Wall clock time and date at job start Tue Mar 31 2020 05:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.96496 * 2 1 4 4 O 1.43431 * 109.86492 * 238.96548 * 2 1 3 5 5 C 1.43721 * 109.94968 * 242.75299 * 4 2 1 6 6 C 1.55063 * 105.18704 * 335.66674 * 5 4 2 7 7 C 1.53669 * 109.86204 * 121.03523 * 2 1 3 8 8 C 1.52256 * 110.76817 * 257.95856 * 7 2 1 9 9 N 1.47170 * 109.32470 * 178.66138 * 8 7 2 10 10 C 1.46896 * 110.99849 * 179.01301 * 9 8 7 11 11 C 1.50702 * 109.47423 * 293.65387 * 10 9 8 12 12 O 1.21292 * 119.99699 * 353.71946 * 11 10 9 13 13 N 1.34782 * 120.00188 * 173.72262 * 11 10 9 14 14 C 1.37089 * 119.99764 * 180.27698 * 13 11 10 15 15 H 1.07997 * 120.00754 * 359.71716 * 14 13 11 16 16 C 1.38960 * 119.99563 * 179.72379 * 14 13 11 17 17 N 1.31402 * 119.99986 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99650 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47302 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47097 * 119.99993 * 18 16 14 21 21 H 1.48502 * 109.46920 * 239.99680 * 18 16 14 22 22 C 1.47014 * 110.65562 * 302.72266 * 9 8 7 23 23 C 1.53095 * 109.40710 * 59.22440 * 22 9 8 24 24 H 1.08998 * 109.57456 * 62.46782 * 23 22 9 25 25 C 1.53008 * 109.52147 * 182.62276 * 23 22 9 26 26 O 1.42069 * 110.94540 * 22.02697 * 7 2 1 27 27 H 1.08998 * 109.47336 * 298.96787 * 1 2 3 28 28 H 1.09003 * 109.46788 * 58.96743 * 1 2 3 29 29 H 1.08999 * 109.47298 * 178.96360 * 1 2 3 30 30 H 1.08997 * 110.29548 * 216.73526 * 5 4 2 31 31 H 1.08999 * 110.30018 * 94.59396 * 5 4 2 32 32 H 1.08997 * 111.13831 * 277.88733 * 6 5 4 33 33 H 1.08999 * 111.13694 * 153.69653 * 6 5 4 34 34 H 1.09001 * 109.49862 * 58.70864 * 8 7 2 35 35 H 1.09001 * 109.49906 * 298.61841 * 8 7 2 36 36 H 1.08998 * 109.47251 * 173.65388 * 10 9 8 37 37 H 1.09001 * 109.47430 * 53.65498 * 10 9 8 38 38 H 0.97001 * 119.99772 * 359.97438 * 13 11 10 39 39 H 0.97004 * 119.99724 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47720 * 179.20620 * 22 9 8 41 41 H 1.09000 * 109.48086 * 299.24516 * 22 9 8 42 42 H 1.08992 * 109.47270 * 179.68515 * 25 23 22 43 43 H 1.09008 * 109.46896 * 299.68597 * 25 23 22 44 44 H 1.09002 * 109.46953 * 59.67892 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9021 1.0244 0.0000 4 8 2.0174 -0.6955 -1.1559 5 6 2.7657 -1.8540 -0.7517 6 6 3.2576 -1.5392 0.6847 7 6 2.0521 -0.7451 1.2384 8 6 2.5148 0.2381 2.3048 9 7 2.9775 -0.5072 3.4865 10 6 3.4553 0.4075 4.5319 11 6 4.6973 1.1136 4.0524 12 8 5.2059 0.7970 2.9978 13 7 5.2430 2.0968 4.7955 14 6 6.3695 2.7430 4.3565 15 1 6.8225 2.4611 3.4175 16 6 6.9288 3.7606 5.1198 17 7 6.3774 4.1038 6.2621 18 14 8.4643 4.6405 4.5220 19 1 8.8853 4.0702 3.2172 20 1 8.1738 6.0878 4.3596 21 1 9.5546 4.4628 5.5144 22 6 1.9120 -1.3815 3.9981 23 6 1.4928 -2.3664 2.9035 24 1 2.3384 -3.0019 2.6407 25 6 0.3394 -3.2343 3.4111 26 8 1.0678 -1.6332 1.7492 27 1 -0.3634 0.4977 0.8991 28 1 -0.3633 0.5298 -0.8806 29 1 -0.3634 -1.0275 -0.0186 30 1 3.6152 -2.0066 -1.4175 31 1 2.1247 -2.7356 -0.7472 32 1 4.1578 -0.9249 0.6661 33 1 3.4203 -2.4544 1.2539 34 1 1.6854 0.8870 2.5859 35 1 3.3330 0.8421 1.9124 36 1 3.6852 -0.1598 5.4338 37 1 2.6816 1.1429 4.7527 38 1 4.8360 2.3502 5.6387 39 1 6.7676 4.8144 6.7948 40 1 2.2792 -1.9339 4.8631 41 1 1.0541 -0.7761 4.2905 42 1 0.0379 -3.9313 2.6294 43 1 0.6637 -3.7919 4.2898 44 1 -0.5049 -2.5978 3.6760 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565755498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:24 Heat of formation + Delta-G solvation = -115.850944 kcal Electronic energy + Delta-G solvation = -25953.371614 eV Core-core repulsion = 22291.998538 eV Total energy + Delta-G solvation = -3661.373076 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.82412 -38.55699 -37.73208 -35.32129 -33.85634 -33.24876 -31.41864 -31.29059 -30.55615 -28.15755 -27.26759 -25.23361 -24.39774 -22.64582 -22.45217 -20.94501 -19.42967 -19.18185 -17.88979 -17.04237 -16.48518 -16.15766 -15.92462 -15.28085 -14.78520 -14.61558 -14.53150 -14.32514 -14.07131 -13.64299 -13.55593 -13.31489 -13.05637 -12.72935 -12.49488 -12.35908 -12.06756 -11.92467 -11.73409 -11.69810 -11.51926 -11.47558 -11.17317 -11.00780 -10.81761 -10.76071 -10.36628 -10.26429 -10.16433 -9.54926 -9.50422 -9.47533 -8.48857 -8.03314 -7.95609 -6.45019 -3.85841 3.14112 3.25171 3.32068 3.50022 3.77998 3.86066 3.89026 4.18177 4.51919 4.76721 4.82376 4.91085 4.99395 5.09197 5.16813 5.22642 5.27979 5.31671 5.37782 5.40533 5.46470 5.52185 5.60948 5.68468 5.70644 5.78478 5.81496 5.85212 5.94762 5.97897 6.06356 6.14096 6.18936 6.22321 6.30982 6.35106 7.01478 7.10149 7.16546 7.31405 7.52373 8.02873 8.57876 9.14830 9.50654 10.01897 10.72735 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.020132 B = 0.004004 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.512256 B = 6992.114712 C = 7769.416171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.094 3.906 3 H 0.092 0.908 4 O -0.379 6.379 5 C 0.053 3.947 6 C -0.165 4.165 7 C 0.098 3.902 8 C 0.038 3.962 9 N -0.509 5.509 10 C 0.046 3.954 11 C 0.443 3.557 12 O -0.577 6.577 13 N -0.564 5.564 14 C -0.299 4.299 15 H 0.104 0.896 16 C 0.023 3.977 17 N -0.901 5.901 18 Si 0.929 3.071 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.281 1.281 22 C 0.022 3.978 23 C 0.088 3.912 24 H 0.069 0.931 25 C -0.142 4.142 26 O -0.362 6.362 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.034 0.966 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.244 -11.252 -5.017 17.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.036 3.964 3 H 0.110 0.890 4 O -0.298 6.298 5 C -0.023 4.023 6 C -0.202 4.202 7 C 0.058 3.942 8 C -0.090 4.090 9 N -0.233 5.233 10 C -0.086 4.086 11 C 0.228 3.772 12 O -0.461 6.461 13 N -0.200 5.200 14 C -0.428 4.428 15 H 0.122 0.878 16 C -0.179 4.179 17 N -0.543 5.543 18 Si 0.756 3.244 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.107 4.107 23 C 0.030 3.970 24 H 0.087 0.913 25 C -0.199 4.199 26 O -0.282 6.282 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.052 0.948 35 H 0.130 0.870 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.656 -11.572 -6.019 17.493 hybrid contribution 0.172 1.142 1.170 1.644 sum -11.484 -10.430 -4.849 16.254 Atomic orbital electron populations 1.21858 0.94167 1.03010 1.01524 1.22599 0.95154 0.95739 0.82948 0.89042 1.88450 1.71541 1.40104 1.29719 1.23395 0.94831 0.88506 0.95589 1.23626 0.99194 1.02099 0.95312 1.22295 0.88202 0.90189 0.93557 1.22646 1.00171 0.95044 0.91123 1.61857 1.34074 1.21479 1.05921 1.21896 0.96853 0.95181 0.94633 1.19694 0.87069 0.83580 0.86876 1.90493 1.64325 1.67108 1.24136 1.41884 1.25769 1.31203 1.21169 1.19744 1.02787 1.13807 1.06469 0.87825 1.25261 0.99557 0.97534 0.95538 1.69617 1.41043 1.30831 1.12783 0.85810 0.80816 0.78877 0.78914 1.19192 1.20745 1.20737 1.22842 0.93540 0.96142 0.98156 1.22207 0.97258 0.92406 0.85133 0.91292 1.21728 0.97797 0.99226 1.01166 1.87836 1.39194 1.56405 1.44736 0.91745 0.92465 0.91459 0.89884 0.92476 0.88290 0.89516 0.94776 0.87008 0.89107 0.93451 0.77522 0.91902 0.89767 0.94232 0.91708 0.90964 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.87 37.16 0.33 -1.49 16 2 C 0.09 1.32 3.76 -26.38 -0.10 1.22 16 3 H 0.09 1.29 7.79 -51.93 -0.40 0.88 16 4 O -0.38 -5.67 11.03 -35.23 -0.39 -6.06 16 5 C 0.05 0.69 7.78 38.25 0.30 0.99 16 6 C -0.16 -2.37 5.95 -24.80 -0.15 -2.52 16 7 C 0.10 1.41 0.69 -89.81 -0.06 1.35 16 8 C 0.04 0.62 3.82 -4.06 -0.02 0.61 16 9 N -0.51 -8.26 4.26 -236.16 -1.01 -9.27 16 10 C 0.05 0.79 5.44 -4.98 -0.03 0.77 16 11 C 0.44 10.13 7.37 -10.98 -0.08 10.05 16 12 O -0.58 -14.93 14.24 5.55 0.08 -14.85 16 13 N -0.56 -13.99 5.29 -10.96 -0.06 -14.04 16 14 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 15 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 16 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 17 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 18 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 C 0.02 0.28 4.91 -3.71 -0.02 0.26 16 23 C 0.09 1.04 3.19 -26.68 -0.09 0.95 16 24 H 0.07 0.84 6.42 -51.93 -0.33 0.51 16 25 C -0.14 -1.26 9.57 37.16 0.36 -0.91 16 26 O -0.36 -4.88 8.32 -35.23 -0.29 -5.17 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.85 7.49 -51.93 -0.39 0.46 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.65 7.92 -51.93 -0.41 1.24 16 33 H 0.09 1.20 6.25 -51.93 -0.32 0.88 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.11 2.17 6.01 -51.93 -0.31 1.86 16 36 H 0.09 1.42 8.03 -51.93 -0.42 1.01 16 37 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 38 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 39 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -30.24 346.36 -7.61 -37.85 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -7.07 Total: 10.59 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 0.21 Total: 3.46 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.34 Total: -46.85 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.60 Total: -26.08 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.24 -7.61 -37.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565755498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.996 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds