1.53 16 3 C 0.13 1.61 1.79 -69.08 -0.12 1.49 16 4 H 0.11 1.40 5.99 -51.93 -0.31 1.09 16 5 N -0.73 -10.90 5.00 -54.93 -0.27 -11.17 16 6 C 0.51 9.62 6.43 -10.99 -0.07 9.55 16 7 O -0.53 -11.37 13.12 5.55 0.07 -11.30 16 8 C -0.13 -2.65 5.64 -27.88 -0.16 -2.80 16 9 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 10 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 11 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.33 13.29 55.43 0.74 -26.60 16 14 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C 0.52 6.37 6.94 -10.99 -0.08 6.29 16 19 O -0.53 -7.95 15.44 5.55 0.09 -7.86 16 20 N -0.62 -5.88 3.01 -172.02 -0.52 -6.40 16 21 C 0.07 0.48 6.21 -3.32 -0.02 0.46 16 22 C 0.05 0.30 7.00 37.53 0.26 0.56 16 23 O -0.38 -3.04 10.74 -35.23 -0.38 -3.42 16 24 C 0.05 0.32 6.98 37.31 0.26 0.58 16 25 C 0.08 0.62 6.62 -3.53 -0.02 0.60 16 26 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.06 0.87 7.88 -51.93 -0.41 0.46 16 28 H 0.07 1.14 5.63 -51.93 -0.29 0.85 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.58 7.51 -51.93 -0.39 0.19 16 31 H 0.41 5.74 7.75 -40.82 -0.32 5.42 16 32 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.72 5.16 -51.93 -0.27 0.45 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.90 7.12 -51.93 -0.37 0.53 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 352.49 15.07 5.31 5.31 Total: -1.00 -34.69 352.49 -7.26 -41.95 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.97 Total: 1.95 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.30 Total: 0.80 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.06 Total: -44.17 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.22 Total: -22.58 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.69 -7.26 -41.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362024311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.799 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds