Wall clock time and date at job start Tue Mar 31 2020 05:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.04485 * 2 1 4 4 O 1.43894 * 109.90955 * 238.81786 * 2 1 3 5 5 C 1.44431 * 106.99004 * 214.26536 * 4 2 1 6 6 C 1.55105 * 103.55558 * 39.73791 * 5 4 2 7 7 C 1.53573 * 109.90372 * 121.16704 * 2 1 3 8 8 C 1.52656 * 110.37947 * 3.20273 * 7 2 1 9 9 N 1.47266 * 108.44375 * 287.60616 * 8 7 2 10 10 C 1.34784 * 121.03767 * 130.45174 * 9 8 7 11 11 O 1.21585 * 119.99995 * 5.55728 * 10 9 8 12 12 N 1.34775 * 119.99665 * 185.55682 * 10 9 8 13 13 C 1.46505 * 119.99820 * 185.18743 * 12 10 9 14 14 C 1.52998 * 109.47030 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.46814 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00383 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99811 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99926 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00017 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47295 * 90.00037 * 19 17 15 21 21 H 1.48507 * 109.47216 * 210.00360 * 19 17 15 22 22 H 1.48503 * 109.46833 * 329.99628 * 19 17 15 23 23 C 1.47152 * 117.91841 * 310.47458 * 9 8 7 24 24 C 1.53288 * 108.47916 * 51.09441 * 23 9 8 25 25 O 1.42224 * 110.64911 * 240.15402 * 7 2 1 26 26 H 1.09007 * 109.47285 * 306.32783 * 1 2 3 27 27 H 1.09000 * 109.46638 * 66.32515 * 1 2 3 28 28 H 1.08994 * 109.47183 * 186.32500 * 1 2 3 29 29 H 1.08999 * 110.61168 * 281.21460 * 5 4 2 30 30 H 1.09002 * 110.60360 * 158.25370 * 5 4 2 31 31 H 1.09001 * 110.93060 * 205.21238 * 6 5 4 32 32 H 1.08997 * 110.96346 * 81.56353 * 6 5 4 33 33 H 1.08997 * 109.64463 * 47.29925 * 8 7 2 34 34 H 1.09004 * 109.63539 * 167.71353 * 8 7 2 35 35 H 0.97002 * 120.00149 * 5.18607 * 12 10 9 36 36 H 1.08995 * 109.46673 * 300.00090 * 13 12 10 37 37 H 1.09000 * 109.46873 * 59.99743 * 13 12 10 38 38 H 1.08998 * 109.47061 * 299.99859 * 14 13 12 39 39 H 1.08998 * 109.47053 * 59.99804 * 14 13 12 40 40 H 0.96998 * 119.99788 * 180.02562 * 18 17 15 41 41 H 1.09008 * 109.63603 * 170.79291 * 23 9 8 42 42 H 1.09001 * 109.63579 * 291.39807 * 23 9 8 43 43 H 1.09000 * 109.51230 * 187.19132 * 24 23 9 44 44 H 1.08997 * 109.51062 * 67.04141 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9036 1.0240 0.0000 4 8 2.0200 -0.7005 -1.1575 5 6 3.2371 -1.3700 -0.7617 6 6 2.9188 -1.8898 0.6646 7 6 2.0529 -0.7473 1.2356 8 6 0.8904 -1.3262 2.0381 9 7 0.1927 -0.2185 2.7126 10 6 -1.1468 -0.0909 2.6347 11 8 -1.8086 -0.9510 2.0865 12 7 -1.7526 0.9902 3.1645 13 6 -3.2151 1.0756 3.1813 14 6 -3.6416 2.3926 3.8329 15 6 -5.1459 2.4806 3.8496 16 1 -5.7385 1.6775 3.4371 17 6 -5.7657 3.5867 4.3915 18 7 -5.0441 4.5650 4.8933 19 14 -7.6304 3.6956 4.4129 20 1 -8.1468 3.0985 5.6707 21 1 -8.0440 5.1197 4.3346 22 1 -8.1828 2.9552 3.2501 23 6 1.0038 0.7449 3.4739 24 6 2.1421 1.2395 2.5743 25 8 2.8464 0.1131 2.0436 26 1 -0.3634 0.6088 0.8280 27 1 -0.3632 0.4127 -0.9412 28 1 -0.3633 -1.0213 0.1132 29 1 4.0706 -0.6681 -0.7371 30 1 3.4536 -2.2008 -1.4333 31 1 3.8320 -2.0143 1.2464 32 1 2.3556 -2.8220 0.6232 33 1 0.2013 -1.8388 1.3671 34 1 1.2711 -2.0290 2.7793 35 1 -1.2204 1.7117 3.5347 36 1 -3.5930 1.0361 2.1597 37 1 -3.6213 0.2402 3.7515 38 1 -3.2636 2.4316 4.8545 39 1 -3.2353 3.2282 3.2630 40 1 -5.4801 5.3429 5.2749 41 1 0.3828 1.5883 3.7762 42 1 1.4193 0.2575 4.3559 43 1 2.8266 1.8547 3.1584 44 1 1.7293 1.8294 1.7560 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366205257.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:28 Heat of formation + Delta-G solvation = -118.309215 kcal Electronic energy + Delta-G solvation = -25778.315512 eV Core-core repulsion = 22116.835838 eV Total energy + Delta-G solvation = -3661.479674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.49228 -40.64521 -38.66166 -36.73721 -35.92059 -34.89094 -33.75535 -32.57417 -31.46398 -30.10011 -28.15357 -26.60568 -25.84523 -24.14197 -23.42441 -22.92124 -21.60098 -20.31963 -19.34665 -18.56933 -18.41578 -17.36749 -17.05319 -16.88338 -16.62438 -16.48263 -16.15087 -15.62391 -15.51940 -15.46001 -15.12396 -14.98282 -14.37866 -14.27353 -13.78790 -13.69720 -13.27227 -13.10029 -13.07990 -12.91478 -12.63831 -12.52610 -12.49936 -12.24796 -12.18711 -12.07490 -11.72191 -11.64668 -11.43083 -11.16869 -11.04934 -10.72227 -10.60523 -10.14345 -9.44075 -8.24401 -6.34337 1.41396 1.42262 1.48716 1.54849 2.05436 2.40082 2.46388 2.85796 2.91113 3.10673 3.31683 3.46797 3.61223 3.83639 3.95104 4.05012 4.12779 4.18275 4.31783 4.38737 4.41804 4.48331 4.50244 4.52257 4.62208 4.69378 4.77671 4.82037 4.84903 4.86278 4.93506 5.00832 5.17038 5.26833 5.35042 5.49380 5.58430 5.75191 5.79856 5.84624 6.06555 6.16614 6.78430 6.90486 7.34921 7.48902 8.87450 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.031098 B = 0.003174 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.174229 B = 8818.840701 C = 9084.697214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 H 0.072 0.928 4 O -0.393 6.393 5 C 0.042 3.958 6 C -0.135 4.135 7 C 0.080 3.920 8 C 0.110 3.890 9 N -0.633 5.633 10 C 0.707 3.293 11 O -0.626 6.626 12 N -0.735 5.735 13 C 0.161 3.839 14 C 0.025 3.975 15 C -0.546 4.546 16 H 0.058 0.942 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.963 3.037 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.267 1.267 23 C 0.071 3.929 24 C 0.043 3.957 25 O -0.363 6.363 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.404 0.596 36 H 0.043 0.957 37 H 0.044 0.956 38 H 0.010 0.990 39 H 0.008 0.992 40 H 0.266 0.734 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.142 0.858 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.447 -9.479 -5.550 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.003 3.997 3 H 0.090 0.910 4 O -0.313 6.313 5 C -0.034 4.034 6 C -0.172 4.172 7 C 0.039 3.961 8 C -0.013 4.013 9 N -0.371 5.371 10 C 0.410 3.590 11 O -0.507 6.507 12 N -0.392 5.392 13 C 0.037 3.963 14 C -0.012 4.012 15 C -0.585 4.585 16 H 0.076 0.924 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.788 3.212 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.192 1.192 23 C -0.052 4.052 24 C -0.034 4.034 25 O -0.281 6.281 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.241 0.759 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.028 0.972 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.159 0.841 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 21.018 -9.960 -6.004 24.021 hybrid contribution -1.175 0.884 0.462 1.542 sum 19.843 -9.076 -5.542 22.513 Atomic orbital electron populations 1.22236 0.94005 1.02966 1.01678 1.23177 0.94665 0.96249 0.85654 0.91050 1.88938 1.41313 1.67868 1.33157 1.23818 0.86950 0.97206 0.95394 1.23121 1.01359 0.96397 0.96344 1.22737 0.91647 0.91782 0.89929 1.22158 0.93443 0.88772 0.96943 1.47421 1.03808 1.30547 1.55360 1.15841 0.81917 0.82303 0.78970 1.90871 1.64537 1.44049 1.51281 1.45421 1.08098 1.20803 1.64835 1.21087 0.77156 0.98681 0.99410 1.19111 0.95698 0.91279 0.95124 1.21452 0.92676 1.04557 1.39777 0.92361 1.25840 1.03463 0.95142 0.94589 1.70050 1.37362 1.08711 1.40370 0.85467 0.79415 0.77440 0.78865 1.19745 1.20531 1.19154 1.22579 0.93729 0.93260 0.95617 1.23221 0.95048 0.88126 0.97035 1.87886 1.36172 1.37514 1.66539 0.91797 0.93153 0.91728 0.91076 0.86532 0.86790 0.87840 0.88754 0.89359 0.75867 0.93881 0.93734 0.97212 0.97379 0.92540 0.88533 0.88634 0.84083 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 7.58 71.98 0.55 -3.81 16 2 C 0.06 1.42 3.25 30.79 0.10 1.52 16 3 H 0.07 1.68 6.68 -2.39 -0.02 1.66 16 4 O -0.39 -9.38 11.20 -148.98 -1.67 -11.05 16 5 C 0.04 0.64 7.73 72.70 0.56 1.20 16 6 C -0.13 -1.88 6.43 31.76 0.20 -1.67 16 7 C 0.08 1.55 0.97 -10.27 -0.01 1.54 16 8 C 0.11 2.49 4.62 86.12 0.40 2.88 16 9 N -0.63 -16.09 2.02 -836.28 -1.69 -17.78 16 10 C 0.71 24.27 5.78 179.05 1.03 25.30 16 11 O -0.63 -26.20 14.76 -3.98 -0.06 -26.26 16 12 N -0.73 -25.72 5.46 -478.53 -2.61 -28.33 16 13 C 0.16 6.95 5.62 86.38 0.49 7.43 16 14 C 0.03 1.27 5.09 29.85 0.15 1.42 16 15 C -0.55 -30.39 9.11 25.60 0.23 -30.15 16 16 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 17 C 0.01 0.48 5.46 84.65 0.46 0.94 16 18 N -0.93 -53.72 13.29 21.45 0.28 -53.43 16 19 Si 0.96 43.47 29.54 68.60 2.03 45.49 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 C 0.07 1.28 6.63 86.35 0.57 1.86 16 24 C 0.04 0.66 6.70 72.08 0.48 1.14 16 25 O -0.36 -6.57 10.16 -148.98 -1.51 -8.09 16 26 H 0.06 1.98 4.64 -2.38 -0.01 1.96 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 2.02 5.25 -2.39 -0.01 2.01 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.11 1.21 8.07 -2.39 -0.02 1.19 16 32 H 0.10 1.27 7.84 -2.39 -0.02 1.25 16 33 H 0.09 2.54 4.97 -2.39 -0.01 2.52 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.40 12.07 6.02 -92.71 -0.56 11.51 16 36 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.10 1.68 5.65 -2.38 -0.01 1.67 16 42 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.05 0.93 6.57 -2.39 -0.02 0.91 16 Total: -1.00 -69.54 335.85 0.45 -69.10 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.46 Total: 20.73 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 5.22 Total: 9.61 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -4.02 Total: -99.54 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -3.24 Total: -45.39 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -69.54 0.45 -69.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366205257.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.214 kcal (2) G-P(sol) polarization free energy of solvation -69.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds