Wall clock time and date at job start Tue Mar 31 2020 05:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09011 * 109.50798 * 2 1 4 4 C 1.53094 * 109.51354 * 239.85762 * 2 1 3 5 5 N 1.47014 * 109.29266 * 183.19262 * 4 2 1 6 6 C 1.46899 * 111.00231 * 182.40464 * 5 4 2 7 7 C 1.50702 * 109.47083 * 170.01122 * 6 5 4 8 8 O 1.21290 * 119.99963 * 353.72804 * 7 6 5 9 9 N 1.34779 * 119.99773 * 173.71897 * 7 6 5 10 10 C 1.37101 * 119.99659 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00044 * 359.97438 * 10 9 7 12 12 C 1.38951 * 119.99470 * 180.02562 * 10 9 7 13 13 N 1.31412 * 120.00215 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99801 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47024 * 179.97438 * 14 12 10 16 16 H 1.48498 * 109.46883 * 299.99917 * 14 12 10 17 17 H 1.48500 * 109.47000 * 59.99655 * 14 12 10 18 18 C 1.47031 * 110.74094 * 58.63208 * 5 4 2 19 19 C 1.53006 * 109.24867 * 301.49045 * 18 5 4 20 20 C 1.53102 * 109.49606 * 296.76303 * 19 18 5 21 21 C 1.53198 * 109.02853 * 183.05928 * 20 19 18 22 22 C 1.53093 * 109.14178 * 56.90542 * 21 20 19 23 23 O 1.42897 * 109.44444 * 302.36066 * 22 21 20 24 24 C 1.42919 * 114.09766 * 61.17097 * 23 22 21 25 25 O 1.42933 * 109.41244 * 56.74902 * 19 18 5 26 26 H 1.09002 * 109.47518 * 299.90744 * 1 2 3 27 27 H 1.09004 * 109.47070 * 59.90601 * 1 2 3 28 28 H 1.08996 * 109.46881 * 179.90418 * 1 2 3 29 29 H 1.09004 * 109.50015 * 63.25137 * 4 2 1 30 30 H 1.09002 * 109.50420 * 303.13960 * 4 2 1 31 31 H 1.09007 * 109.46894 * 50.01792 * 6 5 4 32 32 H 1.08994 * 109.47130 * 290.01328 * 6 5 4 33 33 H 0.97004 * 120.00144 * 0.02562 * 9 7 6 34 34 H 0.97001 * 120.00178 * 0.02562 * 13 12 10 35 35 H 1.09003 * 109.50863 * 61.42939 * 18 5 4 36 36 H 1.09002 * 109.50492 * 181.51703 * 18 5 4 37 37 H 1.08997 * 109.54841 * 302.92241 * 20 19 18 38 38 H 1.08998 * 109.54693 * 63.19524 * 20 19 18 39 39 H 1.09005 * 109.52556 * 176.80431 * 21 20 19 40 40 H 1.08997 * 109.52812 * 297.00206 * 21 20 19 41 41 H 1.08995 * 109.48161 * 62.35406 * 22 21 20 42 42 H 1.09008 * 109.47466 * 182.36367 * 22 21 20 43 43 H 1.08997 * 109.48427 * 178.97879 * 24 23 22 44 44 H 1.08999 * 109.48157 * 58.93837 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0414 -0.7246 -1.2479 5 7 3.5095 -0.7889 -1.2048 6 6 4.0442 -1.4279 -2.4147 7 6 5.5412 -1.2584 -2.4525 8 8 6.0945 -0.5685 -1.6224 9 7 6.2650 -1.8736 -3.4085 10 6 7.6270 -1.7198 -3.4426 11 1 8.1197 -1.1054 -2.7036 12 6 8.3732 -2.3536 -4.4286 13 7 7.7735 -3.1008 -5.3281 14 14 10.2288 -2.1435 -4.4755 15 1 10.7858 -2.9166 -5.6144 16 1 10.5600 -0.7057 -4.6435 17 1 10.8155 -2.6416 -3.2056 18 6 3.9647 -1.4885 0.0057 19 6 3.4327 -0.7582 1.2405 20 6 4.0235 0.6533 1.2933 21 6 3.5449 1.3475 2.5724 22 6 3.9471 0.5016 3.7833 23 8 3.3887 -0.8076 3.6556 24 6 3.8368 -1.5232 2.5025 25 8 2.0077 -0.6759 1.1665 26 1 -0.3634 0.5124 0.8908 27 1 -0.3633 0.5153 -0.8892 28 1 -0.3633 -1.0276 -0.0017 29 1 1.7270 -0.1809 -2.1388 30 1 1.6335 -1.7351 -1.2748 31 1 3.6035 -0.9625 -3.2964 32 1 3.7989 -2.4898 -2.4034 33 1 5.8224 -2.4251 -4.0725 34 1 6.8100 -3.2096 -5.3040 35 1 3.5890 -2.5117 -0.0022 36 1 5.0544 -1.5010 0.0307 37 1 5.1118 0.5933 1.2964 38 1 3.6907 1.2207 0.4242 39 1 4.0059 2.3324 2.6467 40 1 2.4603 1.4530 2.5457 41 1 5.0336 0.4300 3.8319 42 1 3.5726 0.9693 4.6939 43 1 3.3808 -2.5131 2.4890 44 1 4.9217 -1.6229 2.5353 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408349927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:48 Heat of formation + Delta-G solvation = -119.391033 kcal Electronic energy + Delta-G solvation = -25962.256431 eV Core-core repulsion = 22300.729846 eV Total energy + Delta-G solvation = -3661.526585 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.66190 -38.61592 -37.80889 -35.35966 -34.15757 -33.60125 -32.36973 -31.16616 -30.23837 -27.77011 -26.61100 -25.18802 -24.62561 -23.01463 -22.26445 -21.09013 -19.58875 -19.24994 -17.92654 -16.77409 -16.52719 -16.12194 -16.09552 -15.38540 -15.22462 -14.93440 -14.77901 -14.39998 -13.98529 -13.88987 -13.64900 -13.31828 -12.90120 -12.79793 -12.65995 -12.40468 -12.20504 -12.02348 -11.74584 -11.74104 -11.34421 -11.24638 -11.01314 -10.95779 -10.81728 -10.60880 -10.23146 -10.18245 -9.88996 -9.55700 -9.43511 -9.35378 -8.51669 -8.08449 -8.00311 -6.78138 -3.91535 3.28388 3.32656 3.51704 3.53147 3.77951 3.80833 3.98167 4.26887 4.66115 4.79646 4.80517 4.87166 4.95537 4.99205 5.11336 5.19934 5.21157 5.27326 5.32083 5.40484 5.44267 5.54068 5.56389 5.62563 5.65035 5.69410 5.77128 5.82998 5.90363 5.93785 5.97914 6.02790 6.08422 6.14225 6.30316 6.44562 7.03628 7.13065 7.15660 7.37378 7.77410 8.04889 8.57104 8.76999 9.44425 9.84821 10.65195 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.020559 B = 0.003958 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.631225 B = 7072.340709 C = 7957.015665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.087 3.913 3 H 0.068 0.932 4 C 0.022 3.978 5 N -0.509 5.509 6 C 0.045 3.955 7 C 0.445 3.555 8 O -0.570 6.570 9 N -0.576 5.576 10 C -0.382 4.382 11 H 0.099 0.901 12 C -0.009 4.009 13 N -0.901 5.901 14 Si 1.091 2.909 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.032 3.968 19 C 0.095 3.905 20 C -0.134 4.134 21 C -0.152 4.152 22 C 0.059 3.941 23 O -0.373 6.373 24 C 0.078 3.922 25 O -0.363 6.363 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.039 0.961 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.375 0.625 34 H 0.261 0.739 35 H 0.033 0.967 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.510 4.624 11.371 17.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.029 3.971 3 H 0.086 0.914 4 C -0.106 4.106 5 N -0.233 5.233 6 C -0.086 4.086 7 C 0.231 3.769 8 O -0.453 6.453 9 N -0.214 5.214 10 C -0.511 4.511 11 H 0.117 0.883 12 C -0.211 4.211 13 N -0.540 5.540 14 Si 0.917 3.083 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.097 4.097 19 C 0.055 3.945 20 C -0.171 4.171 21 C -0.190 4.190 22 C -0.017 4.017 23 O -0.291 6.291 24 C 0.001 3.999 25 O -0.282 6.282 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.208 0.792 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.796 4.984 11.386 16.463 hybrid contribution -1.687 -0.507 -0.268 1.782 sum -12.483 4.477 11.118 17.306 Atomic orbital electron populations 1.21720 0.93042 1.02756 1.02378 1.22121 0.94319 0.96136 0.84508 0.91424 1.22866 0.88419 0.99965 0.99388 1.61762 1.07118 1.53002 1.01393 1.21891 0.95817 0.97429 0.93453 1.19625 0.87565 0.84998 0.84702 1.90495 1.71992 1.42220 1.40624 1.41958 1.07927 1.44336 1.27187 1.20515 0.81868 1.32228 1.16486 0.88329 1.26502 1.08128 0.94192 0.92306 1.70904 1.11257 1.37118 1.34699 0.83139 0.72064 0.76603 0.76526 1.20401 1.20997 1.21024 1.22769 1.03377 0.94379 0.89139 1.22078 0.81438 0.96079 0.94909 1.21993 1.01570 0.95497 0.98056 1.22148 1.02281 0.99103 0.95476 1.22589 0.97493 0.83504 0.98160 1.87938 1.69887 1.27786 1.43536 1.22513 0.99024 0.95209 0.83180 1.88017 1.20041 1.77957 1.42225 0.91699 0.91141 0.92018 0.89924 0.94296 0.89196 0.93584 0.79212 0.92775 0.94847 0.87425 0.90450 0.89887 0.91177 0.90996 0.93262 0.89189 0.88423 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.57 37.16 0.36 -1.03 16 2 C 0.09 1.10 3.03 -26.68 -0.08 1.02 16 3 H 0.07 0.89 6.43 -51.92 -0.33 0.55 16 4 C 0.02 0.29 4.93 -3.71 -0.02 0.28 16 5 N -0.51 -8.41 3.85 -235.79 -0.91 -9.32 16 6 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 7 C 0.45 10.27 7.35 -10.98 -0.08 10.19 16 8 O -0.57 -14.90 14.25 5.55 0.08 -14.82 16 9 N -0.58 -14.26 5.28 -10.96 -0.06 -14.32 16 10 C -0.38 -10.57 9.68 -14.93 -0.14 -10.71 16 11 H 0.10 2.88 7.16 -52.49 -0.38 2.51 16 12 C -0.01 -0.24 5.50 -17.47 -0.10 -0.33 16 13 N -0.90 -25.04 13.68 55.50 0.76 -24.28 16 14 Si 1.09 24.03 29.92 -169.99 -5.09 18.94 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 C 0.03 0.52 4.00 -3.75 -0.02 0.50 16 19 C 0.10 1.39 0.71 -90.56 -0.06 1.32 16 20 C -0.13 -1.93 4.40 -26.58 -0.12 -2.05 16 21 C -0.15 -1.82 5.98 -26.58 -0.16 -1.98 16 22 C 0.06 0.68 6.84 37.21 0.25 0.94 16 23 O -0.37 -5.19 10.70 -42.55 -0.46 -5.65 16 24 C 0.08 1.06 5.81 37.16 0.22 1.27 16 25 O -0.36 -5.27 9.34 -42.55 -0.40 -5.67 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.42 8.04 -51.93 -0.42 1.01 16 32 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 33 H 0.37 8.62 6.73 -40.82 -0.27 8.35 16 34 H 0.26 6.97 6.78 -40.82 -0.28 6.70 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.11 2.08 6.11 -51.93 -0.32 1.77 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.30 6.07 -51.93 -0.32 0.99 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.89 7.83 -51.93 -0.41 0.49 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 43 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -31.93 342.51 -7.89 -39.82 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -7.00 Total: 9.94 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 0.02 Total: 0.20 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.21 Total: -47.92 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.77 Total: -26.14 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -5.09 Total: 18.94 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.93 -7.89 -39.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408349927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.575 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds