Wall clock time and date at job start Tue Mar 31 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 116.99669 * 2 1 4 4 O 1.20827 * 120.00184 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99955 * 180.02562 * 3 2 1 6 6 C 1.53070 * 109.44585 * 59.78903 * 5 3 2 7 7 C 1.53195 * 109.29524 * 181.23845 * 6 5 3 8 8 N 1.46919 * 108.89273 * 305.57804 * 7 6 5 9 9 C 1.34784 * 120.63188 * 233.51696 * 8 7 6 10 10 O 1.21276 * 119.99470 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99966 * 179.97438 * 9 8 7 12 12 N 1.46902 * 109.47075 * 179.97438 * 11 9 8 13 13 C 1.46890 * 111.00197 * 180.02562 * 12 11 9 14 14 H 1.08996 * 109.47509 * 324.99859 * 13 12 11 15 15 C 1.53004 * 109.47409 * 85.00130 * 13 12 11 16 16 C 1.50701 * 109.47299 * 205.00126 * 13 12 11 17 17 H 1.08002 * 119.99833 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00058 * 180.02562 * 16 13 12 19 19 N 1.31508 * 120.00341 * 359.97438 * 18 16 13 20 20 Si 1.86806 * 119.99830 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47133 * 89.99519 * 20 18 16 22 22 H 1.48503 * 109.46921 * 209.99540 * 20 18 16 23 23 H 1.48506 * 109.46927 * 329.99528 * 20 18 16 24 24 C 1.46928 * 118.73982 * 53.53793 * 8 7 6 25 25 C 1.53039 * 109.46083 * 179.97438 * 5 3 2 26 26 H 1.09003 * 109.46907 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47527 * 300.00181 * 1 2 3 28 28 H 1.08992 * 109.47440 * 60.00762 * 1 2 3 29 29 H 1.09007 * 109.45494 * 299.96161 * 5 3 2 30 30 H 1.08997 * 109.38860 * 61.36032 * 6 5 3 31 31 H 1.09003 * 109.62046 * 301.25375 * 6 5 3 32 32 H 1.09002 * 109.58720 * 185.71834 * 7 6 5 33 33 H 1.08996 * 109.58651 * 65.43731 * 7 6 5 34 34 H 1.09000 * 109.47595 * 299.99863 * 11 9 8 35 35 H 1.09005 * 109.47205 * 60.00098 * 11 9 8 36 36 H 1.00902 * 110.99687 * 56.04074 * 12 11 9 37 37 H 1.08998 * 109.47345 * 59.99825 * 15 13 12 38 38 H 1.09004 * 109.47082 * 180.02562 * 15 13 12 39 39 H 1.09001 * 109.46771 * 299.99375 * 15 13 12 40 40 H 0.96998 * 120.00496 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.58787 * 66.18123 * 24 8 7 42 42 H 1.09007 * 109.58600 * 186.46436 * 24 8 7 43 43 H 1.09002 * 109.49876 * 58.67167 * 25 5 3 44 44 H 1.09005 * 109.52615 * 298.59417 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.1127 0.5766 -1.2483 7 6 5.6435 0.6319 -1.2298 8 7 6.0673 2.0310 -1.0837 9 6 6.9335 2.5810 -1.9577 10 8 7.3710 1.9197 -2.8753 11 6 7.3582 4.0177 -1.7946 12 7 8.2990 4.3747 -2.8649 13 6 8.7360 5.7713 -2.7375 14 1 7.9122 6.3768 -2.3599 15 6 9.9146 5.8503 -1.7649 16 6 9.1627 6.2892 -4.0868 17 1 9.1145 5.6451 -4.9524 18 6 9.6157 7.5850 -4.2161 19 7 9.6749 8.3692 -3.1621 20 14 10.1439 8.2272 -5.8889 21 1 8.9754 8.8300 -6.5793 22 1 11.2000 9.2563 -5.7131 23 1 10.6762 7.1058 -6.7041 24 6 5.5294 2.8191 0.0336 25 6 3.9998 2.7427 -0.0011 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 3.9560 0.7812 0.8896 30 1 3.7410 1.0836 -2.1387 31 1 3.7862 -0.4633 -1.2582 32 1 6.0351 0.2270 -2.1630 33 1 6.0202 0.0465 -0.3910 34 1 6.4822 4.6641 -1.8499 35 1 7.8436 4.1456 -0.8270 36 1 7.8950 4.2032 -3.7735 37 1 10.7385 5.2448 -2.1425 38 1 10.2385 6.8867 -1.6701 39 1 9.6059 5.4758 -0.7889 40 1 9.9932 9.2810 -3.2531 41 1 5.8947 2.4126 0.9767 42 1 5.8478 3.8570 -0.0647 43 1 3.5909 3.2432 0.8766 44 1 3.6311 3.2311 -0.9031 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602862246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:24 Heat of formation + Delta-G solvation = -144.542700 kcal Electronic energy + Delta-G solvation = -24450.834375 eV Core-core repulsion = 20788.217131 eV Total energy + Delta-G solvation = -3662.617244 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.86416 -40.96863 -38.57876 -37.54726 -37.29978 -34.58324 -34.17397 -32.29868 -30.90850 -29.13293 -27.73475 -27.16733 -26.09982 -24.20728 -23.05544 -21.82513 -21.36499 -20.06055 -18.82648 -18.68610 -18.06786 -17.59921 -17.30665 -16.94338 -16.74219 -16.57019 -15.59199 -15.37944 -15.19574 -14.95642 -14.75086 -14.59828 -14.32980 -14.23064 -13.76132 -13.49401 -13.36150 -13.14616 -13.06774 -12.84133 -12.82130 -12.69092 -12.31984 -12.27317 -12.18593 -11.99566 -11.89534 -11.78021 -11.75110 -11.43258 -10.94900 -10.73079 -10.55405 -9.68974 -9.08568 -8.14498 -6.27620 1.10632 1.41470 1.42853 1.53839 1.60096 1.72821 1.96243 2.42003 3.14100 3.45391 3.48178 3.66853 3.72562 3.81893 3.99322 4.15579 4.28803 4.30572 4.31806 4.36059 4.40658 4.42802 4.63789 4.68840 4.72167 4.78270 4.83669 4.85223 4.93998 5.04694 5.08476 5.19467 5.21885 5.36347 5.44329 5.58506 5.66100 5.84370 6.21610 6.29859 6.42883 6.67159 6.72501 6.92940 7.21665 7.42260 8.91106 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.026874 B = 0.002712 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.657479 B =10320.929317 C =10550.992657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.466 3.534 4 O -0.540 6.540 5 C -0.073 4.073 6 C -0.115 4.115 7 C 0.112 3.888 8 N -0.614 5.614 9 C 0.518 3.482 10 O -0.568 6.568 11 C 0.045 3.955 12 N -0.681 5.681 13 C 0.217 3.783 14 H -0.019 1.019 15 C -0.114 4.114 16 C -0.541 4.541 17 H 0.052 0.948 18 C 0.017 3.983 19 N -0.914 5.914 20 Si 0.961 3.039 21 H -0.275 1.275 22 H -0.279 1.279 23 H -0.273 1.273 24 C 0.105 3.895 25 C -0.116 4.116 26 H 0.132 0.868 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.146 0.854 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.333 0.667 37 H 0.023 0.977 38 H 0.061 0.939 39 H 0.030 0.970 40 H 0.264 0.736 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.832 -17.558 12.172 27.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.311 3.689 4 O -0.429 6.429 5 C -0.092 4.092 6 C -0.154 4.154 7 C -0.010 4.010 8 N -0.349 5.349 9 C 0.307 3.693 10 O -0.447 6.447 11 C -0.088 4.088 12 N -0.313 5.313 13 C 0.109 3.891 14 H -0.001 1.001 15 C -0.173 4.173 16 C -0.580 4.580 17 H 0.070 0.930 18 C -0.183 4.183 19 N -0.553 5.553 20 Si 0.786 3.214 21 H -0.200 1.200 22 H -0.205 1.205 23 H -0.198 1.198 24 C -0.016 4.016 25 C -0.155 4.155 26 H 0.150 0.850 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.163 0.837 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.151 0.849 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.234 -17.695 12.076 26.879 hybrid contribution -0.833 1.303 -1.259 1.995 sum -17.067 -16.392 10.816 26.019 Atomic orbital electron populations 1.23529 0.75069 1.05683 1.02316 1.86500 1.24720 1.32757 1.83551 1.24178 0.92673 0.81106 0.70973 1.90678 1.68043 1.37541 1.46679 1.21162 0.85685 0.99126 1.03238 1.21862 0.95062 1.02701 0.95726 1.21675 0.93633 0.81525 1.04144 1.48236 1.44616 1.13383 1.28634 1.20823 0.77998 0.89376 0.81103 1.90648 1.56174 1.64059 1.33789 1.21900 0.96072 0.92042 0.98757 1.60402 1.41070 1.24708 1.05119 1.18968 0.92752 0.82356 0.94981 1.00122 1.21561 0.98417 1.01087 0.96188 1.21555 1.44421 0.97508 0.94488 0.92955 1.25661 0.95364 0.96880 1.00362 1.69987 1.47399 1.07602 1.30274 0.85521 0.78085 0.77955 0.79842 1.20040 1.20458 1.19759 1.21998 0.92494 0.97351 0.89804 1.21803 0.95355 0.94270 1.04037 0.85004 0.91884 0.92537 0.83683 0.92959 0.87076 0.90453 0.88190 0.92369 0.87493 0.84946 0.95786 0.92068 0.95117 0.92673 0.87542 0.88920 0.88445 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.36 10.44 -51.40 -0.54 -5.90 16 3 C 0.47 8.30 7.26 71.24 0.52 8.82 16 4 O -0.54 -13.31 15.73 21.96 0.35 -12.96 16 5 C -0.07 -0.96 2.59 -11.50 -0.03 -0.99 16 6 C -0.12 -1.65 5.31 30.68 0.16 -1.49 16 7 C 0.11 1.99 6.43 86.36 0.56 2.55 16 8 N -0.61 -13.87 2.97 -818.90 -2.44 -16.30 16 9 C 0.52 17.03 7.74 87.66 0.68 17.71 16 10 O -0.57 -23.39 15.61 -3.02 -0.05 -23.43 16 11 C 0.04 1.57 4.31 85.56 0.37 1.93 16 12 N -0.68 -31.01 5.93 -499.47 -2.96 -33.97 16 13 C 0.22 11.22 2.60 44.17 0.11 11.34 16 14 H -0.02 -1.03 7.80 -2.39 -0.02 -1.04 16 15 C -0.11 -5.68 9.19 71.98 0.66 -5.02 16 16 C -0.54 -30.68 8.59 25.60 0.22 -30.46 16 17 H 0.05 2.99 7.62 -2.91 -0.02 2.96 16 18 C 0.02 0.95 5.30 84.66 0.45 1.40 16 19 N -0.91 -52.36 11.32 21.45 0.24 -52.12 16 20 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 24 C 0.11 1.67 6.34 86.36 0.55 2.22 16 25 C -0.12 -1.83 4.66 30.67 0.14 -1.69 16 26 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 28 H 0.06 0.68 8.13 -2.39 -0.02 0.67 16 29 H 0.15 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 1.14 8.09 -2.39 -0.02 1.12 16 32 H 0.08 1.77 7.01 -2.39 -0.02 1.76 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.94 7.61 -2.39 -0.02 1.92 16 35 H 0.11 3.41 7.23 -2.38 -0.02 3.39 16 36 H 0.33 15.85 7.93 -89.69 -0.71 15.14 16 37 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 39 H 0.03 1.31 7.45 -2.39 -0.02 1.29 16 40 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 41 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.09 1.59 5.93 -2.38 -0.01 1.57 16 43 H 0.10 1.36 8.07 -2.39 -0.02 1.34 16 44 H 0.05 1.14 8.13 -2.38 -0.02 1.12 16 Total: -1.00 -73.55 356.08 2.51 -71.05 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.29 Total: 19.50 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.58 Total: 7.80 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -5.15 Total: -102.39 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -0.24 Total: -42.29 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -73.55 2.51 -71.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602862246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.497 kcal (2) G-P(sol) polarization free energy of solvation -73.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds