Wall clock time and date at job start Tue Mar 31 2020 03:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47169 * 2 1 4 4 C 1.53000 * 109.47388 * 120.00292 * 2 1 3 5 5 C 1.53001 * 109.46934 * 62.62028 * 4 2 1 6 6 H 1.08992 * 109.47070 * 306.45907 * 5 4 2 7 7 C 1.50703 * 109.46593 * 186.45914 * 5 4 2 8 8 N 1.34781 * 119.99753 * 83.37909 * 7 5 4 9 9 O 1.21278 * 120.00137 * 263.37275 * 7 5 4 10 10 C 1.50697 * 109.47049 * 66.46098 * 5 4 2 11 11 O 1.21276 * 120.00454 * 0.02562 * 10 5 4 12 12 N 1.34783 * 119.99676 * 179.97438 * 10 5 4 13 13 C 1.47290 * 125.79311 * 359.97438 * 12 10 5 14 14 C 1.54321 * 107.30232 * 178.92494 * 13 12 10 15 15 C 1.55157 * 102.94628 * 337.82214 * 14 13 12 16 16 O 1.42900 * 110.99938 * 277.42662 * 15 14 13 17 17 C 1.50695 * 111.03770 * 153.59207 * 15 14 13 18 18 H 1.08007 * 119.99827 * 247.78306 * 17 15 14 19 19 C 1.37877 * 120.00393 * 67.78261 * 17 15 14 20 20 N 1.31512 * 119.99928 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00204 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47253 * 60.00063 * 21 19 17 23 23 H 1.48498 * 109.47433 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47031 * 300.00205 * 21 19 17 25 25 C 1.47421 * 125.64571 * 180.02562 * 12 10 5 26 26 H 1.08996 * 109.47310 * 62.11879 * 1 2 3 27 27 H 1.09003 * 109.47115 * 182.12249 * 1 2 3 28 28 H 1.09003 * 109.46698 * 302.12238 * 1 2 3 29 29 H 1.09005 * 109.46888 * 240.00397 * 2 1 3 30 30 H 1.09002 * 109.47309 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47392 * 300.00291 * 3 2 1 32 32 H 1.09002 * 109.47388 * 60.00303 * 3 2 1 33 33 H 1.08998 * 109.46847 * 302.61859 * 4 2 1 34 34 H 1.09002 * 109.46863 * 182.61948 * 4 2 1 35 35 H 0.96996 * 120.00468 * 5.00692 * 8 7 5 36 36 H 0.97005 * 119.99704 * 185.00921 * 8 7 5 37 37 H 1.09000 * 109.85157 * 59.50550 * 13 12 10 38 38 H 1.08995 * 110.00410 * 298.43311 * 13 12 10 39 39 H 1.08997 * 110.71884 * 219.45489 * 14 13 12 40 40 H 1.09004 * 110.71451 * 96.18645 * 14 13 12 41 41 H 0.96701 * 114.00511 * 292.18987 * 16 15 14 42 42 H 0.96997 * 120.00467 * 179.97438 * 20 19 17 43 43 H 1.09000 * 110.37258 * 85.25852 * 25 12 10 44 44 H 1.09005 * 110.36438 * 323.04097 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5846 -2.1816 1.2165 6 1 0.5044 -2.2222 1.0773 7 6 1.9491 -2.8505 2.5169 8 7 1.1417 -2.7250 3.5887 9 8 2.9689 -3.5019 2.5988 10 6 2.2652 -2.8947 0.0767 11 8 3.0388 -2.2943 -0.6388 12 7 2.0150 -4.2001 -0.1469 13 6 1.1045 -5.0497 0.6395 14 6 1.1194 -6.4538 -0.0007 15 6 1.6001 -6.1707 -1.4485 16 8 0.5142 -5.7468 -2.2750 17 6 2.2840 -7.3776 -2.0371 18 1 3.3443 -7.3514 -2.2414 19 6 1.5564 -8.5153 -2.3149 20 7 0.2653 -8.5471 -2.0666 21 14 2.4040 -10.0111 -3.0452 22 1 3.4646 -10.4811 -2.1180 23 1 1.4086 -11.0940 -3.2490 24 1 3.0129 -9.6472 -4.3499 25 6 2.6091 -5.0170 -1.2207 26 1 -0.3634 0.4806 -0.9083 27 1 -0.3633 -1.0270 0.0381 28 1 -0.3633 0.5465 0.8704 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6389 -0.2353 2.1385 34 1 3.1291 -0.6808 1.2729 35 1 0.2914 -2.2660 3.5044 36 1 1.4110 -3.0937 4.4446 37 1 0.0954 -4.6388 0.6083 38 1 1.4486 -5.1093 1.6719 39 1 0.1190 -6.8866 -0.0042 40 1 1.8214 -7.1066 0.5181 41 1 -0.1428 -6.4356 -2.4452 42 1 -0.2467 -9.3473 -2.2623 43 1 3.5744 -5.4134 -0.9060 44 1 2.7206 -4.4258 -2.1296 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592854544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:21 Heat of formation + Delta-G solvation = -165.866232 kcal Electronic energy + Delta-G solvation = -25971.075673 eV Core-core repulsion = 22307.533772 eV Total energy + Delta-G solvation = -3663.541901 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.88255 -40.05325 -39.10109 -37.23152 -36.07151 -34.72687 -34.15381 -32.55780 -31.26807 -30.04703 -27.99188 -27.33919 -25.72496 -24.14973 -22.36602 -21.53167 -21.07349 -20.03761 -19.23499 -18.75894 -18.27106 -17.53849 -17.00388 -16.75910 -16.26671 -16.19865 -15.96725 -15.52948 -15.35264 -14.98135 -14.72216 -14.46742 -13.96242 -13.78675 -13.72576 -13.45671 -13.23433 -13.17490 -13.03040 -12.92411 -12.66318 -12.58752 -12.48756 -12.28608 -11.92512 -11.91104 -11.61809 -11.54421 -11.32962 -11.04050 -10.78784 -10.70473 -10.64040 -10.18285 -9.58600 -8.27225 -6.41622 1.42711 1.43998 1.44724 1.47748 1.51515 1.99336 2.39081 2.56649 2.97158 3.32408 3.69760 3.77156 3.83987 3.94641 4.07887 4.11318 4.19221 4.27808 4.30614 4.46734 4.54285 4.59907 4.73367 4.83098 4.83620 4.87727 4.96534 5.07101 5.11305 5.13794 5.22579 5.37307 5.40756 5.45480 5.50412 5.59699 5.74323 5.86092 6.02988 6.36292 6.57837 6.62631 7.09108 7.27437 7.29477 7.44021 8.79323 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.022568 B = 0.004215 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.385996 B = 6641.408410 C = 7102.645015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.138 4.138 4 C -0.079 4.079 5 C -0.122 4.122 6 H 0.148 0.852 7 C 0.530 3.470 8 N -0.822 5.822 9 O -0.580 6.580 10 C 0.535 3.465 11 O -0.576 6.576 12 N -0.604 5.604 13 C 0.108 3.892 14 C -0.128 4.128 15 C 0.241 3.759 16 O -0.591 6.591 17 C -0.567 4.567 18 H 0.053 0.947 19 C 0.039 3.961 20 N -0.908 5.908 21 Si 0.961 3.039 22 H -0.273 1.273 23 H -0.275 1.275 24 H -0.277 1.277 25 C 0.125 3.875 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.050 0.950 35 H 0.422 0.578 36 H 0.413 0.587 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.382 0.618 42 H 0.274 0.726 43 H 0.060 0.940 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.173 14.277 12.294 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.195 4.195 4 C -0.117 4.117 5 C -0.146 4.146 6 H 0.165 0.835 7 C 0.314 3.686 8 N -0.388 5.388 9 O -0.459 6.459 10 C 0.324 3.676 11 O -0.457 6.457 12 N -0.335 5.335 13 C -0.014 4.014 14 C -0.166 4.166 15 C 0.201 3.799 16 O -0.402 6.402 17 C -0.605 4.605 18 H 0.072 0.928 19 C -0.163 4.163 20 N -0.547 5.547 21 Si 0.787 3.213 22 H -0.198 1.198 23 H -0.200 1.200 24 H -0.203 1.203 25 C 0.002 3.998 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.130 0.870 34 H 0.069 0.931 35 H 0.254 0.746 36 H 0.246 0.754 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.234 0.766 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.935 14.749 11.834 19.543 hybrid contribution 0.150 -1.699 -0.488 1.774 sum -4.785 13.050 11.346 17.943 Atomic orbital electron populations 1.21925 0.93644 1.01814 1.03080 1.21208 0.96958 0.96855 0.97533 1.21741 1.00395 0.94732 1.02670 1.21398 1.00966 0.88935 1.00448 1.21693 1.04586 0.98029 0.90322 0.83460 1.20114 0.83288 0.79290 0.85953 1.43538 1.23264 1.60479 1.11482 1.90819 1.28160 1.41899 1.84999 1.20231 0.81615 0.80139 0.85627 1.90610 1.38169 1.65989 1.50922 1.48596 1.44488 1.09057 1.31361 1.22208 0.93184 0.91461 0.94597 1.22963 1.02106 0.93828 0.97749 1.19658 0.83946 0.89081 0.87258 1.86075 1.38048 1.43593 1.72447 1.21681 0.95693 0.98696 1.44420 0.92836 1.25589 0.95625 1.00731 0.94308 1.69595 1.06788 1.30582 1.47768 0.85566 0.78432 0.78571 0.78779 1.19835 1.20009 1.20281 1.22116 0.96267 0.91995 0.89452 0.92747 0.93151 0.89748 0.93221 0.93921 0.92423 0.90561 0.86995 0.93121 0.74561 0.75393 0.90101 0.91299 0.90371 0.92509 0.76618 0.91634 0.92145 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.96 71.98 0.65 -1.89 16 2 C -0.11 -2.44 2.73 -10.79 -0.03 -2.47 16 3 C -0.14 -2.58 9.19 71.98 0.66 -1.92 16 4 C -0.08 -1.77 3.80 30.59 0.12 -1.65 16 5 C -0.12 -3.17 1.93 -12.29 -0.02 -3.20 16 6 H 0.15 2.86 6.15 -2.39 -0.01 2.84 16 7 C 0.53 13.44 5.42 87.66 0.47 13.92 16 8 N -0.82 -10.64 8.87 -173.53 -1.54 -12.18 16 9 O -0.58 -21.28 16.22 -3.02 -0.05 -21.33 16 10 C 0.53 20.99 6.31 87.66 0.55 21.55 16 11 O -0.58 -26.36 14.32 -3.02 -0.04 -26.40 16 12 N -0.60 -25.42 3.27 -811.05 -2.65 -28.08 16 13 C 0.11 4.00 5.99 86.68 0.52 4.51 16 14 C -0.13 -5.67 5.64 31.78 0.18 -5.49 16 15 C 0.24 12.15 0.89 -10.14 -0.01 12.14 16 16 O -0.59 -30.92 13.18 -148.98 -1.96 -32.89 16 17 C -0.57 -30.76 8.25 25.60 0.21 -30.55 16 18 H 0.05 2.94 7.77 -2.91 -0.02 2.92 16 19 C 0.04 2.01 5.30 84.66 0.45 2.45 16 20 N -0.91 -46.61 10.79 21.45 0.23 -46.38 16 21 Si 0.96 41.78 29.54 68.60 2.03 43.81 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 25 C 0.12 6.10 6.07 86.87 0.53 6.63 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 0.90 6.26 -2.39 -0.01 0.88 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 1.60 6.04 -2.38 -0.01 1.59 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.43 7.90 -2.39 -0.02 1.41 16 35 H 0.42 2.16 8.83 -92.71 -0.82 1.34 16 36 H 0.41 4.47 8.93 -92.70 -0.83 3.64 16 37 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.07 2.40 6.21 -2.39 -0.01 2.38 16 39 H 0.08 3.51 7.85 -2.39 -0.02 3.49 16 40 H 0.06 2.61 8.03 -2.39 -0.02 2.59 16 41 H 0.38 20.01 6.93 -74.06 -0.51 19.49 16 42 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 43 H 0.06 3.01 8.02 -2.39 -0.02 3.00 16 44 H 0.05 2.60 8.04 -2.38 -0.02 2.58 16 Total: -1.00 -72.29 350.25 -0.84 -73.13 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: -1.12 Total: 36.30 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 4.27 Total: 14.02 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -3.96 Total: -86.64 kcal Atomic # 8 Polarization: -78.56 SS G_CDS: -2.06 Total: -80.61 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -72.29 -0.84 -73.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.739 kcal (2) G-P(sol) polarization free energy of solvation -72.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds