Wall clock time and date at job start Tue Mar 31 2020 05:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.44410 * 2 1 4 4 O 1.44553 * 110.39459 * 122.36409 * 2 1 3 5 5 C 1.44477 * 105.37406 * 158.79599 * 4 2 1 6 6 C 1.54600 * 104.82041 * 319.83328 * 5 4 2 7 7 C 1.53951 * 110.39428 * 237.63724 * 2 1 3 8 8 C 1.52459 * 110.27620 * 336.09903 * 7 2 1 9 9 N 1.47138 * 109.29931 * 177.77520 * 8 7 2 10 10 C 1.46897 * 111.00071 * 178.71080 * 9 8 7 11 11 C 1.50700 * 109.47264 * 189.59415 * 10 9 8 12 12 O 1.21297 * 119.99672 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99948 * 180.02562 * 11 10 9 14 14 C 1.37093 * 119.99800 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99884 * 359.97438 * 14 13 11 16 16 C 1.38951 * 120.00222 * 179.97438 * 14 13 11 17 17 N 1.31418 * 119.99542 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00225 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46988 * 90.00621 * 18 16 14 20 20 H 1.48502 * 109.47318 * 210.00072 * 18 16 14 21 21 H 1.48496 * 109.47485 * 330.00159 * 18 16 14 22 22 C 1.47016 * 110.68176 * 302.43631 * 9 8 7 23 23 C 1.53103 * 109.37092 * 59.10446 * 22 9 8 24 24 H 1.09004 * 109.51836 * 62.55412 * 23 22 9 25 25 C 1.52992 * 109.51785 * 182.66471 * 23 22 9 26 26 O 1.42299 * 110.39766 * 98.91958 * 7 2 1 27 27 H 1.09000 * 109.47099 * 182.36425 * 1 2 3 28 28 H 1.08995 * 109.47474 * 302.36329 * 1 2 3 29 29 H 1.09000 * 109.46930 * 62.36250 * 1 2 3 30 30 H 1.09002 * 110.36442 * 200.99983 * 5 4 2 31 31 H 1.08996 * 110.45983 * 78.71741 * 5 4 2 32 32 H 1.08993 * 110.55096 * 265.29870 * 6 5 4 33 33 H 1.09002 * 110.54159 * 142.49279 * 6 5 4 34 34 H 1.09001 * 109.49467 * 57.83021 * 8 7 2 35 35 H 1.09000 * 109.50309 * 297.71972 * 8 7 2 36 36 H 1.09001 * 109.47059 * 309.59587 * 10 9 8 37 37 H 1.09002 * 109.47393 * 69.59053 * 10 9 8 38 38 H 0.96992 * 119.99988 * 359.97438 * 13 11 10 39 39 H 0.96995 * 119.99903 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.48182 * 179.07138 * 22 9 8 41 41 H 1.08992 * 109.48750 * 299.13226 * 22 9 8 42 42 H 1.08998 * 109.46963 * 59.99798 * 25 23 22 43 43 H 1.09000 * 109.47153 * 179.97438 * 25 23 22 44 44 H 1.08998 * 109.47136 * 299.99812 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9107 1.0214 0.0000 4 8 2.0337 -0.7253 1.1445 5 6 3.3845 -1.1008 0.7957 6 6 3.3082 -1.5151 -0.6918 7 6 2.0664 -0.7724 -1.2189 8 6 1.0250 -1.7708 -1.7119 9 7 1.5380 -2.4582 -2.9074 10 6 0.5744 -3.4530 -3.3969 11 6 1.2209 -4.2947 -4.4667 12 8 2.3713 -4.0860 -4.7899 13 7 0.5206 -5.2786 -5.0650 14 6 1.1087 -6.0440 -6.0386 15 1 2.1329 -5.8582 -6.3264 16 6 0.3869 -7.0588 -6.6551 17 7 -0.8595 -7.2845 -6.3053 18 14 1.1879 -8.1012 -7.9822 19 1 1.8386 -9.2816 -7.3590 20 1 0.1535 -8.5571 -8.9452 21 1 2.2084 -7.2936 -8.6975 22 6 1.8745 -1.4883 -3.9597 23 6 2.9315 -0.5139 -3.4332 24 1 3.8426 -1.0610 -3.1908 25 6 3.2356 0.5372 -4.5025 26 8 2.4331 0.1303 -2.2560 27 1 -0.3633 -1.0268 0.0424 28 1 -0.3634 0.5501 0.8680 29 1 -0.3633 0.4767 -0.9104 30 1 3.7145 -1.9407 1.4070 31 1 4.0594 -0.2539 0.9196 32 1 3.1763 -2.5932 -0.7824 33 1 4.2022 -1.1919 -1.2251 34 1 0.1049 -1.2428 -1.9625 35 1 0.8237 -2.5028 -0.9297 36 1 0.2611 -4.0922 -2.5714 37 1 -0.2952 -2.9431 -3.8117 38 1 -0.3993 -5.4452 -4.8068 39 1 -1.3635 -7.9926 -6.7359 40 1 2.2673 -2.0163 -4.8286 41 1 0.9794 -0.9351 -4.2440 42 1 2.3246 1.0851 -4.7429 43 1 3.9879 1.2307 -4.1267 44 1 3.6109 0.0448 -5.3996 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565755497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:20 Heat of formation + Delta-G solvation = -113.507914 kcal Electronic energy + Delta-G solvation = -25786.056770 eV Core-core repulsion = 22124.785296 eV Total energy + Delta-G solvation = -3661.271474 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.89317 -38.63938 -37.74205 -35.33963 -33.87404 -33.29478 -31.69616 -31.28542 -30.58660 -28.01030 -26.80050 -25.36294 -24.65892 -22.89166 -22.44328 -21.04665 -19.23584 -19.09641 -17.88147 -17.24606 -16.14893 -16.12191 -15.77886 -15.54323 -15.42492 -14.78992 -14.42479 -14.35906 -13.90640 -13.72195 -13.64054 -13.19481 -12.97496 -12.57935 -12.48082 -12.37249 -12.32713 -12.12583 -11.76614 -11.57223 -11.50989 -11.34774 -11.20910 -10.95152 -10.84820 -10.82192 -10.41533 -10.29550 -10.23941 -9.82459 -9.54599 -9.47640 -8.45548 -8.01396 -7.90590 -6.44173 -3.85130 3.15892 3.24833 3.30145 3.46708 3.72799 3.85854 3.91757 4.19996 4.47367 4.66500 4.72771 4.93850 5.00842 5.04015 5.11750 5.18350 5.22110 5.27938 5.35317 5.40360 5.45149 5.52147 5.58905 5.66618 5.68988 5.71400 5.77839 5.86832 5.89157 5.95069 6.00443 6.09057 6.13294 6.19728 6.23798 6.32993 6.62621 7.17023 7.20525 7.35718 7.52751 8.03459 8.58773 9.15327 9.51476 10.02880 10.73541 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.023884 B = 0.003597 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.074185 B = 7783.071162 C = 8212.838639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.088 3.912 3 H 0.080 0.920 4 O -0.368 6.368 5 C 0.046 3.954 6 C -0.171 4.171 7 C 0.099 3.901 8 C 0.034 3.966 9 N -0.512 5.512 10 C 0.046 3.954 11 C 0.444 3.556 12 O -0.579 6.579 13 N -0.563 5.563 14 C -0.299 4.299 15 H 0.103 0.897 16 C 0.023 3.977 17 N -0.901 5.901 18 Si 0.930 3.070 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.270 1.270 22 C 0.022 3.978 23 C 0.091 3.909 24 H 0.070 0.930 25 C -0.142 4.142 26 O -0.372 6.372 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.114 0.886 41 H 0.031 0.969 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.699 14.157 10.675 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.029 3.971 3 H 0.098 0.902 4 O -0.288 6.288 5 C -0.030 4.030 6 C -0.209 4.209 7 C 0.058 3.942 8 C -0.094 4.094 9 N -0.236 5.236 10 C -0.085 4.085 11 C 0.229 3.771 12 O -0.463 6.463 13 N -0.199 5.199 14 C -0.429 4.429 15 H 0.121 0.879 16 C -0.179 4.179 17 N -0.543 5.543 18 Si 0.757 3.243 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.106 4.106 23 C 0.034 3.966 24 H 0.088 0.912 25 C -0.199 4.199 26 O -0.292 6.292 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.132 0.868 41 H 0.049 0.951 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.630 14.044 10.712 18.032 hybrid contribution -0.885 -0.613 -0.956 1.440 sum 2.745 13.430 9.756 16.825 Atomic orbital electron populations 1.21892 0.92706 1.03299 1.02566 1.22712 0.95387 0.95619 0.83344 0.90228 1.89176 1.27862 1.74476 1.37255 1.23413 0.84431 0.99785 0.95412 1.23408 0.98733 1.02981 0.95758 1.22304 0.93928 0.89489 0.88434 1.22771 0.95926 0.96442 0.94255 1.61824 1.42045 1.14371 1.05386 1.21868 0.93264 0.94752 0.98642 1.19690 0.87650 0.84102 0.85618 1.90472 1.17796 1.71290 1.66745 1.41864 1.14366 1.29284 1.34421 1.19693 0.99069 1.11015 1.13108 0.87903 1.25263 0.95562 0.97979 0.99080 1.69613 1.08750 1.32679 1.43223 0.85859 0.78585 0.79794 0.80063 1.20379 1.20930 1.19422 1.22975 0.97763 0.93272 0.96591 1.22228 0.96507 0.93081 0.84818 0.91165 1.21725 1.02144 0.98523 0.97533 1.87818 1.83922 1.32907 1.24516 0.91238 0.91698 0.90797 0.88926 0.92304 0.88772 0.89835 0.93679 0.89451 0.89235 0.93384 0.77484 0.91846 0.86785 0.95104 0.92080 0.91919 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.33 37.15 0.31 -1.17 16 2 C 0.09 1.02 3.59 -26.24 -0.09 0.93 16 3 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 4 O -0.37 -4.61 11.35 -35.23 -0.40 -5.01 16 5 C 0.05 0.50 7.65 38.00 0.29 0.79 16 6 C -0.17 -2.14 5.78 -25.37 -0.15 -2.29 16 7 C 0.10 1.29 0.96 -89.88 -0.09 1.21 16 8 C 0.03 0.47 2.87 -3.97 -0.01 0.46 16 9 N -0.51 -8.58 4.22 -236.05 -1.00 -9.58 16 10 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 11 C 0.44 10.30 7.49 -10.99 -0.08 10.22 16 12 O -0.58 -15.15 13.90 5.54 0.08 -15.07 16 13 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 14 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 15 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 16 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 17 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 18 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 C 0.02 0.36 4.56 -3.71 -0.02 0.34 16 23 C 0.09 1.30 3.12 -26.68 -0.08 1.21 16 24 H 0.07 1.06 6.79 -51.93 -0.35 0.71 16 25 C -0.14 -1.67 9.57 37.15 0.36 -1.31 16 26 O -0.37 -5.21 9.88 -35.23 -0.35 -5.56 16 27 H 0.07 0.70 6.69 -51.93 -0.35 0.36 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.71 7.69 -51.93 -0.40 0.31 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.31 7.65 -51.93 -0.40 0.91 16 33 H 0.08 1.04 6.85 -51.93 -0.36 0.69 16 34 H 0.05 0.60 6.49 -51.93 -0.34 0.26 16 35 H 0.09 1.17 7.78 -51.93 -0.40 0.77 16 36 H 0.09 1.46 8.06 -51.93 -0.42 1.04 16 37 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 38 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.11 2.23 5.84 -51.93 -0.30 1.93 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -30.39 343.50 -7.63 -38.02 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.95 Total: 10.66 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 0.17 Total: 3.32 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.33 Total: -47.36 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.67 Total: -25.65 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.39 -7.63 -38.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565755497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.491 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds