Wall clock time and date at job start Tue Mar 31 2020 03:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46734 * 2 1 4 4 C 1.52994 * 109.47290 * 119.99793 * 2 1 3 5 5 C 1.52995 * 109.47168 * 67.42280 * 4 2 1 6 6 H 1.09003 * 109.47445 * 306.42999 * 5 4 2 7 7 C 1.50696 * 109.47552 * 186.42603 * 5 4 2 8 8 N 1.34777 * 120.00145 * 76.16216 * 7 5 4 9 9 O 1.21284 * 120.00229 * 256.17050 * 7 5 4 10 10 C 1.50707 * 109.47325 * 66.42764 * 5 4 2 11 11 O 1.21284 * 119.99402 * 359.97438 * 10 5 4 12 12 N 1.34772 * 120.00339 * 179.72588 * 10 5 4 13 13 C 1.47029 * 125.64653 * 0.29794 * 12 10 5 14 14 C 1.54323 * 107.26816 * 181.02259 * 13 12 10 15 15 C 1.55161 * 102.94198 * 22.19401 * 14 13 12 16 16 O 1.42900 * 111.00357 * 82.57496 * 15 14 13 17 17 C 1.50707 * 111.00209 * 206.38218 * 15 14 13 18 18 H 1.08002 * 119.99902 * 24.88524 * 17 15 14 19 19 C 1.37875 * 119.99907 * 204.87945 * 17 15 14 20 20 N 1.31518 * 119.99802 * 171.67743 * 19 17 15 21 21 Si 1.86798 * 120.00185 * 351.67798 * 19 17 15 22 22 H 1.48503 * 109.47034 * 86.70165 * 21 19 17 23 23 H 1.48494 * 109.47065 * 206.70435 * 21 19 17 24 24 H 1.48503 * 109.46906 * 326.70578 * 21 19 17 25 25 C 1.47425 * 125.64908 * 179.97438 * 12 10 5 26 26 H 1.09004 * 109.46961 * 303.33199 * 1 2 3 27 27 H 1.08993 * 109.47645 * 63.33851 * 1 2 3 28 28 H 1.09004 * 109.46423 * 183.33860 * 1 2 3 29 29 H 1.08998 * 109.46783 * 240.00275 * 2 1 3 30 30 H 1.09003 * 109.47176 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47363 * 300.00169 * 3 2 1 32 32 H 1.09000 * 109.47550 * 60.00112 * 3 2 1 33 33 H 1.08997 * 109.47557 * 307.42212 * 4 2 1 34 34 H 1.09000 * 109.47360 * 187.42072 * 4 2 1 35 35 H 0.96999 * 119.99562 * 5.03506 * 8 7 5 36 36 H 0.96999 * 120.00192 * 185.03235 * 8 7 5 37 37 H 1.08997 * 109.88041 * 300.44300 * 13 12 10 38 38 H 1.09003 * 109.88064 * 61.60654 * 13 12 10 39 39 H 1.08995 * 110.71994 * 140.55902 * 14 13 12 40 40 H 1.09001 * 110.71929 * 263.65585 * 14 13 12 41 41 H 0.96701 * 114.00037 * 56.16046 * 16 15 14 42 42 H 0.96994 * 119.99713 * 179.97438 * 20 19 17 43 43 H 1.08999 * 110.36605 * 274.74649 * 25 12 10 44 44 H 1.09000 * 110.36835 * 37.06766 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6879 -2.2073 1.1596 6 1 0.6191 -2.3172 0.9763 7 6 2.0480 -2.8880 2.4550 8 7 1.2651 -2.7283 3.5404 9 8 3.0423 -3.5793 2.5209 10 6 2.4589 -2.8390 0.0292 11 8 3.2151 -2.1665 -0.6393 12 7 2.3118 -4.1523 -0.2358 13 6 1.4326 -5.0798 0.4911 14 6 1.6122 -6.4745 -0.1447 15 6 3.0029 -6.3698 -0.8248 16 8 4.0523 -6.6046 0.1163 17 6 3.1060 -7.3175 -1.9920 18 1 2.2124 -7.6433 -2.5037 19 6 4.3412 -7.7686 -2.4067 20 7 4.4242 -8.7174 -3.3136 21 14 5.8966 -7.0323 -1.6803 22 1 6.2502 -7.7548 -0.4320 23 1 7.0075 -7.1593 -2.6575 24 1 5.6685 -5.5972 -1.3739 25 6 3.0008 -4.8952 -1.3067 26 1 -0.3633 0.5647 0.8587 27 1 -0.3634 0.4611 -0.9183 28 1 -0.3632 -1.0260 0.0599 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.5724 -0.2898 2.1342 34 1 3.1219 -0.6077 1.3181 35 1 0.4323 -2.2361 3.4695 36 1 1.5345 -3.1057 4.3924 37 1 1.7167 -5.1124 1.5429 38 1 0.3951 -4.7594 0.3949 39 1 1.6149 -7.2500 0.6212 40 1 0.8326 -6.6654 -0.8822 41 1 3.9859 -7.4528 0.5760 42 1 5.2931 -9.0345 -3.6056 43 1 2.4549 -4.8010 -2.2454 44 1 4.0223 -4.5331 -1.4230 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:17 Heat of formation + Delta-G solvation = -132.233373 kcal Electronic energy + Delta-G solvation = -26197.579838 eV Core-core repulsion = 22535.496367 eV Total energy + Delta-G solvation = -3662.083471 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66364 -38.75357 -37.78850 -36.20793 -34.62100 -33.80174 -32.32608 -31.46703 -30.02998 -28.44580 -27.29189 -25.74024 -24.33871 -22.82314 -21.17235 -20.27739 -19.74721 -18.76201 -17.76094 -17.43493 -17.16197 -16.45488 -15.39653 -15.31114 -15.06509 -14.89591 -14.66181 -14.29830 -13.99391 -13.73919 -13.65989 -13.04482 -12.73476 -12.56565 -12.38595 -12.36823 -12.17262 -11.92325 -11.71443 -11.65871 -11.45362 -11.07052 -10.84683 -10.75015 -10.65236 -10.50369 -10.23317 -10.16676 -9.93367 -9.80892 -9.43061 -9.18521 -8.56002 -8.43445 -8.00699 -6.17169 -4.29192 2.48417 2.78078 3.42123 3.53568 3.55013 3.61562 3.81582 4.48462 4.56881 4.64140 4.69488 4.90915 4.95450 5.01501 5.10710 5.20293 5.24715 5.29192 5.50964 5.51498 5.59003 5.66107 5.72912 5.77427 5.83902 5.86404 6.07867 6.12592 6.18219 6.24680 6.43496 6.55136 6.58952 6.61980 6.70077 6.79215 7.04871 7.10115 7.50993 8.05580 8.11592 8.17450 8.56099 8.69120 8.86206 9.46171 10.91237 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.020475 B = 0.004865 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.224951 B = 5754.162087 C = 6166.014420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.142 4.142 4 C -0.086 4.086 5 C -0.131 4.131 6 H 0.115 0.885 7 C 0.523 3.477 8 N -0.856 5.856 9 O -0.512 6.512 10 C 0.545 3.455 11 O -0.539 6.539 12 N -0.598 5.598 13 C 0.097 3.903 14 C -0.147 4.147 15 C 0.221 3.779 16 O -0.553 6.553 17 C -0.553 4.553 18 H 0.082 0.918 19 C 0.078 3.922 20 N -0.887 5.887 21 Si 0.943 3.057 22 H -0.291 1.291 23 H -0.325 1.325 24 H -0.268 1.268 25 C 0.114 3.886 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.400 0.600 36 H 0.402 0.598 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.369 0.631 42 H 0.267 0.733 43 H 0.079 0.921 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.987 14.998 12.888 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 C -0.199 4.199 4 C -0.124 4.124 5 C -0.156 4.156 6 H 0.133 0.867 7 C 0.306 3.694 8 N -0.421 5.421 9 O -0.385 6.385 10 C 0.331 3.669 11 O -0.417 6.417 12 N -0.330 5.330 13 C -0.026 4.026 14 C -0.185 4.185 15 C 0.180 3.820 16 O -0.361 6.361 17 C -0.590 4.590 18 H 0.100 0.900 19 C -0.128 4.128 20 N -0.521 5.521 21 Si 0.778 3.222 22 H -0.218 1.218 23 H -0.256 1.256 24 H -0.194 1.194 25 C -0.008 4.008 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.228 0.772 36 H 0.233 0.767 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.217 0.783 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.601 15.473 12.061 22.299 hybrid contribution 0.096 -0.279 0.925 0.971 sum -10.505 15.194 12.986 22.580 Atomic orbital electron populations 1.21936 0.95704 1.01367 1.01699 1.21256 0.95098 0.96504 0.99444 1.21763 1.01348 0.95586 1.01191 1.21379 1.02883 0.89556 0.98573 1.21672 1.02995 0.98184 0.92710 0.86714 1.20196 0.83432 0.80549 0.85178 1.43824 1.25942 1.60176 1.12181 1.90901 1.26210 1.37192 1.84230 1.19238 0.82392 0.81022 0.84227 1.90652 1.38100 1.61362 1.51630 1.48505 1.43596 1.07135 1.33724 1.22138 0.92392 0.91108 0.96956 1.23246 1.01302 0.93804 1.00156 1.20232 0.82477 0.91667 0.87623 1.86172 1.50203 1.42216 1.57477 1.21154 0.95226 1.27536 1.15127 0.90041 1.25113 1.00308 0.93355 0.93985 1.69969 1.25700 1.26118 1.30336 0.85771 0.79484 0.80932 0.75964 1.21805 1.25586 1.19368 1.22988 0.97751 0.91161 0.88862 0.92860 0.92580 0.92912 0.88806 0.92487 0.92759 0.93172 0.91267 0.90338 0.77195 0.76652 0.91509 0.92940 0.90858 0.90277 0.78313 0.92390 0.90287 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.06 37.16 0.34 -0.95 16 2 C -0.10 -1.16 2.70 -90.62 -0.24 -1.41 16 3 C -0.14 -1.38 9.19 37.16 0.34 -1.04 16 4 C -0.09 -0.98 3.76 -26.74 -0.10 -1.08 16 5 C -0.13 -1.69 1.98 -92.92 -0.18 -1.88 16 6 H 0.12 1.13 6.33 -51.93 -0.33 0.80 16 7 C 0.52 6.91 5.70 -10.99 -0.06 6.85 16 8 N -0.86 -6.57 8.87 31.22 0.28 -6.29 16 9 O -0.51 -9.59 15.51 5.55 0.09 -9.50 16 10 C 0.54 10.17 6.27 -10.98 -0.07 10.10 16 11 O -0.54 -11.68 14.35 5.55 0.08 -11.60 16 12 N -0.60 -11.74 3.17 -170.37 -0.54 -12.28 16 13 C 0.10 1.62 5.98 -3.06 -0.02 1.60 16 14 C -0.15 -2.70 6.11 -24.89 -0.15 -2.85 16 15 C 0.22 5.06 0.70 -89.49 -0.06 5.00 16 16 O -0.55 -13.01 8.68 -35.23 -0.31 -13.31 16 17 C -0.55 -14.86 8.88 -34.44 -0.31 -15.17 16 18 H 0.08 2.33 8.00 -52.49 -0.42 1.91 16 19 C 0.08 2.22 5.46 -17.82 -0.10 2.12 16 20 N -0.89 -26.62 13.96 55.43 0.77 -25.84 16 21 Si 0.94 24.84 24.90 -169.99 -4.23 20.61 16 22 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 23 H -0.32 -8.68 7.11 56.52 0.40 -8.27 16 24 H -0.27 -7.33 5.44 56.52 0.31 -7.02 16 25 C 0.11 2.61 5.88 -2.41 -0.01 2.60 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.44 6.39 -51.93 -0.33 0.10 16 29 H 0.09 1.37 5.99 -51.93 -0.31 1.06 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 34 H 0.08 1.09 7.90 -51.93 -0.41 0.68 16 35 H 0.40 1.69 8.83 -40.82 -0.36 1.33 16 36 H 0.40 2.72 8.93 -40.82 -0.36 2.35 16 37 H 0.07 1.12 5.77 -51.93 -0.30 0.82 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 40 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 41 H 0.37 7.51 9.03 45.56 0.41 7.92 16 42 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.08 1.77 8.04 -51.93 -0.42 1.35 16 44 H 0.08 2.02 6.38 -51.93 -0.33 1.68 16 LS Contribution 343.75 15.07 5.18 5.18 Total: -1.00 -36.30 343.75 -5.50 -41.80 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.19 Total: 7.35 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -0.63 Total: 3.89 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.51 Total: -44.42 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.14 Total: -34.41 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -4.23 Total: 20.61 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.30 -5.50 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.430 kcal (2) G-P(sol) polarization free energy of solvation -36.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds