Wall clock time and date at job start Tue Mar 31 2020 03:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46816 * 2 1 4 4 C 1.50699 * 109.47248 * 119.99571 * 2 1 3 5 5 O 1.21279 * 119.99808 * 0.02562 * 4 2 1 6 6 N 1.34774 * 120.00254 * 180.02562 * 4 2 1 7 7 C 1.46500 * 120.00121 * 180.02562 * 6 4 2 8 8 H 1.08989 * 109.47064 * 325.00153 * 7 6 4 9 9 C 1.53003 * 109.46740 * 85.00553 * 7 6 4 10 10 O 1.42894 * 109.47522 * 54.90916 * 9 7 6 11 11 C 1.50706 * 109.47125 * 205.00043 * 7 6 4 12 12 O 1.21280 * 120.00014 * 332.60360 * 11 7 6 13 13 N 1.34769 * 119.99842 * 152.60221 * 11 7 6 14 14 C 1.46503 * 119.99957 * 184.79211 * 13 11 7 15 15 C 1.52997 * 109.47151 * 176.30992 * 14 13 11 16 16 C 1.50706 * 115.55086 * 54.46083 * 15 14 13 17 17 H 1.07999 * 119.99663 * 269.66770 * 16 15 14 18 18 C 1.37868 * 120.00346 * 89.67093 * 16 15 14 19 19 N 1.31515 * 120.00228 * 178.60719 * 18 16 15 20 20 Si 1.86800 * 119.99875 * 358.60718 * 18 16 15 21 21 H 1.48493 * 109.47277 * 87.53241 * 20 18 16 22 22 H 1.48505 * 109.47205 * 207.53349 * 20 18 16 23 23 H 1.48500 * 109.47165 * 327.53254 * 20 18 16 24 24 C 1.52997 * 117.49945 * 268.78653 * 15 14 13 25 25 C 1.52999 * 117.50067 * 200.12630 * 15 14 13 26 26 H 1.08997 * 109.47346 * 60.00578 * 1 2 3 27 27 H 1.09005 * 109.46887 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47662 * 299.99634 * 1 2 3 29 29 H 1.08999 * 109.47662 * 240.00366 * 2 1 3 30 30 H 1.08999 * 109.47066 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47097 * 300.00066 * 3 2 1 32 32 H 1.09008 * 109.46863 * 59.99994 * 3 2 1 33 33 H 0.97001 * 119.99729 * 0.02562 * 6 4 2 34 34 H 1.09003 * 109.46973 * 174.90967 * 9 7 6 35 35 H 1.08998 * 109.46978 * 294.89785 * 9 7 6 36 36 H 0.96704 * 113.99973 * 180.02562 * 10 9 7 37 37 H 0.97005 * 120.00260 * 4.78921 * 13 11 7 38 38 H 1.09007 * 109.46756 * 296.30522 * 14 13 11 39 39 H 1.08993 * 109.47121 * 56.30407 * 14 13 11 40 40 H 0.97006 * 120.00174 * 179.97438 * 19 18 16 41 41 H 1.09005 * 117.49680 * 0.02562 * 24 15 14 42 42 H 1.09004 * 117.50001 * 145.01836 * 24 15 14 43 43 H 1.08994 * 117.50427 * 214.98127 * 25 15 14 44 44 H 1.09003 * 117.49694 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 1.2442 -1.1716 2.0286 6 7 3.3574 -0.8330 1.4441 7 6 3.8457 -1.5240 2.6400 8 1 3.1729 -1.3259 3.4742 9 6 3.8980 -3.0297 2.3733 10 8 4.6852 -3.2799 1.2073 11 6 5.2270 -1.0257 2.9793 12 8 5.9480 -0.5947 2.1045 13 7 5.6609 -1.0590 4.2548 14 6 6.9607 -0.4791 4.6017 15 6 7.1702 -0.5654 6.1148 16 6 7.0288 -1.9414 6.7131 17 1 6.0663 -2.2797 7.0675 18 6 8.1280 -2.7681 6.8082 19 7 8.0103 -3.9583 7.3553 20 14 9.7844 -2.1978 6.1600 21 1 10.5009 -1.4487 7.2232 22 1 10.5910 -3.3777 5.7564 23 1 9.5784 -1.3137 4.9847 24 6 6.7100 0.6235 6.9607 25 6 8.2039 0.3737 6.7396 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6765 1.9564 0.8901 33 1 3.9877 -0.4637 0.8059 34 1 4.3456 -3.5349 3.2292 35 1 2.8872 -3.4063 2.2171 36 1 4.7615 -4.2162 0.9777 37 1 5.1125 -1.4669 4.9432 38 1 7.7518 -1.0305 4.0934 39 1 6.9876 0.5650 4.2901 40 1 8.7836 -4.5401 7.4219 41 1 6.2576 1.4670 6.4392 42 1 6.3052 0.4106 7.9501 43 1 8.7814 -0.0034 7.5836 44 1 8.7351 1.0527 6.0726 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487648267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:01 Heat of formation + Delta-G solvation = -135.552547 kcal Electronic energy + Delta-G solvation = -25013.422969 eV Core-core repulsion = 21351.195567 eV Total energy + Delta-G solvation = -3662.227401 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.57679 -40.39021 -38.83457 -37.78108 -35.51921 -35.34232 -35.08887 -34.22626 -30.95891 -28.37746 -27.92404 -27.17655 -25.39134 -23.68383 -23.32043 -21.39545 -21.06866 -20.83362 -18.96540 -18.67314 -18.20679 -17.52437 -17.21128 -17.01418 -16.58896 -16.28167 -16.04294 -15.73334 -15.25242 -14.93662 -14.79355 -14.72932 -14.39639 -14.27884 -13.96839 -13.75660 -13.49489 -13.16876 -13.11018 -12.93688 -12.76824 -12.63417 -12.17451 -12.05854 -11.99919 -11.97638 -11.60050 -11.34103 -11.01739 -10.95107 -10.77493 -10.67421 -10.40383 -10.19384 -9.90675 -8.30507 -6.37260 1.33585 1.39790 1.43030 1.48706 1.61050 1.84758 2.35675 2.41861 3.04613 3.17441 3.23038 3.58926 3.73149 3.90885 4.00009 4.01395 4.07560 4.29006 4.35048 4.35631 4.38772 4.45585 4.53310 4.54979 4.77615 4.80070 4.85907 4.88468 4.95483 5.08404 5.08912 5.20610 5.25305 5.31240 5.38241 5.47018 5.49999 5.69290 6.27579 6.46414 6.57303 6.71938 6.77064 7.14574 7.17248 7.34034 8.83583 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.003770 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.552936 B = 7425.875947 C = 7842.189759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.108 4.108 3 C -0.143 4.143 4 C 0.515 3.485 5 O -0.578 6.578 6 N -0.697 5.697 7 C 0.133 3.867 8 H 0.124 0.876 9 C 0.074 3.926 10 O -0.576 6.576 11 C 0.512 3.488 12 O -0.569 6.569 13 N -0.697 5.697 14 C 0.165 3.835 15 C -0.040 4.040 16 C -0.480 4.480 17 H 0.049 0.951 18 C 0.030 3.970 19 N -0.941 5.941 20 Si 0.929 3.071 21 H -0.266 1.266 22 H -0.304 1.304 23 H -0.245 1.245 24 C -0.154 4.154 25 C -0.194 4.194 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.118 0.882 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.414 0.586 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.397 0.603 37 H 0.411 0.589 38 H 0.038 0.962 39 H 0.063 0.937 40 H 0.264 0.736 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.855 8.350 -14.602 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.129 4.129 3 C -0.200 4.200 4 C 0.304 3.696 5 O -0.458 6.458 6 N -0.350 5.350 7 C 0.024 3.976 8 H 0.141 0.859 9 C -0.005 4.005 10 O -0.384 6.384 11 C 0.297 3.703 12 O -0.449 6.449 13 N -0.346 5.346 14 C 0.041 3.959 15 C -0.041 4.041 16 C -0.518 4.518 17 H 0.067 0.933 18 C -0.168 4.168 19 N -0.580 5.580 20 Si 0.755 3.245 21 H -0.191 1.191 22 H -0.232 1.232 23 H -0.169 1.169 24 C -0.191 4.191 25 C -0.232 4.232 26 H 0.106 0.894 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.136 0.864 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.252 0.748 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.246 0.754 37 H 0.247 0.753 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.120 0.880 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.739 8.842 -14.570 20.144 hybrid contribution 1.126 -1.187 0.411 1.687 sum -9.613 7.655 -14.159 18.748 Atomic orbital electron populations 1.21611 0.92039 1.02317 1.02719 1.21365 0.98490 0.97864 0.95194 1.21811 1.01416 0.93156 1.03664 1.21439 0.81090 0.78682 0.88418 1.90673 1.55935 1.50680 1.48519 1.45678 1.07633 1.57675 1.24061 1.20873 0.92819 0.92550 0.91392 0.85879 1.22396 0.95908 0.93101 0.89123 1.86495 1.73736 1.32429 1.45742 1.20634 0.88908 0.78302 0.82464 1.90625 1.57893 1.48666 1.47684 1.45834 1.21079 1.58856 1.08870 1.20896 0.84047 0.96346 0.94634 1.19476 1.02948 0.91369 0.90282 1.20322 0.95678 0.96872 1.38890 0.93262 1.25663 1.02262 0.94523 0.94384 1.70006 1.31884 1.10202 1.45935 0.86070 0.80340 0.77573 0.80506 1.19131 1.23186 1.16856 1.22911 0.95648 0.99224 1.01321 1.23013 0.93000 1.03719 1.03455 0.89417 0.93044 0.93224 0.86439 0.92111 0.88972 0.92872 0.74837 0.91918 0.91155 0.75358 0.75276 0.94337 0.91928 0.92656 0.87964 0.89681 0.90344 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.48 71.98 0.61 -1.44 16 2 C -0.11 -1.79 3.26 -11.54 -0.04 -1.83 16 3 C -0.14 -1.97 9.09 71.98 0.65 -1.32 16 4 C 0.52 12.70 7.12 87.66 0.62 13.32 16 5 O -0.58 -18.01 15.64 -3.03 -0.05 -18.05 16 6 N -0.70 -17.82 4.71 -446.10 -2.10 -19.92 16 7 C 0.13 3.79 2.75 44.25 0.12 3.91 16 8 H 0.12 3.38 7.58 -2.39 -0.02 3.37 16 9 C 0.07 1.96 6.79 71.98 0.49 2.45 16 10 O -0.58 -15.33 13.17 -148.98 -1.96 -17.30 16 11 C 0.51 17.62 6.79 87.66 0.60 18.22 16 12 O -0.57 -22.56 16.06 -3.03 -0.05 -22.61 16 13 N -0.70 -25.03 5.41 -463.06 -2.50 -27.53 16 14 C 0.16 6.50 5.42 86.38 0.47 6.97 16 15 C -0.04 -1.64 1.02 -52.93 -0.05 -1.69 16 16 C -0.48 -24.55 8.69 25.60 0.22 -24.32 16 17 H 0.05 2.75 8.06 -2.91 -0.02 2.73 16 18 C 0.03 1.65 5.47 84.65 0.46 2.11 16 19 N -0.94 -55.67 13.96 21.44 0.30 -55.37 16 20 Si 0.93 43.21 24.75 68.60 1.70 44.91 16 21 H -0.27 -11.81 7.00 99.48 0.70 -11.11 16 22 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 23 H -0.24 -10.76 5.84 99.48 0.58 -10.18 16 24 C -0.15 -5.40 9.92 30.62 0.30 -5.09 16 25 C -0.19 -7.31 7.57 30.62 0.23 -7.08 16 26 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 0.92 8.10 -2.38 -0.02 0.90 16 28 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 29 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 0.88 7.56 -2.39 -0.02 0.86 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.41 10.39 7.23 -92.71 -0.67 9.72 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.40 6.96 9.12 -74.05 -0.68 6.29 16 37 H 0.41 14.28 7.96 -92.70 -0.74 13.54 16 38 H 0.04 1.70 6.68 -2.38 -0.02 1.69 16 39 H 0.06 2.27 8.09 -2.39 -0.02 2.26 16 40 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 41 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 42 H 0.08 3.05 8.14 -2.38 -0.02 3.03 16 43 H 0.08 3.17 6.91 -2.39 -0.02 3.15 16 44 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -69.39 362.99 -1.17 -70.56 By element: Atomic # 1 Polarization: 42.30 SS G_CDS: -1.19 Total: 41.11 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 4.69 Total: 4.21 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -4.31 Total: -102.82 kcal Atomic # 8 Polarization: -55.90 SS G_CDS: -2.06 Total: -57.96 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.70 Total: 44.91 kcal Total: -69.39 -1.17 -70.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487648267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.991 kcal (2) G-P(sol) polarization free energy of solvation -69.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds