Wall clock time and date at job start Tue Mar 31 2020 05:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.89902 * 2 1 4 4 O 1.43891 * 110.06850 * 238.81189 * 2 1 3 5 5 C 1.44432 * 106.99181 * 214.15359 * 4 2 1 6 6 C 1.55105 * 103.56222 * 39.73465 * 5 4 2 7 7 C 1.53577 * 109.90797 * 121.08412 * 2 1 3 8 8 C 1.53113 * 110.50554 * 3.41121 * 7 2 1 9 9 N 1.47275 * 108.14916 * 288.10415 * 8 7 2 10 10 C 1.34779 * 121.04211 * 130.33733 * 9 8 7 11 11 O 1.21584 * 120.00293 * 4.89522 * 10 9 8 12 12 N 1.34782 * 119.99539 * 184.89097 * 10 9 8 13 13 C 1.46499 * 119.99518 * 174.89945 * 12 10 9 14 14 C 1.50698 * 109.47071 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00281 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00183 * 179.97438 * 14 13 12 17 17 N 1.31508 * 119.99758 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99864 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47357 * 359.97438 * 18 16 14 20 20 H 1.48509 * 109.46995 * 240.00005 * 18 16 14 21 21 H 1.48502 * 109.47197 * 120.00572 * 18 16 14 22 22 C 1.47159 * 117.90820 * 310.06286 * 9 8 7 23 23 C 1.53272 * 108.51119 * 51.31393 * 22 9 8 24 24 H 1.09000 * 109.51611 * 67.12734 * 23 22 9 25 25 C 1.53005 * 109.50956 * 187.27008 * 23 22 9 26 26 O 1.42235 * 110.61805 * 240.44783 * 7 2 1 27 27 H 1.08998 * 109.47213 * 306.23583 * 1 2 3 28 28 H 1.08997 * 109.46605 * 66.23744 * 1 2 3 29 29 H 1.08999 * 109.47255 * 186.23380 * 1 2 3 30 30 H 1.09002 * 110.60020 * 158.25335 * 5 4 2 31 31 H 1.09003 * 110.60536 * 281.06007 * 5 4 2 32 32 H 1.09007 * 110.93020 * 205.24877 * 6 5 4 33 33 H 1.09003 * 110.93034 * 81.58379 * 6 5 4 34 34 H 1.08996 * 109.85308 * 168.42195 * 8 7 2 35 35 H 1.08998 * 109.73986 * 47.72189 * 8 7 2 36 36 H 0.96994 * 120.00142 * 354.90357 * 12 10 9 37 37 H 1.08999 * 109.47035 * 60.00647 * 13 12 10 38 38 H 1.09001 * 109.47302 * 300.00647 * 13 12 10 39 39 H 0.97001 * 120.00521 * 359.97438 * 17 16 14 40 40 H 1.09009 * 109.62595 * 171.02082 * 22 9 8 41 41 H 1.08998 * 109.63494 * 291.40208 * 22 9 8 42 42 H 1.08993 * 109.47470 * 59.99792 * 25 23 22 43 43 H 1.09002 * 109.47232 * 180.02562 * 25 23 22 44 44 H 1.09006 * 109.46980 * 299.99398 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0238 -0.6999 -1.1562 5 6 3.2423 -1.3655 -0.7583 6 6 2.9238 -1.8851 0.6680 7 6 2.0530 -0.7455 1.2367 8 6 0.8896 -1.3307 2.0420 9 7 0.1849 -0.2195 2.7035 10 6 -1.1546 -0.0975 2.6190 11 8 -1.8099 -0.9591 2.0653 12 7 -1.7679 0.9797 3.1484 13 6 -3.2084 1.1686 2.9599 14 6 -3.6422 2.4391 3.6445 15 1 -2.9174 3.0454 4.1674 16 6 -4.9643 2.8280 3.6026 17 7 -5.8469 2.0900 2.9655 18 14 -5.5019 4.4032 4.4507 19 1 -4.3268 5.0458 5.0922 20 1 -6.5184 4.0859 5.4858 21 1 -6.0880 5.3296 3.4490 22 6 0.9888 0.7499 3.4649 23 6 2.1306 1.2446 2.5700 24 1 1.7208 1.8310 1.7477 25 6 3.0847 2.1132 3.3924 26 8 2.8409 0.1185 2.0464 27 1 -0.3633 0.6074 0.8289 28 1 -0.3632 0.4141 -0.9405 29 1 -0.3634 -1.0216 0.1116 30 1 3.4622 -2.1961 -1.4289 31 1 4.0742 -0.6615 -0.7357 32 1 3.8366 -2.0058 1.2514 33 1 2.3637 -2.8193 0.6261 34 1 1.2704 -2.0228 2.7929 35 1 0.2053 -1.8533 1.3736 36 1 -1.2555 1.6297 3.6540 37 1 -3.7450 0.3226 3.3893 38 1 -3.4297 1.2365 1.8947 39 1 -5.5677 1.2723 2.5247 40 1 0.3634 1.5925 3.7601 41 1 1.3980 0.2689 4.3533 42 1 3.4954 1.5251 4.2131 43 1 3.8962 2.4651 2.7554 44 1 2.5420 2.9687 3.7945 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448384526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:32 Heat of formation + Delta-G solvation = -121.817703 kcal Electronic energy + Delta-G solvation = -26390.842061 eV Core-core repulsion = 22729.210248 eV Total energy + Delta-G solvation = -3661.631814 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.56516 -40.65317 -38.89036 -36.60862 -35.96958 -34.82295 -34.13576 -32.63005 -31.59104 -29.30095 -27.97988 -27.32805 -25.77183 -24.58890 -23.59391 -22.69826 -21.63471 -20.49885 -19.83225 -18.63893 -18.61001 -17.54074 -16.94681 -16.91524 -16.66520 -16.37538 -15.87640 -15.64181 -15.33139 -15.25062 -15.02306 -14.91602 -14.36299 -14.12672 -13.82818 -13.71462 -13.50147 -13.21766 -13.14681 -13.07054 -12.85469 -12.59105 -12.55907 -12.34210 -12.22053 -12.06474 -11.87044 -11.73189 -11.24990 -11.11757 -10.90731 -10.78751 -10.75441 -10.12847 -9.45630 -8.80052 -6.55456 1.47421 1.56494 1.65572 1.81002 2.02545 2.33940 2.53911 2.80507 2.94288 3.08578 3.26096 3.39033 3.55481 3.69705 3.84826 3.95282 4.03943 4.10751 4.21986 4.31945 4.37669 4.39977 4.43113 4.55197 4.64950 4.69948 4.72919 4.78394 4.86858 4.90135 4.96392 4.97562 4.99314 5.11103 5.25005 5.30381 5.41540 5.49252 5.76293 5.86337 6.05920 6.08818 6.33069 6.96262 7.27438 7.51352 8.59526 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.022365 B = 0.004120 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.648585 B = 6795.075052 C = 7354.429932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 H 0.071 0.929 4 O -0.393 6.393 5 C 0.042 3.958 6 C -0.133 4.133 7 C 0.083 3.917 8 C 0.110 3.890 9 N -0.633 5.633 10 C 0.702 3.298 11 O -0.635 6.635 12 N -0.721 5.721 13 C 0.274 3.726 14 C -0.627 4.627 15 H 0.075 0.925 16 C -0.031 4.031 17 N -0.930 5.930 18 Si 1.134 2.866 19 H -0.258 1.258 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.077 3.923 23 C 0.070 3.930 24 H 0.055 0.945 25 C -0.136 4.136 26 O -0.356 6.356 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.402 0.598 37 H -0.019 1.019 38 H -0.019 1.019 39 H 0.254 0.746 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.446 -2.357 -0.104 24.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.006 3.994 3 H 0.089 0.911 4 O -0.312 6.312 5 C -0.033 4.033 6 C -0.170 4.170 7 C 0.042 3.958 8 C -0.013 4.013 9 N -0.371 5.371 10 C 0.404 3.596 11 O -0.517 6.517 12 N -0.377 5.377 13 C 0.150 3.850 14 C -0.665 4.665 15 H 0.093 0.907 16 C -0.229 4.229 17 N -0.566 5.566 18 Si 0.954 3.046 19 H -0.182 1.182 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.046 4.046 23 C 0.012 3.988 24 H 0.073 0.927 25 C -0.193 4.193 26 O -0.275 6.275 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.136 0.864 31 H 0.091 0.909 32 H 0.135 0.865 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.240 0.760 37 H -0.001 1.001 38 H -0.001 1.001 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 22.747 -2.046 -0.364 22.842 hybrid contribution 0.642 -0.953 -0.319 1.192 sum 23.389 -2.999 -0.683 23.590 Atomic orbital electron populations 1.22231 0.94453 1.02803 1.01446 1.23114 0.94207 0.96242 0.85838 0.91143 1.88935 1.41243 1.68046 1.33021 1.23836 0.86841 0.97330 0.95330 1.23113 1.01287 0.96230 0.96403 1.22793 0.91604 0.91680 0.89728 1.22266 0.93293 0.88703 0.97073 1.47426 1.03491 1.30233 1.55927 1.15969 0.82028 0.82315 0.79250 1.90846 1.65140 1.43557 1.52143 1.45329 1.10218 1.24620 1.57491 1.18538 0.76626 0.95700 0.94086 1.22428 0.97598 1.08334 1.38115 0.90658 1.27618 0.93013 1.06279 0.96009 1.70840 1.37656 1.15020 1.33053 0.82742 0.76267 0.70324 0.75307 1.18241 1.20572 1.20578 1.22625 0.93479 0.92949 0.95505 1.22645 0.92937 0.87468 0.95796 0.92743 1.21733 0.98924 0.98781 0.99851 1.87881 1.36151 1.36980 1.66471 0.92150 0.93373 0.91964 0.86398 0.90863 0.86480 0.87914 0.89210 0.89183 0.75998 1.00089 1.00068 0.93639 0.88899 0.88568 0.90496 0.90817 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 7.57 71.98 0.54 -4.65 16 2 C 0.06 1.74 3.24 30.79 0.10 1.84 16 3 H 0.07 1.92 6.66 -2.39 -0.02 1.90 16 4 O -0.39 -10.48 11.21 -148.98 -1.67 -12.15 16 5 C 0.04 0.73 7.73 72.70 0.56 1.29 16 6 C -0.13 -2.15 6.43 31.75 0.20 -1.95 16 7 C 0.08 1.88 0.97 -10.13 -0.01 1.87 16 8 C 0.11 2.95 4.65 86.27 0.40 3.35 16 9 N -0.63 -19.41 1.99 -835.40 -1.66 -21.07 16 10 C 0.70 29.32 5.76 179.05 1.03 30.35 16 11 O -0.63 -31.92 14.71 -3.98 -0.06 -31.98 16 12 N -0.72 -31.41 5.47 -482.30 -2.64 -34.05 16 13 C 0.27 15.08 4.74 85.63 0.41 15.49 16 14 C -0.63 -34.35 9.28 25.60 0.24 -34.11 16 15 H 0.08 3.77 7.60 -2.91 -0.02 3.75 16 16 C -0.03 -1.72 5.46 84.66 0.46 -1.25 16 17 N -0.93 -57.70 13.65 21.45 0.29 -57.41 16 18 Si 1.13 47.82 29.90 68.60 2.05 49.87 16 19 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 20 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 22 C 0.08 1.74 5.90 86.34 0.51 2.25 16 23 C 0.07 1.38 3.11 30.69 0.10 1.47 16 24 H 0.05 1.23 6.56 -2.39 -0.02 1.21 16 25 C -0.14 -1.78 9.57 71.98 0.69 -1.09 16 26 O -0.36 -7.44 9.81 -148.98 -1.46 -8.90 16 27 H 0.06 2.27 4.60 -2.39 -0.01 2.26 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 2.30 5.24 -2.39 -0.01 2.29 16 30 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.12 1.43 8.07 -2.38 -0.02 1.41 16 33 H 0.10 1.51 7.84 -2.39 -0.02 1.49 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.09 2.87 5.03 -2.39 -0.01 2.85 16 36 H 0.40 14.81 5.83 -92.71 -0.54 14.27 16 37 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 38 H -0.02 -1.13 8.01 -2.39 -0.02 -1.15 16 39 H 0.25 16.44 7.22 -92.71 -0.67 15.77 16 40 H 0.09 2.06 5.66 -2.38 -0.01 2.05 16 41 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -74.30 333.93 0.67 -73.63 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.58 Total: 27.20 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 5.23 Total: 14.86 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -4.01 Total: -112.53 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -3.19 Total: -53.02 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.05 Total: 49.87 kcal Total: -74.30 0.67 -73.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448384526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.185 kcal (2) G-P(sol) polarization free energy of solvation -74.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds