Wall clock time and date at job start Tue Mar 31 2020 03:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47281 * 2 1 4 4 H 1.09009 * 109.46732 * 55.36012 * 3 2 1 5 5 C 1.50702 * 109.47427 * 175.35891 * 3 2 1 6 6 H 1.07994 * 120.00087 * 120.00162 * 5 3 2 7 7 C 1.37884 * 119.99851 * 300.00326 * 5 3 2 8 8 N 1.31507 * 119.99751 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99876 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47235 * 89.99912 * 9 7 5 11 11 H 1.48499 * 109.47041 * 209.99822 * 9 7 5 12 12 H 1.48501 * 109.47451 * 330.00101 * 9 7 5 13 13 N 1.46898 * 109.47447 * 295.36400 * 3 2 1 14 14 C 1.46902 * 111.00172 * 150.95992 * 13 3 2 15 15 H 1.08997 * 110.43467 * 325.54207 * 14 13 3 16 16 C 1.54625 * 110.48333 * 202.85642 * 14 13 3 17 17 C 1.54485 * 101.76292 * 266.11754 * 16 14 13 18 18 N 1.46759 * 105.47670 * 334.58792 * 17 16 14 19 19 C 1.46503 * 124.34892 * 196.99642 * 18 17 16 20 20 C 1.53009 * 109.46906 * 269.99620 * 19 18 17 21 21 C 1.50696 * 109.46798 * 180.02562 * 20 19 18 22 22 O 1.20825 * 120.00425 * 359.97438 * 21 20 19 23 23 O 1.34226 * 119.99802 * 180.02562 * 21 20 19 24 24 C 1.45192 * 117.00301 * 179.97438 * 23 21 20 25 25 C 1.34413 * 111.29818 * 17.01392 * 18 17 16 26 26 O 1.21283 * 124.94185 * 179.63163 * 25 18 17 27 27 H 1.09005 * 109.47154 * 177.29205 * 1 2 3 28 28 H 1.08996 * 109.46850 * 297.28879 * 1 2 3 29 29 H 1.08995 * 109.47262 * 57.29367 * 1 2 3 30 30 H 1.09005 * 109.47092 * 240.00126 * 2 1 3 31 31 H 1.08998 * 109.47433 * 120.00935 * 2 1 3 32 32 H 0.96998 * 119.99973 * 179.97438 * 8 7 5 33 33 H 1.00898 * 111.00038 * 27.00004 * 13 3 2 34 34 H 1.08997 * 110.97500 * 24.23941 * 16 14 13 35 35 H 1.08995 * 110.96990 * 148.00752 * 16 14 13 36 36 H 1.09005 * 110.24516 * 215.58800 * 17 16 14 37 37 H 1.09000 * 110.31637 * 93.63078 * 17 16 14 38 38 H 1.08996 * 109.47304 * 29.99544 * 19 18 17 39 39 H 1.08998 * 109.46774 * 150.00079 * 19 18 17 40 40 H 1.09003 * 109.46684 * 300.00006 * 20 19 18 41 41 H 1.08998 * 109.46533 * 60.00028 * 20 19 18 42 42 H 1.09005 * 109.47664 * 179.97438 * 24 23 21 43 43 H 1.09006 * 109.47355 * 300.00133 * 24 23 21 44 44 H 1.09001 * 109.47098 * 59.99742 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6103 1.9797 0.8456 5 6 3.5426 1.4440 0.1150 6 1 4.1433 1.8902 -0.6637 7 6 4.1505 0.8757 1.2144 8 7 5.4618 0.8767 1.3144 9 14 3.1115 0.1045 2.5616 10 1 2.8877 -1.3309 2.2537 11 1 3.8170 0.2276 3.8625 12 1 1.8037 0.8037 2.6396 13 7 1.6439 2.1019 -1.2514 14 6 1.4731 3.5475 -1.0536 15 1 1.0781 3.7513 -0.0584 16 6 0.5426 4.1360 -2.1393 17 6 1.5590 4.6109 -3.2014 18 7 2.8053 4.8593 -2.4674 19 6 3.9258 5.6490 -2.9844 20 6 4.8913 4.7317 -3.7378 21 6 6.0442 5.5439 -4.2691 22 8 6.0888 6.7342 -4.0664 23 8 7.0209 4.9451 -4.9684 24 6 8.0997 5.7893 -5.4498 25 6 2.7867 4.2690 -1.2600 26 8 3.6912 4.3094 -0.4530 27 1 -0.3634 -1.0266 -0.0486 28 1 -0.3633 0.4711 0.9133 29 1 -0.3633 0.5552 -0.8647 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 5.8894 0.4772 2.0880 33 1 0.8053 1.6870 -1.6291 34 1 -0.1166 3.3690 -2.5457 35 1 -0.0324 4.9748 -1.7473 36 1 1.2098 5.5293 -3.6735 37 1 1.7116 3.8359 -3.9524 38 1 3.5485 6.4147 -3.6621 39 1 4.4489 6.1240 -2.1544 40 1 5.2685 3.9660 -3.0599 41 1 4.3680 4.2567 -4.5676 42 1 8.8202 5.1815 -5.9972 43 1 7.6942 6.5557 -6.1104 44 1 8.5948 6.2645 -4.6029 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595531822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:03 Heat of formation + Delta-G solvation = -102.087687 kcal Electronic energy + Delta-G solvation = -25310.780157 eV Core-core repulsion = 21650.003901 eV Total energy + Delta-G solvation = -3660.776256 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -40.53236 -39.91594 -36.72257 -36.40065 -35.74969 -33.76606 -31.92596 -31.19356 -29.29658 -27.66092 -27.18815 -25.76826 -24.20164 -22.52248 -21.41147 -20.70913 -19.95197 -18.83687 -17.64252 -16.74365 -16.70074 -16.60318 -16.04146 -15.85385 -15.02605 -14.87142 -14.48287 -14.08886 -13.80346 -13.53486 -13.32227 -12.96871 -12.94150 -12.68901 -12.55557 -12.30770 -12.25029 -12.01468 -11.88825 -11.78876 -11.47730 -11.24798 -11.05492 -10.84698 -10.81363 -10.51776 -10.38183 -10.24073 -9.96165 -9.40185 -9.25712 -8.88946 -8.38197 -8.33743 -7.51895 -5.85503 -3.79581 2.21290 2.60465 3.31579 3.33048 3.42686 3.45287 3.46318 4.53496 4.65804 4.74997 4.78288 4.89886 5.00400 5.01920 5.07028 5.10039 5.24432 5.38972 5.42633 5.49070 5.55693 5.58878 5.69712 5.82217 5.83547 5.91647 5.93229 5.95063 6.05700 6.09073 6.36711 6.42212 6.58403 6.66314 6.77430 6.92615 7.13642 7.56065 7.72841 7.79524 7.85089 8.19210 8.84335 8.92048 9.31465 9.76208 11.28815 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.015486 B = 0.004561 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.600324 B = 6137.246658 C = 7299.765052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.138 4.138 3 C 0.189 3.811 4 H 0.004 0.996 5 C -0.475 4.475 6 H 0.083 0.917 7 C 0.066 3.934 8 N -0.900 5.900 9 Si 0.877 3.123 10 H -0.281 1.281 11 H -0.299 1.299 12 H -0.270 1.270 13 N -0.656 5.656 14 C 0.065 3.935 15 H 0.070 0.930 16 C -0.137 4.137 17 C 0.115 3.885 18 N -0.629 5.629 19 C 0.148 3.852 20 C -0.135 4.135 21 C 0.471 3.529 22 O -0.514 6.514 23 O -0.358 6.358 24 C 0.035 3.965 25 C 0.531 3.469 26 O -0.481 6.481 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.259 0.741 33 H 0.328 0.672 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.061 0.939 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.722 7.648 -13.732 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.176 4.176 3 C 0.081 3.919 4 H 0.022 0.978 5 C -0.514 4.514 6 H 0.101 0.899 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.708 3.292 10 H -0.209 1.209 11 H -0.226 1.226 12 H -0.196 1.196 13 N -0.291 5.291 14 C -0.049 4.049 15 H 0.088 0.912 16 C -0.176 4.176 17 C -0.009 4.009 18 N -0.366 5.366 19 C 0.025 3.975 20 C -0.174 4.174 21 C 0.314 3.686 22 O -0.402 6.402 23 O -0.275 6.275 24 C -0.058 4.058 25 C 0.316 3.684 26 O -0.349 6.349 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.148 0.852 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.137 0.863 41 H 0.125 0.875 42 H 0.118 0.882 43 H 0.079 0.921 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.317 8.079 -13.339 16.826 hybrid contribution -1.080 -0.469 1.183 1.669 sum -7.397 7.610 -12.155 16.136 Atomic orbital electron populations 1.21916 0.98220 1.00578 1.00667 1.22184 0.92874 1.00525 1.02027 1.19781 0.97582 0.89050 0.85467 0.97811 1.20923 0.88324 1.35692 1.06413 0.89887 1.24901 0.94622 0.96401 0.97464 1.69881 1.08306 1.46072 1.29721 0.87045 0.80658 0.79506 0.81998 1.20866 1.22633 1.19568 1.60368 1.37893 0.98910 1.31897 1.22118 0.93206 0.91357 0.98247 0.91184 1.22822 0.97044 1.01401 0.96295 1.21881 0.83803 1.00400 0.94780 1.48203 1.16587 1.54049 1.17808 1.20916 0.86361 0.91477 0.98785 1.21893 0.92671 1.00241 1.02557 1.23754 0.82945 0.87280 0.74624 1.90652 1.77403 1.16776 1.55392 1.86544 1.32922 1.42732 1.65272 1.23248 0.87822 0.95179 0.99592 1.20746 0.89086 0.77762 0.80760 1.90834 1.39864 1.57672 1.46571 0.93538 0.93596 0.93245 0.91290 0.92611 0.93068 0.85165 0.89363 0.90137 0.91291 0.91260 0.90120 0.89316 0.86273 0.87488 0.88182 0.92065 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.79 37.16 0.36 -2.14 16 2 C -0.14 -2.87 5.00 -26.73 -0.13 -3.00 16 3 C 0.19 4.37 1.63 -68.87 -0.11 4.26 16 4 H 0.00 0.11 6.43 -51.92 -0.33 -0.23 16 5 C -0.47 -13.66 7.97 -34.44 -0.27 -13.93 16 6 H 0.08 2.69 7.20 -52.49 -0.38 2.32 16 7 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 8 N -0.90 -28.88 13.96 55.43 0.77 -28.11 16 9 Si 0.88 22.52 24.41 -169.99 -4.15 18.37 16 10 H -0.28 -6.95 6.83 56.52 0.39 -6.56 16 11 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 12 H -0.27 -6.62 6.53 56.52 0.37 -6.25 16 13 N -0.66 -12.35 6.18 -100.97 -0.62 -12.98 16 14 C 0.06 1.11 3.25 -67.72 -0.22 0.89 16 15 H 0.07 1.27 7.44 -51.93 -0.39 0.88 16 16 C -0.14 -1.52 6.84 -25.10 -0.17 -1.69 16 17 C 0.11 1.25 7.35 -3.12 -0.02 1.23 16 18 N -0.63 -9.52 2.93 -172.41 -0.51 -10.03 16 19 C 0.15 2.08 5.22 -4.04 -0.02 2.06 16 20 C -0.13 -1.85 6.14 -27.88 -0.17 -2.02 16 21 C 0.47 6.72 7.96 36.00 0.29 7.01 16 22 O -0.51 -8.23 15.73 -18.75 -0.29 -8.53 16 23 O -0.36 -4.77 10.56 -39.25 -0.41 -5.19 16 24 C 0.04 0.35 10.56 101.05 1.07 1.41 16 25 C 0.53 10.58 7.09 -10.86 -0.08 10.51 16 26 O -0.48 -12.32 15.85 5.55 0.09 -12.23 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.67 6.36 -51.93 -0.33 0.34 16 30 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.06 1.27 3.22 -51.93 -0.17 1.11 16 32 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 33 H 0.33 5.09 5.77 -39.29 -0.23 4.87 16 34 H 0.09 0.80 7.59 -51.93 -0.39 0.41 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 39 H 0.09 1.46 7.89 -51.93 -0.41 1.05 16 40 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 41 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 44 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -36.78 352.18 -6.28 -43.06 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.88 Total: 3.84 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 0.42 Total: 6.47 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.36 Total: -51.11 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.62 Total: -25.95 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.15 Total: 18.37 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.78 -6.28 -43.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595531822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.024 kcal (2) G-P(sol) polarization free energy of solvation -36.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds