Wall clock time and date at job start Tue Mar 31 2020 05:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47354 * 2 1 4 4 C 1.53000 * 109.47200 * 239.99931 * 2 1 3 5 5 C 1.53002 * 109.47514 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47098 * 60.00075 * 5 4 2 7 7 C 1.53003 * 109.47199 * 300.00149 * 6 5 4 8 8 H 1.08995 * 109.46998 * 299.99960 * 7 6 5 9 9 O 1.42898 * 109.47208 * 179.97438 * 7 6 5 10 10 C 1.42900 * 113.99575 * 90.00234 * 9 7 6 11 11 C 1.50703 * 109.47361 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 O 1.21284 * 120.00579 * 359.97438 * 15 14 13 17 17 N 1.34783 * 119.99600 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99555 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00404 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99811 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00220 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00154 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46976 * 90.00113 * 22 20 18 24 24 H 1.48495 * 109.47491 * 210.00002 * 22 20 18 25 25 H 1.48492 * 109.47419 * 330.00452 * 22 20 18 26 26 C 1.53002 * 109.47217 * 59.99924 * 7 6 5 27 27 H 1.09004 * 109.47524 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47058 * 299.99715 * 1 2 3 29 29 H 1.08993 * 109.47066 * 59.99803 * 1 2 3 30 30 H 1.09001 * 109.46889 * 59.99928 * 4 2 1 31 31 H 1.09009 * 109.47226 * 300.00178 * 4 2 1 32 32 H 1.09000 * 109.46759 * 300.00437 * 5 4 2 33 33 H 1.08994 * 109.46977 * 180.02562 * 5 4 2 34 34 H 1.08995 * 109.47438 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.47182 * 59.99788 * 6 5 4 36 36 H 1.08998 * 109.47421 * 59.99896 * 10 9 7 37 37 H 1.09002 * 109.47461 * 300.00159 * 10 9 7 38 38 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 39 39 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 40 40 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 41 41 H 0.96995 * 120.00445 * 0.02562 * 17 15 14 42 42 H 0.97000 * 120.00497 * 180.02562 * 21 20 18 43 43 H 1.09009 * 109.46929 * 59.99964 * 26 7 6 44 44 H 1.08992 * 109.47703 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2490 6 6 4.0795 -1.4435 0.0002 7 6 3.5696 -0.7222 1.2495 8 1 3.9333 0.3052 1.2497 9 8 4.0449 -1.3966 2.4163 10 6 5.3047 -0.9178 2.8914 11 6 5.7077 -1.6957 4.1176 12 8 4.9868 -2.5734 4.5430 13 7 6.8687 -1.4155 4.7421 14 6 7.2633 -2.1758 5.9305 15 6 8.5942 -1.6742 6.4288 16 8 9.1578 -0.7708 5.8481 17 7 9.1580 -2.2295 7.5198 18 6 10.3690 -1.7735 7.9727 19 1 10.8709 -0.9691 7.4556 20 6 10.9501 -2.3455 9.0978 21 7 10.3392 -3.3240 9.7274 22 14 12.5997 -1.7238 9.7154 23 1 12.3811 -0.6265 10.6920 24 1 13.3321 -2.8346 10.3748 25 1 13.3974 -1.2157 8.5706 26 6 2.0395 -0.7216 1.2493 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6766 -0.2074 -2.1392 31 1 1.6766 -1.7490 -1.2493 32 1 3.9337 0.3057 -1.2487 33 1 3.9333 -1.2353 -2.1392 34 1 5.1695 -1.4436 0.0007 35 1 3.7157 -2.4710 0.0000 36 1 5.2203 0.1394 3.1429 37 1 6.0590 -1.0475 2.1152 38 1 7.4451 -0.7133 4.4021 39 1 6.5119 -2.0479 6.7098 40 1 7.3457 -3.2323 5.6753 41 1 8.7075 -2.9522 7.9840 42 1 10.7447 -3.7231 10.5130 43 1 1.6758 -1.7493 1.2490 44 1 1.6762 -0.2075 2.1390 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553650948.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:37 Heat of formation + Delta-G solvation = -149.235252 kcal Electronic energy + Delta-G solvation = -23509.524864 eV Core-core repulsion = 19846.704136 eV Total energy + Delta-G solvation = -3662.820728 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.93109 -39.23364 -38.12872 -36.74366 -34.45541 -33.67962 -32.64487 -31.41225 -30.62584 -28.79826 -26.75477 -26.46344 -24.32794 -22.71895 -21.55340 -20.50744 -20.02637 -19.59914 -18.15345 -17.31843 -16.86958 -16.07712 -15.80613 -15.40795 -15.12450 -15.00527 -14.87324 -14.57041 -14.39748 -13.99640 -13.84728 -13.40276 -13.39288 -12.96708 -12.72344 -12.59194 -12.20816 -12.14023 -11.98544 -11.71490 -11.64711 -11.34400 -11.24545 -11.13621 -10.85211 -10.70100 -10.62270 -10.47202 -10.33330 -9.67650 -9.65383 -9.61402 -8.82553 -8.65813 -8.11964 -6.52898 -3.95109 2.78217 2.84082 3.10653 3.21273 3.26591 3.71989 3.85848 4.10940 4.32616 4.39657 4.60615 4.74964 4.77826 4.85670 4.87300 4.97353 5.06390 5.09989 5.11147 5.15309 5.16875 5.25384 5.31665 5.38956 5.50158 5.64570 5.69193 5.71489 5.83829 5.89472 5.90969 5.93054 5.94727 6.01414 6.05088 6.12994 6.63028 6.98456 7.44530 7.77487 7.90229 8.40922 8.45024 9.02813 9.37422 9.85076 10.63889 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.047717 B = 0.002056 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.649529 B =13614.071216 C =13864.744064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.070 0.930 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.143 4.143 7 C 0.088 3.912 8 H 0.061 0.939 9 O -0.356 6.356 10 C 0.046 3.954 11 C 0.511 3.489 12 O -0.529 6.529 13 N -0.707 5.707 14 C 0.111 3.889 15 C 0.428 3.572 16 O -0.598 6.598 17 N -0.548 5.548 18 C -0.306 4.306 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.894 5.894 22 Si 0.934 3.066 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.269 1.269 26 C -0.111 4.111 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.411 0.589 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.396 0.604 42 H 0.274 0.726 43 H 0.073 0.927 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.551 5.585 -19.174 25.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.089 0.911 4 C -0.155 4.155 5 C -0.155 4.155 6 C -0.181 4.181 7 C 0.030 3.970 8 H 0.079 0.921 9 O -0.274 6.274 10 C -0.034 4.034 11 C 0.296 3.704 12 O -0.405 6.405 13 N -0.363 5.363 14 C -0.017 4.017 15 C 0.213 3.787 16 O -0.485 6.485 17 N -0.183 5.183 18 C -0.435 4.435 19 H 0.123 0.877 20 C -0.178 4.178 21 N -0.534 5.534 22 Si 0.761 3.239 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.148 4.148 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.249 0.751 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.230 0.770 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.730 5.271 -18.961 25.194 hybrid contribution 1.070 0.301 0.448 1.198 sum -14.660 5.572 -18.513 24.263 Atomic orbital electron populations 1.21813 0.94828 1.02041 1.01731 1.21103 0.95771 0.99525 0.94396 0.91118 1.21647 0.95426 1.00966 0.97418 1.21490 0.95714 1.00704 0.97552 1.22065 1.00888 1.00819 0.94337 1.22173 0.94843 0.95215 0.84720 0.92067 1.88046 1.34721 1.60479 1.44143 1.22203 0.87981 0.97925 0.95263 1.20151 0.81276 0.84247 0.84728 1.90716 1.51966 1.31849 1.65934 1.45576 1.21794 1.39501 1.29444 1.20949 0.96368 0.96353 0.87992 1.19727 0.87661 0.86938 0.84324 1.90489 1.65197 1.33203 1.59618 1.41800 1.19628 1.32852 1.24023 1.19730 0.95778 1.18076 1.09919 0.87653 1.25340 1.00079 0.95988 0.96350 1.69615 1.39528 1.24110 1.20136 0.85800 0.80963 0.78199 0.78987 1.20260 1.20786 1.19322 1.21639 0.93173 1.02040 0.97964 0.92522 0.92523 0.92626 0.91889 0.91706 0.91926 0.91610 0.91717 0.90876 0.90232 0.90310 0.75135 0.89745 0.89760 0.76994 0.91556 0.90856 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 2 C -0.09 -0.60 2.72 -90.62 -0.25 -0.85 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 4 C -0.12 -0.74 5.20 -26.73 -0.14 -0.88 16 5 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 6 C -0.14 -1.23 5.54 -26.73 -0.15 -1.37 16 7 C 0.09 0.85 2.61 -26.73 -0.07 0.78 16 8 H 0.06 0.51 7.79 -51.93 -0.40 0.10 16 9 O -0.36 -4.75 9.52 -55.14 -0.52 -5.27 16 10 C 0.05 0.56 6.23 36.01 0.22 0.78 16 11 C 0.51 8.29 7.91 -10.98 -0.09 8.20 16 12 O -0.53 -10.64 16.50 -14.36 -0.24 -10.88 16 13 N -0.71 -11.66 5.53 -61.47 -0.34 -12.00 16 14 C 0.11 2.05 6.15 -5.19 -0.03 2.02 16 15 C 0.43 9.76 7.85 -10.98 -0.09 9.67 16 16 O -0.60 -15.14 15.24 5.55 0.08 -15.05 16 17 N -0.55 -13.57 5.29 -10.96 -0.06 -13.63 16 18 C -0.31 -8.27 9.68 -14.93 -0.14 -8.42 16 19 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 21 N -0.89 -23.83 13.05 55.50 0.72 -23.10 16 22 Si 0.93 20.46 29.55 -169.99 -5.02 15.43 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 C -0.11 -0.97 4.85 -26.73 -0.13 -1.10 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 37 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 38 H 0.41 6.44 7.44 -40.82 -0.30 6.13 16 39 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 363.62 15.07 5.48 5.48 Total: -1.00 -31.96 363.62 -7.94 -39.90 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -7.27 Total: 11.20 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -0.77 Total: 7.91 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.33 Total: -48.73 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.68 Total: -31.20 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.96 -7.94 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553650948.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.337 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds