Wall clock time and date at job start Tue Mar 31 2020 03:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47053 * 2 1 4 4 C 1.53003 * 109.46877 * 240.00240 * 2 1 3 5 5 C 1.50698 * 109.47330 * 120.00246 * 2 1 3 6 6 O 1.21284 * 119.99644 * 359.97438 * 5 2 1 7 7 N 1.34775 * 119.99974 * 180.02562 * 5 2 1 8 8 C 1.46500 * 119.99808 * 180.02562 * 7 5 2 9 9 C 1.50699 * 109.46889 * 179.97438 * 8 7 5 10 10 O 1.21283 * 120.00343 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00156 * 179.97438 * 9 8 7 12 12 C 1.47029 * 125.64580 * 359.97438 * 11 9 8 13 13 C 1.54321 * 107.26870 * 181.08105 * 12 11 9 14 14 C 1.55159 * 102.94734 * 22.19165 * 13 12 11 15 15 O 1.42897 * 111.00330 * 82.57081 * 14 13 12 16 16 C 1.50694 * 111.00630 * 206.42508 * 14 13 12 17 17 H 1.07998 * 120.00284 * 21.15272 * 16 14 13 18 18 C 1.37876 * 119.99874 * 201.15447 * 16 14 13 19 19 N 1.31518 * 119.99679 * 174.28584 * 18 16 14 20 20 Si 1.86797 * 120.00308 * 354.28622 * 18 16 14 21 21 H 1.48506 * 109.46727 * 85.91372 * 20 18 16 22 22 H 1.48498 * 109.47492 * 205.91605 * 20 18 16 23 23 H 1.48501 * 109.46806 * 325.91904 * 20 18 16 24 24 C 1.47422 * 125.65105 * 179.97438 * 11 9 8 25 25 H 1.09005 * 109.46814 * 299.99933 * 1 2 3 26 26 H 1.08997 * 109.46931 * 59.99828 * 1 2 3 27 27 H 1.08999 * 109.46910 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46847 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47150 * 300.00298 * 3 2 1 30 30 H 1.08995 * 109.47374 * 60.00167 * 3 2 1 31 31 H 1.09002 * 109.46934 * 300.00086 * 4 2 1 32 32 H 1.09001 * 109.47183 * 59.99788 * 4 2 1 33 33 H 1.08996 * 109.46897 * 180.02562 * 4 2 1 34 34 H 0.96996 * 120.00214 * 359.97438 * 7 5 2 35 35 H 1.08999 * 109.47559 * 59.99704 * 8 7 5 36 36 H 1.08995 * 109.46810 * 299.99294 * 8 7 5 37 37 H 1.09001 * 109.87793 * 300.49772 * 12 11 9 38 38 H 1.08996 * 109.88477 * 61.50853 * 12 11 9 39 39 H 1.09004 * 110.72223 * 140.55299 * 13 12 11 40 40 H 1.08999 * 110.72128 * 263.65051 * 13 12 11 41 41 H 0.96695 * 114.00326 * 61.78078 * 15 14 13 42 42 H 0.97009 * 119.99778 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.36805 * 274.68711 * 24 11 9 44 44 H 1.08995 * 110.36824 * 37.01585 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0325 -0.7104 1.2304 6 8 1.2443 -1.1710 2.0289 7 7 3.3575 -0.8331 1.4439 8 6 3.8459 -1.5243 2.6397 9 6 5.3529 -1.5241 2.6397 10 8 5.9593 -0.9989 1.7302 11 7 6.0268 -2.1077 3.6505 12 6 5.4206 -2.7770 4.8108 13 6 6.5740 -3.2655 5.7121 14 6 7.7541 -2.3490 5.2939 15 8 7.6890 -1.0906 5.9679 16 6 9.0777 -3.0249 5.5431 17 1 9.1272 -4.1004 5.6288 18 6 10.2255 -2.2704 5.6619 19 7 11.3607 -2.8475 5.9904 20 14 10.1683 -0.4285 5.3561 21 1 9.7741 0.2688 6.6067 22 1 11.5093 0.0441 4.9275 23 1 9.1760 -0.1341 4.2913 24 6 7.4939 -2.1806 3.7759 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1300 -0.7216 -1.2491 34 1 3.9878 -0.4645 0.8054 35 1 3.4830 -2.5521 2.6391 36 1 3.4822 -1.0111 3.5299 37 1 4.7941 -2.0734 5.3590 38 1 4.8220 -3.6252 4.4785 39 1 6.3285 -3.1220 6.7644 40 1 6.8045 -4.3116 5.5106 41 1 7.7537 -1.1561 6.9304 42 1 12.1683 -2.3166 6.0743 43 1 7.8793 -3.0399 3.2271 44 1 7.9519 -1.2607 3.4124 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592838132.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:25 Heat of formation + Delta-G solvation = -129.081441 kcal Electronic energy + Delta-G solvation = -25005.984504 eV Core-core repulsion = 21344.037711 eV Total energy + Delta-G solvation = -3661.946793 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.50314 -39.59845 -37.76962 -35.84779 -34.88771 -34.49535 -32.44682 -30.64947 -28.95787 -27.98880 -27.65306 -27.18052 -24.92954 -23.08516 -22.40996 -20.01982 -19.87785 -18.96957 -17.62744 -17.25788 -16.52692 -16.13394 -16.04316 -15.36259 -15.17917 -14.94824 -14.56970 -14.23900 -14.06796 -13.87738 -13.62468 -13.32359 -12.75166 -12.66401 -12.60955 -12.44360 -12.38655 -12.19861 -12.04405 -11.99055 -11.85409 -11.61472 -11.25043 -11.21524 -10.94433 -10.65764 -10.39210 -10.27321 -9.87739 -9.77132 -9.29487 -9.26072 -8.67355 -8.62542 -8.26822 -6.27748 -4.41457 2.48723 2.74005 2.79446 3.40264 3.43392 3.50954 3.65177 4.35685 4.42048 4.46670 4.55582 4.57508 4.93717 4.98295 5.03572 5.15268 5.23181 5.27129 5.28484 5.32344 5.42944 5.48382 5.51911 5.57839 5.63583 5.65255 5.80310 5.91194 5.91447 6.01175 6.04160 6.19220 6.42862 6.47759 6.52519 6.63322 6.91140 7.35908 7.37639 7.79553 8.04581 8.07383 8.27928 8.56918 8.74426 9.33384 10.80833 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.029827 B = 0.003323 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.523530 B = 8424.797593 C = 8813.169358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.142 4.142 5 C 0.524 3.476 6 O -0.543 6.543 7 N -0.715 5.715 8 C 0.104 3.896 9 C 0.517 3.483 10 O -0.550 6.550 11 N -0.605 5.605 12 C 0.099 3.901 13 C -0.147 4.147 14 C 0.218 3.782 15 O -0.562 6.562 16 C -0.554 4.554 17 H 0.083 0.917 18 C 0.077 3.923 19 N -0.884 5.884 20 Si 0.940 3.060 21 H -0.289 1.289 22 H -0.322 1.322 23 H -0.267 1.267 24 C 0.112 3.888 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.412 0.588 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.373 0.627 42 H 0.268 0.732 43 H 0.082 0.918 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.310 4.210 -8.995 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.088 4.088 3 C -0.200 4.200 4 C -0.200 4.200 5 C 0.310 3.690 6 O -0.420 6.420 7 N -0.370 5.370 8 C -0.023 4.023 9 C 0.304 3.696 10 O -0.429 6.429 11 N -0.337 5.337 12 C -0.024 4.024 13 C -0.185 4.185 14 C 0.178 3.822 15 O -0.370 6.370 16 C -0.591 4.591 17 H 0.101 0.899 18 C -0.129 4.129 19 N -0.518 5.518 20 Si 0.775 3.225 21 H -0.216 1.216 22 H -0.252 1.252 23 H -0.193 1.193 24 C -0.010 4.010 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.250 0.750 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.221 0.779 42 H 0.078 0.922 43 H 0.100 0.900 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.443 4.384 -9.516 21.211 hybrid contribution 0.514 0.726 0.308 0.942 sum -17.929 5.110 -9.207 20.792 Atomic orbital electron populations 1.21659 0.91832 1.02852 1.02048 1.20803 0.98032 0.96512 0.93447 1.21893 1.01628 0.93594 1.02919 1.21891 1.01609 1.00574 0.95923 1.20596 0.81634 0.79378 0.87413 1.90689 1.55370 1.48829 1.47111 1.45772 1.07584 1.58507 1.25116 1.21047 0.91665 0.99617 0.89993 1.20022 0.89079 0.78629 0.81820 1.90666 1.69901 1.46375 1.36004 1.48635 1.09261 1.54364 1.21450 1.22129 0.97003 0.96125 0.87159 1.23246 0.95171 1.01463 0.98639 1.20218 0.93650 0.80581 0.87770 1.86155 1.94701 1.32759 1.23347 1.21154 0.89491 0.95598 1.52895 0.89914 1.25143 0.94929 1.00379 0.92486 1.69955 0.99998 1.37308 1.44579 0.85867 0.74086 0.83187 0.79377 1.21626 1.25235 1.19332 1.23048 0.76935 1.02717 0.98253 0.91911 0.91989 0.91911 0.91812 0.91231 0.91968 0.91985 0.91230 0.91819 0.75016 0.88629 0.88592 0.91717 0.91925 0.90524 0.90062 0.77926 0.92247 0.89978 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 7.76 37.16 0.29 -0.81 16 2 C -0.08 -0.78 0.87 -155.66 -0.14 -0.92 16 3 C -0.14 -1.14 8.37 37.16 0.31 -0.83 16 4 C -0.14 -1.11 8.37 37.16 0.31 -0.80 16 5 C 0.52 6.58 6.48 -10.99 -0.07 6.51 16 6 O -0.54 -8.48 15.98 5.55 0.09 -8.40 16 7 N -0.71 -9.06 5.31 -61.47 -0.33 -9.39 16 8 C 0.10 1.40 5.35 -5.19 -0.03 1.38 16 9 C 0.52 8.77 7.92 -10.99 -0.09 8.69 16 10 O -0.55 -10.88 15.92 5.55 0.09 -10.79 16 11 N -0.60 -10.65 3.33 -170.51 -0.57 -11.22 16 12 C 0.10 1.44 6.49 -3.06 -0.02 1.42 16 13 C -0.15 -2.43 6.14 -24.90 -0.15 -2.58 16 14 C 0.22 4.58 0.69 -89.61 -0.06 4.52 16 15 O -0.56 -11.71 8.88 -35.23 -0.31 -12.02 16 16 C -0.55 -14.06 8.87 -34.44 -0.31 -14.36 16 17 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 18 C 0.08 2.07 5.46 -17.82 -0.10 1.98 16 19 N -0.88 -25.57 13.96 55.43 0.77 -24.79 16 20 Si 0.94 23.08 24.85 -169.99 -4.22 18.85 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.32 -8.12 7.11 56.52 0.40 -7.72 16 23 H -0.27 -6.68 5.23 56.52 0.30 -6.39 16 24 C 0.11 2.34 5.79 -2.52 -0.01 2.33 16 25 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 28 H 0.06 0.52 7.56 -51.93 -0.39 0.13 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.50 7.56 -51.93 -0.39 0.11 16 34 H 0.41 5.08 6.27 -40.82 -0.26 4.83 16 35 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.08 1.34 7.98 -51.93 -0.41 0.93 16 41 H 0.37 6.69 9.02 45.56 0.41 7.10 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.08 1.73 8.03 -51.93 -0.42 1.31 16 44 H 0.08 1.90 6.10 -51.93 -0.32 1.58 16 LS Contribution 352.67 15.07 5.31 5.31 Total: -1.00 -32.36 352.67 -5.74 -38.10 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.51 Total: 7.82 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -0.06 Total: 6.52 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.12 Total: -45.40 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.14 Total: -31.21 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.22 Total: 18.85 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.36 -5.74 -38.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838132.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.985 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds