Wall clock time and date at job start Tue Mar 31 2020 05:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.04772 * 2 1 4 4 O 1.43898 * 109.90683 * 238.82767 * 2 1 3 5 5 C 1.44427 * 106.98857 * 214.24809 * 4 2 1 6 6 C 1.55102 * 103.55694 * 39.74496 * 5 4 2 7 7 C 1.53578 * 109.90623 * 121.17669 * 2 1 3 8 8 C 1.52475 * 110.45295 * 3.11479 * 7 2 1 9 9 N 1.47112 * 109.37139 * 292.08305 * 8 7 2 10 10 C 1.46899 * 110.99911 * 178.74035 * 9 8 7 11 11 C 1.50702 * 109.46937 * 64.66794 * 10 9 8 12 12 O 1.21288 * 120.00194 * 354.16897 * 11 10 9 13 13 N 1.34776 * 119.99830 * 174.17139 * 11 10 9 14 14 C 1.37100 * 119.99853 * 180.02562 * 13 11 10 15 15 H 1.08005 * 120.00330 * 359.97438 * 14 13 11 16 16 C 1.38952 * 120.00425 * 179.97438 * 14 13 11 17 17 N 1.31417 * 119.99550 * 359.97438 * 16 14 13 18 18 Si 1.86788 * 120.00526 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47355 * 59.99512 * 18 16 14 20 20 H 1.48496 * 109.47461 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.47109 * 300.00009 * 18 16 14 22 22 C 1.47019 * 110.68844 * 302.46985 * 9 8 7 23 23 C 1.53102 * 109.32098 * 59.17457 * 22 9 8 24 24 H 1.08996 * 109.51652 * 62.49054 * 23 22 9 25 25 C 1.53002 * 109.51388 * 182.65377 * 23 22 9 26 26 O 1.42315 * 110.58170 * 240.04145 * 7 2 1 27 27 H 1.08998 * 109.46751 * 298.83030 * 1 2 3 28 28 H 1.09001 * 109.46941 * 58.82892 * 1 2 3 29 29 H 1.08999 * 109.46825 * 178.82572 * 1 2 3 30 30 H 1.09001 * 110.60528 * 281.22466 * 5 4 2 31 31 H 1.09005 * 110.73728 * 158.32327 * 5 4 2 32 32 H 1.08994 * 110.92961 * 205.20959 * 6 5 4 33 33 H 1.09004 * 110.92939 * 81.55027 * 6 5 4 34 34 H 1.09000 * 109.48388 * 172.11695 * 8 7 2 35 35 H 1.08997 * 109.50471 * 52.06256 * 8 7 2 36 36 H 1.09000 * 109.47558 * 184.66800 * 10 9 8 37 37 H 1.09001 * 109.47418 * 304.66490 * 10 9 8 38 38 H 0.97000 * 120.00397 * 359.97438 * 13 11 10 39 39 H 0.96997 * 119.99815 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.49202 * 179.12785 * 22 9 8 41 41 H 1.08994 * 109.49875 * 299.21821 * 22 9 8 42 42 H 1.09001 * 109.46881 * 179.72338 * 25 23 22 43 43 H 1.08993 * 109.47430 * 299.71987 * 25 23 22 44 44 H 1.09003 * 109.46924 * 59.72153 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 8 2.0200 -0.7003 -1.1576 5 6 3.2372 -1.3696 -0.7621 6 6 2.9193 -1.8897 0.6641 7 6 2.0530 -0.7475 1.2355 8 6 0.8931 -1.3247 2.0395 9 7 0.1186 -0.2257 2.6365 10 6 -1.0279 -0.7418 3.3963 11 6 -0.5315 -1.5478 4.5690 12 8 0.6545 -1.7684 4.6947 13 7 -1.4055 -2.0235 5.4779 14 6 -0.9538 -2.7563 6.5450 15 1 0.1023 -2.9527 6.6570 16 6 -1.8548 -3.2464 7.4825 17 7 -3.1398 -3.0070 7.3465 18 14 -1.2396 -4.2454 8.9360 19 1 -0.2982 -3.4238 9.7384 20 1 -2.3909 -4.6474 9.7832 21 1 -0.5402 -5.4588 8.4421 22 6 0.9773 0.6143 3.4841 23 6 2.1168 1.1891 2.6385 24 1 1.7043 1.8269 1.8568 25 6 3.0506 2.0104 3.5299 26 8 2.8489 0.1138 2.0417 27 1 -0.3633 0.4956 0.9003 28 1 -0.3633 0.5319 -0.8793 29 1 -0.3633 -1.0275 -0.0211 30 1 4.0705 -0.6673 -0.7375 31 1 3.4566 -2.2001 -1.4332 32 1 3.8326 -2.0141 1.2457 33 1 2.3561 -2.8220 0.6220 34 1 1.2824 -1.9665 2.8298 35 1 0.2489 -1.9080 1.3815 36 1 -1.6296 0.0923 3.7574 37 1 -1.6358 -1.3758 2.7509 38 1 -2.3540 -1.8468 5.3776 39 1 -3.7687 -3.3488 8.0011 40 1 0.3883 1.4299 3.9035 41 1 1.3921 0.0117 4.2921 42 1 3.8643 2.4153 2.9280 43 1 2.4925 2.8291 3.9840 44 1 3.4604 1.3719 4.3125 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565755496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:15 Heat of formation + Delta-G solvation = -103.496311 kcal Electronic energy + Delta-G solvation = -26364.050782 eV Core-core repulsion = 22703.213443 eV Total energy + Delta-G solvation = -3660.837338 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92848 -38.78594 -37.51386 -35.26812 -33.84793 -33.17017 -31.44431 -31.34009 -30.49025 -27.82376 -26.69748 -25.31081 -24.52581 -22.53284 -22.30619 -21.19231 -19.39513 -19.05108 -17.93300 -17.23825 -16.24438 -16.06331 -15.59420 -15.31429 -15.15649 -14.81107 -14.38991 -14.10202 -13.87862 -13.85715 -13.60722 -13.25070 -12.60576 -12.52093 -12.36954 -12.17925 -11.94911 -11.77673 -11.69110 -11.56649 -11.32518 -11.25435 -11.10674 -10.87120 -10.71811 -10.64359 -10.51229 -10.32082 -10.08684 -9.70668 -9.51598 -9.31809 -9.09276 -8.06040 -7.46735 -6.51268 -3.92848 3.12217 3.19826 3.23814 3.66161 3.74814 3.97811 4.09543 4.14079 4.62189 4.79973 4.85455 4.94286 5.11947 5.15728 5.17696 5.23684 5.32611 5.38333 5.50853 5.63629 5.67139 5.69511 5.70553 5.81324 5.89638 5.93511 5.95190 5.98519 6.01504 6.10568 6.14435 6.24465 6.26277 6.50340 6.60912 6.75679 6.94182 7.16901 7.22807 7.44397 7.45404 7.94332 8.49018 9.06761 9.42273 9.92623 10.65055 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.022607 B = 0.004012 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.230346 B = 6977.049173 C = 7159.738539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.061 3.939 3 H 0.067 0.933 4 O -0.378 6.378 5 C 0.049 3.951 6 C -0.143 4.143 7 C 0.100 3.900 8 C 0.017 3.983 9 N -0.504 5.504 10 C 0.037 3.963 11 C 0.404 3.596 12 O -0.592 6.592 13 N -0.554 5.554 14 C -0.304 4.304 15 H 0.102 0.898 16 C 0.026 3.974 17 N -0.897 5.897 18 Si 0.931 3.069 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.273 1.273 22 C 0.001 3.999 23 C 0.091 3.909 24 H 0.059 0.941 25 C -0.142 4.142 26 O -0.365 6.365 27 H 0.116 0.884 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.393 0.607 39 H 0.274 0.726 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.612 6.966 -11.858 15.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.003 3.997 3 H 0.085 0.915 4 O -0.297 6.297 5 C -0.028 4.028 6 C -0.181 4.181 7 C 0.059 3.941 8 C -0.110 4.110 9 N -0.227 5.227 10 C -0.095 4.095 11 C 0.190 3.810 12 O -0.479 6.479 13 N -0.189 5.189 14 C -0.434 4.434 15 H 0.120 0.880 16 C -0.177 4.177 17 N -0.538 5.538 18 Si 0.757 3.243 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.199 1.199 22 C -0.127 4.127 23 C 0.033 3.967 24 H 0.077 0.923 25 C -0.200 4.200 26 O -0.285 6.285 27 H 0.134 0.866 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.226 0.774 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.119 7.030 -12.198 15.776 hybrid contribution -0.294 -0.890 1.554 1.815 sum 6.825 6.140 -10.644 14.056 Atomic orbital electron populations 1.22427 0.92409 1.03067 1.03954 1.23245 0.96445 0.95471 0.84552 0.91527 1.88901 1.39682 1.67606 1.33534 1.23518 0.88098 0.96305 0.94878 1.23055 1.01185 0.97509 0.96305 1.22332 0.91189 0.90154 0.90376 1.22875 0.94584 0.94349 0.99219 1.62987 1.09150 1.19489 1.31061 1.22089 0.94054 0.99180 0.94149 1.21005 0.87370 0.86211 0.86421 1.90419 1.16199 1.63533 1.77763 1.42050 1.09160 1.45946 1.21708 1.19663 0.95082 1.28168 1.00462 0.88019 1.25288 0.94938 0.98085 0.99369 1.69601 1.01372 1.45714 1.37102 0.85920 0.78026 0.79892 0.80423 1.19860 1.20857 1.19856 1.23081 0.94700 0.97817 0.97082 1.22145 0.91923 0.88081 0.94508 0.92303 1.21719 0.99396 0.99305 0.99576 1.87884 1.34986 1.40503 1.65104 0.86585 0.93718 0.92400 0.92194 0.89085 0.89017 0.89185 0.89266 0.90118 0.89106 0.89083 0.77354 0.91648 0.90751 0.89249 0.92075 0.91073 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.32 37.16 0.31 -1.83 16 2 C 0.06 0.85 3.29 -26.43 -0.09 0.76 16 3 H 0.07 0.95 6.92 -51.93 -0.36 0.59 16 4 O -0.38 -5.44 11.20 -35.23 -0.39 -5.84 16 5 C 0.05 0.58 7.73 38.27 0.30 0.87 16 6 C -0.14 -1.86 6.43 -24.93 -0.16 -2.02 16 7 C 0.10 1.48 0.96 -89.90 -0.09 1.40 16 8 C 0.02 0.28 3.24 -3.98 -0.01 0.27 16 9 N -0.50 -7.91 2.06 -236.06 -0.49 -8.39 16 10 C 0.04 0.62 5.87 -4.98 -0.03 0.59 16 11 C 0.40 8.91 7.15 -10.99 -0.08 8.83 16 12 O -0.59 -14.72 11.16 5.55 0.06 -14.66 16 13 N -0.55 -13.43 5.29 -10.96 -0.06 -13.49 16 14 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 15 H 0.10 2.89 7.16 -52.48 -0.38 2.52 16 16 C 0.03 0.67 5.50 -17.46 -0.10 0.57 16 17 N -0.90 -23.81 13.05 55.50 0.72 -23.08 16 18 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 C 0.00 0.02 4.50 -3.71 -0.02 0.00 16 23 C 0.09 1.29 3.13 -26.68 -0.08 1.21 16 24 H 0.06 0.78 6.87 -51.93 -0.36 0.43 16 25 C -0.14 -1.72 9.57 37.16 0.36 -1.37 16 26 O -0.37 -5.80 9.84 -35.23 -0.35 -6.14 16 27 H 0.12 1.57 5.45 -51.93 -0.28 1.28 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.78 6.49 -51.93 -0.34 0.44 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.17 8.06 -51.93 -0.42 0.76 16 33 H 0.09 1.12 7.84 -51.93 -0.41 0.71 16 34 H 0.09 1.80 5.59 -51.93 -0.29 1.51 16 35 H 0.08 1.25 6.33 -51.93 -0.33 0.92 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 38 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 39 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.80 5.55 -51.93 -0.29 1.51 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 334.59 15.07 5.04 5.04 Total: -1.00 -29.52 334.59 -7.02 -36.54 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -6.71 Total: 13.49 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 0.17 Total: 0.93 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.18 Total: -44.97 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.68 Total: -26.64 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.52 -7.02 -36.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565755496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.953 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds