Wall clock time and date at job start Tue Mar 31 2020 05:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.55628 * 2 1 4 4 C 1.53289 * 109.51398 * 239.86909 * 2 1 3 5 5 N 1.47160 * 108.42459 * 187.74405 * 4 2 1 6 6 C 1.34772 * 120.99061 * 230.54278 * 5 4 2 7 7 O 1.21585 * 119.99714 * 174.78920 * 6 5 4 8 8 N 1.34779 * 120.00294 * 355.06455 * 6 5 4 9 9 C 1.46503 * 119.99952 * 184.70469 * 8 6 5 10 10 C 1.50695 * 109.46901 * 179.97438 * 9 8 6 11 11 H 1.08007 * 120.00251 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99975 * 179.97438 * 10 9 8 13 13 N 1.31508 * 119.99831 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99813 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47107 * 90.00229 * 14 12 10 16 16 H 1.48499 * 109.46954 * 210.00012 * 14 12 10 17 17 H 1.48493 * 109.47309 * 329.99926 * 14 12 10 18 18 C 1.47176 * 118.01064 * 50.81346 * 5 4 2 19 19 C 1.53592 * 108.14927 * 309.28867 * 18 5 4 20 20 C 1.53065 * 109.43273 * 172.48170 * 19 18 5 21 21 C 1.53121 * 109.16307 * 176.79466 * 20 19 18 22 22 O 1.42898 * 109.40729 * 302.54412 * 21 20 19 23 23 C 1.42903 * 114.13551 * 61.19265 * 22 21 20 24 24 C 1.53071 * 109.59736 * 292.24234 * 19 18 5 25 25 O 1.42839 * 109.36594 * 52.39559 * 19 18 5 26 26 H 1.09005 * 109.47323 * 180.12866 * 1 2 3 27 27 H 1.09000 * 109.47226 * 300.12735 * 1 2 3 28 28 H 1.09004 * 109.47403 * 60.12943 * 1 2 3 29 29 H 1.09003 * 109.66951 * 68.01102 * 4 2 1 30 30 H 1.08994 * 109.70040 * 307.49265 * 4 2 1 31 31 H 0.96997 * 119.99660 * 4.69726 * 8 6 5 32 32 H 1.09003 * 109.46494 * 299.99461 * 9 8 6 33 33 H 1.08996 * 109.47298 * 59.99773 * 9 8 6 34 34 H 0.97002 * 119.99729 * 180.02562 * 13 12 10 35 35 H 1.09007 * 109.68404 * 69.06558 * 18 5 4 36 36 H 1.09001 * 109.68474 * 189.62135 * 18 5 4 37 37 H 1.08999 * 109.52273 * 296.70009 * 20 19 18 38 38 H 1.08998 * 109.51811 * 56.89055 * 20 19 18 39 39 H 1.09000 * 109.47749 * 182.56199 * 21 20 19 40 40 H 1.08997 * 109.47762 * 62.52715 * 21 20 19 41 41 H 1.08995 * 109.48844 * 178.82113 * 23 22 21 42 42 H 1.09000 * 109.48675 * 58.76710 * 23 22 21 43 43 H 1.09002 * 109.52710 * 303.18675 * 24 19 18 44 44 H 1.08996 * 109.52173 * 63.31856 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0420 -0.7253 -1.2496 5 7 3.5013 -0.8761 -1.1347 6 6 4.3187 -0.5037 -2.1394 7 8 5.5246 -0.5473 -1.9900 8 7 3.7995 -0.0776 -3.3079 9 6 4.6846 0.2290 -4.4343 10 6 3.8604 0.6805 -5.6124 11 1 2.7848 0.7334 -5.5304 12 6 4.4795 1.0261 -6.7949 13 7 5.7892 0.9612 -6.8950 14 14 3.4577 1.5851 -8.2554 15 1 3.2851 3.0591 -8.2036 16 1 4.1494 1.2117 -9.5153 17 1 2.1265 0.9289 -8.2084 18 6 4.0410 -1.4513 0.1079 19 6 3.4302 -0.6887 1.2929 20 6 3.8232 -1.3804 2.6006 21 6 3.2788 -0.5708 3.7808 22 8 3.7856 0.7637 3.7151 23 6 3.4067 1.4752 2.5352 24 6 3.9567 0.7486 1.3047 25 8 2.0076 -0.6765 1.1657 26 1 -0.3634 -1.0277 0.0023 27 1 -0.3634 0.5158 0.8888 28 1 -0.3634 0.5118 -0.8912 29 1 1.8023 -0.1402 -2.1375 30 1 1.5760 -1.7080 -1.3209 31 1 2.8398 0.0260 -3.4030 32 1 5.3753 1.0223 -4.1482 33 1 5.2486 -0.6632 -4.7065 34 1 6.2247 1.2046 -7.7268 35 1 3.7745 -2.5065 0.1700 36 1 5.1257 -1.3448 0.1210 37 1 3.4010 -2.3850 2.6225 38 1 4.9095 -1.4391 2.6694 39 1 3.5944 -1.0339 4.7156 40 1 2.1900 -0.5489 3.7351 41 1 3.8142 2.4854 2.5731 42 1 2.3196 1.5236 2.4730 43 1 5.0459 0.7373 1.3452 44 1 3.6311 1.2632 0.4008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448381436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:06 Heat of formation + Delta-G solvation = -139.196584 kcal Electronic energy + Delta-G solvation = -25876.852390 eV Core-core repulsion = 22214.466972 eV Total energy + Delta-G solvation = -3662.385418 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.10305 -40.52744 -38.80111 -36.31482 -35.81908 -35.04970 -34.22373 -32.20553 -31.84792 -29.75523 -28.27256 -27.13639 -25.00857 -24.76812 -23.72755 -22.66617 -21.22785 -20.46953 -19.66467 -18.11511 -17.77596 -17.63565 -17.23560 -16.87524 -16.60536 -16.48076 -16.08084 -15.82146 -15.42716 -15.32047 -14.98217 -14.87247 -14.13150 -14.03580 -13.69757 -13.63772 -13.51425 -13.25614 -13.03928 -12.97483 -12.85629 -12.72389 -12.62331 -12.41402 -12.22187 -12.03744 -11.66220 -11.49786 -11.39017 -11.14185 -10.97519 -10.82307 -10.56618 -10.03404 -9.37293 -8.29927 -6.46951 1.42404 1.45742 1.55187 1.60687 2.10889 2.37020 2.51291 2.93062 3.05141 3.06262 3.48154 3.56084 3.67880 3.78969 3.97319 3.99359 4.08196 4.22074 4.32412 4.37396 4.49045 4.53141 4.58241 4.60341 4.71250 4.74030 4.82675 4.85673 4.95415 5.01067 5.03667 5.08327 5.18250 5.23151 5.31617 5.37760 5.45909 5.62694 5.81262 6.01207 6.13166 6.23072 6.63895 7.08290 7.23203 7.60176 8.82478 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.025015 B = 0.003614 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.062591 B = 7746.023798 C = 8182.959104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.072 3.928 3 H 0.059 0.941 4 C 0.078 3.922 5 N -0.630 5.630 6 C 0.695 3.305 7 O -0.643 6.643 8 N -0.722 5.722 9 C 0.286 3.714 10 C -0.555 4.555 11 H 0.084 0.916 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.986 3.014 15 H -0.270 1.270 16 H -0.284 1.284 17 H -0.254 1.254 18 C 0.107 3.893 19 C 0.114 3.886 20 C -0.135 4.135 21 C 0.064 3.936 22 O -0.400 6.400 23 C 0.073 3.927 24 C -0.175 4.175 25 O -0.362 6.362 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.402 0.598 32 H -0.015 1.015 33 H -0.015 1.015 34 H 0.269 0.731 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.061 0.939 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.909 -3.142 19.606 24.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.013 3.987 3 H 0.077 0.923 4 C -0.045 4.045 5 N -0.368 5.368 6 C 0.397 3.603 7 O -0.526 6.526 8 N -0.377 5.377 9 C 0.163 3.837 10 C -0.593 4.593 11 H 0.102 0.898 12 C -0.195 4.195 13 N -0.569 5.569 14 Si 0.809 3.191 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.178 1.178 18 C -0.016 4.016 19 C 0.073 3.927 20 C -0.173 4.173 21 C -0.012 4.012 22 O -0.319 6.319 23 C -0.004 4.004 24 C -0.213 4.213 25 O -0.282 6.282 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.239 0.761 32 H 0.003 0.997 33 H 0.003 0.997 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.133 0.867 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.901 -3.166 19.826 23.865 hybrid contribution 0.103 0.318 -1.636 1.669 sum -12.798 -2.849 18.190 22.423 Atomic orbital electron populations 1.21726 0.89677 1.03990 1.03905 1.22595 0.96995 0.95071 0.83991 0.92314 1.22623 0.78849 1.02878 1.00116 1.47275 1.06721 1.66896 1.15915 1.16183 0.84808 0.78290 0.81050 1.90827 1.15165 1.63847 1.82717 1.45462 1.11052 1.70010 1.11216 1.18424 0.89322 0.93197 0.82749 1.21565 0.94423 1.46628 0.96684 0.89838 1.26071 0.96214 0.94904 1.02299 1.70143 1.10546 1.48051 1.28154 0.85134 0.78582 0.78690 0.76669 1.19559 1.20977 1.17771 1.22280 0.99789 0.97561 0.81960 1.21789 0.81607 0.94244 0.95049 1.22174 1.02560 1.00808 0.91792 1.22673 0.98554 0.81478 0.98531 1.87892 1.75957 1.27038 1.40978 1.22464 0.99338 0.95368 0.83185 1.22650 1.01724 0.97170 0.99779 1.87934 1.19595 1.77222 1.43408 0.90865 0.90849 0.89284 0.88933 0.89093 0.76062 0.99732 0.99718 0.92201 0.89631 0.90396 0.87965 0.89389 0.86711 0.92021 0.88380 0.92069 0.91564 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.57 71.98 0.69 -1.08 16 2 C 0.07 1.39 3.02 30.69 0.09 1.48 16 3 H 0.06 1.25 6.20 -2.39 -0.01 1.24 16 4 C 0.08 1.79 5.86 86.35 0.51 2.30 16 5 N -0.63 -19.93 2.60 -834.69 -2.17 -22.10 16 6 C 0.70 30.20 8.31 179.05 1.49 31.69 16 7 O -0.64 -34.08 15.82 -3.99 -0.06 -34.15 16 8 N -0.72 -32.01 5.46 -482.30 -2.63 -34.65 16 9 C 0.29 16.07 5.43 85.63 0.47 16.54 16 10 C -0.56 -30.28 9.28 25.60 0.24 -30.04 16 11 H 0.08 4.09 7.60 -2.91 -0.02 4.06 16 12 C 0.00 0.27 5.46 84.66 0.46 0.73 16 13 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 14 Si 0.99 41.99 29.54 68.60 2.03 44.02 16 15 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 18 C 0.11 2.97 5.35 86.45 0.46 3.43 16 19 C 0.11 2.53 0.69 -10.55 -0.01 2.52 16 20 C -0.14 -2.34 5.15 30.66 0.16 -2.18 16 21 C 0.06 1.05 6.70 72.02 0.48 1.53 16 22 O -0.40 -8.75 10.76 -148.98 -1.60 -10.35 16 23 C 0.07 1.53 6.70 72.02 0.48 2.01 16 24 C -0.18 -4.34 4.46 30.66 0.14 -4.21 16 25 O -0.36 -7.43 8.86 -148.98 -1.32 -8.75 16 26 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.09 2.07 5.77 -2.39 -0.01 2.05 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.40 14.79 5.88 -92.71 -0.54 14.25 16 32 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 33 H -0.02 -0.96 8.14 -2.39 -0.02 -0.97 16 34 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.08 2.55 7.06 -2.39 -0.02 2.53 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.06 0.99 7.83 -2.39 -0.02 0.97 16 41 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.06 1.18 7.83 -2.39 -0.02 1.16 16 43 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.06 1.77 6.05 -2.39 -0.01 1.76 16 Total: -1.00 -73.92 343.85 0.63 -73.29 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.45 Total: 23.99 kcal Atomic # 6 Polarization: 19.07 SS G_CDS: 5.66 Total: 24.73 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -4.52 Total: -112.77 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -2.99 Total: -53.25 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -73.92 0.63 -73.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448381436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.909 kcal (2) G-P(sol) polarization free energy of solvation -73.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds