Wall clock time and date at job start Tue Mar 31 2020 05:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.44410 * 2 1 4 4 O 1.44553 * 110.39459 * 122.36409 * 2 1 3 5 5 C 1.44477 * 105.37406 * 158.79599 * 4 2 1 6 6 C 1.54600 * 104.82041 * 319.83328 * 5 4 2 7 7 C 1.53951 * 110.39428 * 237.63724 * 2 1 3 8 8 C 1.52459 * 110.27620 * 336.09903 * 7 2 1 9 9 N 1.47138 * 109.29931 * 177.77520 * 8 7 2 10 10 C 1.46897 * 111.00071 * 178.71080 * 9 8 7 11 11 C 1.50700 * 109.47264 * 189.59415 * 10 9 8 12 12 O 1.21297 * 119.99672 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99948 * 180.02562 * 11 10 9 14 14 C 1.37093 * 119.99800 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99884 * 359.97438 * 14 13 11 16 16 C 1.38951 * 120.00222 * 179.97438 * 14 13 11 17 17 N 1.31418 * 119.99542 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00225 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46988 * 90.00621 * 18 16 14 20 20 H 1.48502 * 109.47318 * 210.00072 * 18 16 14 21 21 H 1.48496 * 109.47485 * 330.00159 * 18 16 14 22 22 C 1.47016 * 110.68176 * 302.43631 * 9 8 7 23 23 C 1.53103 * 109.37092 * 59.10446 * 22 9 8 24 24 H 1.09004 * 109.51836 * 62.55412 * 23 22 9 25 25 C 1.52992 * 109.51785 * 182.66471 * 23 22 9 26 26 O 1.42299 * 110.39766 * 98.91958 * 7 2 1 27 27 H 1.09000 * 109.47099 * 182.36425 * 1 2 3 28 28 H 1.08995 * 109.47474 * 302.36329 * 1 2 3 29 29 H 1.09000 * 109.46930 * 62.36250 * 1 2 3 30 30 H 1.09002 * 110.36442 * 200.99983 * 5 4 2 31 31 H 1.08996 * 110.45983 * 78.71741 * 5 4 2 32 32 H 1.08993 * 110.55096 * 265.29870 * 6 5 4 33 33 H 1.09002 * 110.54159 * 142.49279 * 6 5 4 34 34 H 1.09001 * 109.49467 * 57.83021 * 8 7 2 35 35 H 1.09000 * 109.50309 * 297.71972 * 8 7 2 36 36 H 1.09001 * 109.47059 * 309.59587 * 10 9 8 37 37 H 1.09002 * 109.47393 * 69.59053 * 10 9 8 38 38 H 0.96992 * 119.99988 * 359.97438 * 13 11 10 39 39 H 0.96995 * 119.99903 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.48182 * 179.07138 * 22 9 8 41 41 H 1.08992 * 109.48750 * 299.13226 * 22 9 8 42 42 H 1.08998 * 109.46963 * 59.99798 * 25 23 22 43 43 H 1.09000 * 109.47153 * 179.97438 * 25 23 22 44 44 H 1.08998 * 109.47136 * 299.99812 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9107 1.0214 0.0000 4 8 2.0337 -0.7253 1.1445 5 6 3.3845 -1.1008 0.7957 6 6 3.3082 -1.5151 -0.6918 7 6 2.0664 -0.7724 -1.2189 8 6 1.0250 -1.7708 -1.7119 9 7 1.5380 -2.4582 -2.9074 10 6 0.5744 -3.4530 -3.3969 11 6 1.2209 -4.2947 -4.4667 12 8 2.3713 -4.0860 -4.7899 13 7 0.5206 -5.2786 -5.0650 14 6 1.1087 -6.0440 -6.0386 15 1 2.1329 -5.8582 -6.3264 16 6 0.3869 -7.0588 -6.6551 17 7 -0.8595 -7.2845 -6.3053 18 14 1.1879 -8.1012 -7.9822 19 1 1.8386 -9.2816 -7.3590 20 1 0.1535 -8.5571 -8.9452 21 1 2.2084 -7.2936 -8.6975 22 6 1.8745 -1.4883 -3.9597 23 6 2.9315 -0.5139 -3.4332 24 1 3.8426 -1.0610 -3.1908 25 6 3.2356 0.5372 -4.5025 26 8 2.4331 0.1303 -2.2560 27 1 -0.3633 -1.0268 0.0424 28 1 -0.3634 0.5501 0.8680 29 1 -0.3633 0.4767 -0.9104 30 1 3.7145 -1.9407 1.4070 31 1 4.0594 -0.2539 0.9196 32 1 3.1763 -2.5932 -0.7824 33 1 4.2022 -1.1919 -1.2251 34 1 0.1049 -1.2428 -1.9625 35 1 0.8237 -2.5028 -0.9297 36 1 0.2611 -4.0922 -2.5714 37 1 -0.2952 -2.9431 -3.8117 38 1 -0.3993 -5.4452 -4.8068 39 1 -1.3635 -7.9926 -6.7359 40 1 2.2673 -2.0163 -4.8286 41 1 0.9794 -0.9351 -4.2440 42 1 2.3246 1.0851 -4.7429 43 1 3.9879 1.2307 -4.1267 44 1 3.6109 0.0448 -5.3996 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565755497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:19 Heat of formation + Delta-G solvation = -136.087143 kcal Electronic energy + Delta-G solvation = -25787.035879 eV Core-core repulsion = 22124.785296 eV Total energy + Delta-G solvation = -3662.250583 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.96809 -40.23922 -39.01795 -36.73197 -35.79636 -34.34323 -33.29348 -32.58145 -31.69073 -29.43328 -27.91077 -26.83324 -26.01070 -24.08569 -23.60605 -22.05248 -21.02958 -20.23057 -19.87838 -18.36488 -17.67536 -17.30176 -16.84440 -16.76518 -16.54349 -16.44689 -15.92932 -15.70713 -15.43807 -15.16293 -14.94938 -14.37198 -14.13007 -13.98074 -13.56161 -13.49722 -13.35239 -13.31782 -13.16733 -13.00491 -12.81729 -12.67271 -12.42501 -12.34690 -12.22632 -12.12516 -11.94091 -11.82701 -11.48595 -11.31261 -10.75727 -10.72298 -10.20797 -10.00714 -9.31111 -8.47139 -5.95783 1.37381 1.41482 1.53891 2.03184 2.25979 2.42522 2.59092 2.90990 3.19441 3.30432 3.49483 3.66221 3.76427 3.87032 4.03017 4.12424 4.16755 4.25416 4.29240 4.33546 4.36082 4.39733 4.45635 4.55297 4.58564 4.63031 4.66219 4.82412 4.84154 4.87785 4.95254 5.01478 5.06084 5.10824 5.22988 5.24286 5.40457 5.70366 5.78408 5.95973 6.05523 6.24142 6.59404 7.12094 7.55047 8.10321 8.70344 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.023884 B = 0.003597 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.074185 B = 7783.071162 C = 8212.838639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.090 3.910 3 H 0.085 0.915 4 O -0.380 6.380 5 C 0.049 3.951 6 C -0.171 4.171 7 C 0.093 3.907 8 C 0.038 3.962 9 N -0.527 5.527 10 C 0.057 3.943 11 C 0.443 3.557 12 O -0.612 6.612 13 N -0.573 5.573 14 C -0.331 4.331 15 H 0.080 0.920 16 C -0.012 4.012 17 N -0.921 5.921 18 Si 0.992 3.008 19 H -0.272 1.272 20 H -0.271 1.271 21 H -0.272 1.272 22 C 0.026 3.974 23 C 0.096 3.904 24 H 0.058 0.942 25 C -0.137 4.137 26 O -0.371 6.371 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.395 0.605 39 H 0.277 0.723 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.279 14.992 11.497 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.032 3.968 3 H 0.103 0.897 4 O -0.300 6.300 5 C -0.027 4.027 6 C -0.209 4.209 7 C 0.053 3.947 8 C -0.090 4.090 9 N -0.252 5.252 10 C -0.074 4.074 11 C 0.230 3.770 12 O -0.498 6.498 13 N -0.211 5.211 14 C -0.461 4.461 15 H 0.098 0.902 16 C -0.212 4.212 17 N -0.562 5.562 18 Si 0.816 3.184 19 H -0.197 1.197 20 H -0.196 1.196 21 H -0.197 1.197 22 C -0.102 4.102 23 C 0.038 3.962 24 H 0.076 0.924 25 C -0.194 4.194 26 O -0.291 6.291 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.124 0.876 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.128 0.872 37 H 0.084 0.916 38 H 0.229 0.771 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.193 14.890 11.557 19.118 hybrid contribution -0.728 -0.840 -1.164 1.610 sum 2.466 14.050 10.392 17.649 Atomic orbital electron populations 1.21905 0.91453 1.03508 1.03469 1.22770 0.96383 0.95413 0.82224 0.89701 1.89168 1.28585 1.74644 1.37558 1.23499 0.84169 1.00891 0.94188 1.23359 0.98490 1.01817 0.97197 1.22459 0.93948 0.89584 0.88734 1.22828 0.96585 0.96654 0.92897 1.61782 1.42321 1.14843 1.06249 1.21744 0.93380 0.94788 0.97477 1.20629 0.87213 0.83467 0.85659 1.90454 1.19500 1.72012 1.67820 1.41924 1.14608 1.29885 1.34636 1.19654 0.98669 1.12772 1.15003 0.90214 1.26023 0.96035 0.98466 1.00657 1.69675 1.09496 1.33099 1.43942 0.84939 0.77862 0.78061 0.77561 1.19713 1.19603 1.19687 1.22862 0.98467 0.93266 0.95645 1.22167 0.95090 0.93304 0.85592 0.92423 1.21712 1.02917 0.98077 0.96734 1.87825 1.83834 1.33010 1.24433 0.91404 0.90407 0.90285 0.87603 0.90828 0.90505 0.90165 0.92539 0.88863 0.87191 0.91558 0.77084 0.91318 0.90271 0.94627 0.91483 0.90322 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.33 71.98 0.60 -1.97 16 2 C 0.09 1.91 3.59 30.91 0.11 2.02 16 3 H 0.09 1.72 8.07 -2.39 -0.02 1.70 16 4 O -0.38 -8.69 11.35 -148.98 -1.69 -10.38 16 5 C 0.05 0.97 7.65 72.53 0.55 1.52 16 6 C -0.17 -4.12 5.78 31.48 0.18 -3.94 16 7 C 0.09 2.29 0.96 -10.31 -0.01 2.28 16 8 C 0.04 0.99 2.87 86.08 0.25 1.23 16 9 N -0.53 -17.42 4.22 -900.74 -3.80 -21.22 16 10 C 0.06 2.01 5.45 85.56 0.47 2.47 16 11 C 0.44 20.94 7.49 87.66 0.66 21.60 16 12 O -0.61 -33.13 13.90 -3.08 -0.04 -33.17 16 13 N -0.57 -29.28 5.29 -306.98 -1.62 -30.90 16 14 C -0.33 -18.69 9.68 84.04 0.81 -17.87 16 15 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 16 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 17 N -0.92 -49.57 13.05 21.66 0.28 -49.29 16 18 Si 0.99 42.71 29.55 68.60 2.03 44.73 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 C 0.03 0.85 4.56 86.32 0.39 1.24 16 23 C 0.10 2.69 3.12 30.63 0.10 2.78 16 24 H 0.06 1.75 6.79 -2.38 -0.02 1.74 16 25 C -0.14 -3.08 9.57 71.98 0.69 -2.39 16 26 O -0.37 -9.84 9.88 -148.98 -1.47 -11.31 16 27 H 0.07 1.21 6.69 -2.39 -0.02 1.20 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.31 7.69 -2.39 -0.02 1.29 16 30 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 2.11 7.65 -2.39 -0.02 2.09 16 33 H 0.08 1.97 6.85 -2.39 -0.02 1.95 16 34 H 0.06 1.36 6.49 -2.39 -0.02 1.35 16 35 H 0.09 2.33 7.78 -2.39 -0.02 2.31 16 36 H 0.11 3.42 8.06 -2.39 -0.02 3.40 16 37 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 38 H 0.40 19.26 7.90 -92.71 -0.73 18.53 16 39 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 40 H 0.08 3.20 5.84 -2.39 -0.01 3.19 16 41 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -65.35 343.50 -0.79 -66.14 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: 0.27 Total: 36.60 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 5.26 Total: 8.80 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -5.14 Total: -101.41 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -3.21 Total: -54.86 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -65.35 -0.79 -66.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565755497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.948 kcal (2) G-P(sol) polarization free energy of solvation -65.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds