Wall clock time and date at job start Tue Mar 31 2020 03:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46946 * 2 1 4 4 H 1.09007 * 109.47113 * 55.00303 * 3 2 1 5 5 C 1.52999 * 109.47501 * 295.00265 * 3 2 1 6 6 C 1.52999 * 109.47326 * 174.99896 * 3 2 1 7 7 H 1.08994 * 109.47673 * 305.00475 * 6 3 2 8 8 N 1.46500 * 109.47349 * 184.99700 * 6 3 2 9 9 C 1.34777 * 119.99708 * 154.99812 * 8 6 3 10 10 O 1.21284 * 120.00162 * 0.02562 * 9 8 6 11 11 C 1.50697 * 119.99866 * 180.02562 * 9 8 6 12 12 N 1.46502 * 109.47248 * 180.02562 * 11 9 8 13 13 C 1.36939 * 120.00157 * 270.00343 * 12 11 9 14 14 H 1.07993 * 120.00645 * 192.62347 * 13 12 11 15 15 C 1.38820 * 119.99597 * 12.62108 * 13 12 11 16 16 N 1.31614 * 120.00119 * 25.32715 * 15 13 12 17 17 Si 1.86799 * 119.99857 * 205.32000 * 15 13 12 18 18 H 1.48501 * 109.47355 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47005 * 120.00651 * 17 15 13 20 20 H 1.48499 * 109.47212 * 240.00386 * 17 15 13 21 21 C 1.46495 * 120.00226 * 90.00175 * 12 11 9 22 22 C 1.53001 * 117.50114 * 194.07936 * 21 12 11 23 23 C 1.52999 * 60.00161 * 252.51232 * 22 21 12 24 24 C 1.50707 * 109.46751 * 65.00071 * 6 3 2 25 25 O 1.20833 * 119.99978 * 119.99926 * 24 6 3 26 26 O 1.34228 * 120.00251 * 300.00263 * 24 6 3 27 27 H 1.09005 * 109.46533 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46842 * 299.99316 * 1 2 3 29 29 H 1.08990 * 109.47395 * 60.00141 * 1 2 3 30 30 H 1.09000 * 109.46842 * 240.00684 * 2 1 3 31 31 H 1.09001 * 109.47407 * 120.00329 * 2 1 3 32 32 H 1.08999 * 109.47618 * 180.02562 * 5 3 2 33 33 H 1.08998 * 109.47229 * 300.00119 * 5 3 2 34 34 H 1.09004 * 109.46946 * 59.99929 * 5 3 2 35 35 H 0.96992 * 120.00264 * 335.00649 * 8 6 3 36 36 H 1.09007 * 109.47256 * 60.00810 * 11 9 8 37 37 H 1.08995 * 109.47580 * 300.00924 * 11 9 8 38 38 H 0.96997 * 120.00325 * 175.05540 * 16 15 13 39 39 H 1.08998 * 115.54863 * 339.79298 * 21 12 11 40 40 H 1.08998 * 117.49869 * 0.02562 * 22 21 12 41 41 H 1.08997 * 117.49714 * 145.01891 * 22 21 12 42 42 H 1.09003 * 117.49857 * 252.51531 * 23 22 21 43 43 H 1.08999 * 117.52251 * 107.47869 * 23 22 21 44 44 H 0.96697 * 116.99962 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 1 3.8571 0.8801 1.0112 8 7 4.0432 2.8239 0.2457 9 6 5.2189 3.0789 0.8534 10 8 5.8810 2.1664 1.3004 11 6 5.7107 4.4979 0.9773 12 7 7.0014 4.5086 1.6704 13 6 7.0451 4.6166 3.0348 14 1 7.9810 4.8290 3.5301 15 6 5.8862 4.4532 3.7814 16 7 4.8924 3.7339 3.3048 17 14 5.7375 5.2539 5.4625 18 1 6.9831 6.0035 5.7657 19 1 4.5843 6.1895 5.4648 20 1 5.5267 4.2059 6.4931 21 6 8.2454 4.4038 0.9038 22 6 9.5276 4.0899 1.6773 23 6 9.2985 5.4937 1.1137 24 6 4.1705 0.8074 -1.0984 25 8 4.9245 1.4408 -1.7987 26 8 3.8724 -0.4635 -1.4109 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.9989 3.1541 -1.3075 33 1 2.0697 1.5876 -2.1491 34 1 0.5488 2.1253 -1.3968 35 1 3.5138 3.5537 -0.1119 36 1 4.9884 5.0846 1.5450 37 1 5.8287 4.9298 -0.0164 38 1 4.1124 3.5599 3.8546 39 1 8.1464 3.9858 -0.0980 40 1 9.4455 3.9609 2.7565 41 1 10.2724 3.4650 1.1845 42 1 9.8926 5.7924 0.2499 43 1 9.0656 6.2889 1.8218 44 1 4.2850 -0.8285 -2.2056 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736880832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:36 Heat of formation + Delta-G solvation = -75.844150 kcal Electronic energy + Delta-G solvation = -25902.020682 eV Core-core repulsion = 22242.382431 eV Total energy + Delta-G solvation = -3659.638251 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.40065 -38.27800 -37.01330 -36.33848 -35.76984 -33.38674 -32.95585 -30.53242 -29.73383 -27.79112 -26.17155 -24.07344 -23.66371 -21.85450 -21.36916 -19.94892 -19.70652 -19.39007 -17.72296 -16.95809 -16.29559 -15.96754 -15.59836 -15.42754 -14.93404 -14.54451 -14.28187 -13.93037 -13.86354 -13.51807 -13.12086 -12.81363 -12.73294 -12.31267 -12.11005 -11.86274 -11.73996 -11.64282 -11.30879 -11.21325 -10.81639 -10.77751 -10.65641 -10.64134 -10.48652 -10.47497 -10.28365 -10.17849 -9.92458 -9.77684 -9.34346 -8.56709 -8.32003 -8.22740 -6.77515 -5.84523 -3.10017 2.55843 3.18156 3.36020 3.44958 3.47816 3.99983 4.36259 4.54805 4.72560 4.92602 4.93034 4.96989 5.21718 5.30627 5.39039 5.41633 5.48082 5.62999 5.65917 5.87034 5.91546 5.91604 5.98542 6.00467 6.07932 6.09728 6.20467 6.32204 6.36313 6.47843 6.49124 6.58772 6.69609 6.74559 6.94258 7.05947 7.12886 7.27330 7.81175 8.20328 8.24307 8.56787 9.13007 9.68777 9.85550 10.24315 11.25120 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.016083 B = 0.005145 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.581172 B = 5441.203909 C = 6641.100805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.092 4.092 4 H 0.093 0.907 5 C -0.153 4.153 6 C 0.170 3.830 7 H 0.119 0.881 8 N -0.728 5.728 9 C 0.538 3.462 10 O -0.521 6.521 11 C 0.168 3.832 12 N -0.538 5.538 13 C -0.250 4.250 14 H 0.081 0.919 15 C 0.001 3.999 16 N -0.895 5.895 17 Si 0.905 3.095 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.293 1.293 21 C 0.131 3.869 22 C -0.201 4.201 23 C -0.222 4.222 24 C 0.467 3.533 25 O -0.509 6.509 26 O -0.518 6.518 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.391 0.609 36 H 0.098 0.902 37 H 0.044 0.956 38 H 0.254 0.746 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.445 -4.122 -9.691 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.111 4.111 4 H 0.112 0.888 5 C -0.210 4.210 6 C 0.061 3.939 7 H 0.137 0.863 8 N -0.384 5.384 9 C 0.324 3.676 10 O -0.392 6.392 11 C 0.038 3.962 12 N -0.252 5.252 13 C -0.379 4.379 14 H 0.099 0.901 15 C -0.197 4.197 16 N -0.540 5.540 17 Si 0.736 3.264 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.221 1.221 21 C 0.021 3.979 22 C -0.240 4.240 23 C -0.263 4.263 24 C 0.307 3.693 25 O -0.395 6.395 26 O -0.329 6.329 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.225 0.775 36 H 0.116 0.884 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -8.071 -4.396 -9.077 12.917 hybrid contribution -0.042 0.177 0.350 0.395 sum -8.112 -4.219 -8.727 12.640 Atomic orbital electron populations 1.21802 0.95906 1.01377 1.01704 1.21697 0.95554 0.95279 1.03761 1.21384 0.91985 0.98015 0.99674 0.88836 1.21963 1.01777 1.00690 0.96547 1.20272 0.93131 0.86917 0.93617 0.86314 1.46115 1.24849 1.04617 1.62854 1.22000 0.78519 0.93714 0.73321 1.90519 1.56372 1.46983 1.45376 1.20563 0.88935 0.91880 0.94817 1.43528 0.98001 1.80700 1.03007 1.19228 0.95054 1.41861 0.81748 0.90111 1.24760 0.97511 0.99242 0.98156 1.69801 1.09443 1.37938 1.36771 0.86154 0.77562 0.79095 0.83602 1.20406 1.21606 1.22051 1.20909 0.83190 0.98886 0.94874 1.23107 1.01518 0.98093 1.01239 1.23402 1.06859 0.93154 1.02898 1.24632 0.78539 0.79128 0.86969 1.90674 1.34078 1.63562 1.51234 1.84645 1.69131 1.30253 1.48879 0.92909 0.92800 0.92734 0.89961 0.91521 0.92225 0.93041 0.91707 0.77492 0.88417 0.93805 0.93566 0.89236 0.88537 0.90704 0.90699 0.89317 0.74508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.67 37.16 0.36 -1.00 16 2 C -0.13 -1.36 4.88 -26.73 -0.13 -1.49 16 3 C -0.09 -1.12 2.32 -90.62 -0.21 -1.33 16 4 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 5 C -0.15 -1.64 8.50 37.16 0.32 -1.33 16 6 C 0.17 2.80 2.29 -69.08 -0.16 2.64 16 7 H 0.12 2.28 7.58 -51.93 -0.39 1.89 16 8 N -0.73 -13.48 4.54 -54.93 -0.25 -13.73 16 9 C 0.54 12.61 5.62 -10.99 -0.06 12.55 16 10 O -0.52 -14.57 15.51 5.55 0.09 -14.48 16 11 C 0.17 3.90 5.48 -5.19 -0.03 3.87 16 12 N -0.54 -13.53 2.38 -167.02 -0.40 -13.93 16 13 C -0.25 -6.78 8.90 -15.06 -0.13 -6.91 16 14 H 0.08 2.19 6.27 -52.49 -0.33 1.86 16 15 C 0.00 0.03 4.83 -17.43 -0.08 -0.05 16 16 N -0.89 -24.44 8.85 55.49 0.49 -23.95 16 17 Si 0.91 21.52 29.63 -169.99 -5.04 16.49 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 C 0.13 2.95 6.60 -67.93 -0.45 2.50 16 22 C -0.20 -4.20 9.77 -26.73 -0.26 -4.46 16 23 C -0.22 -4.33 10.13 -26.73 -0.27 -4.60 16 24 C 0.47 7.67 6.13 36.01 0.22 7.89 16 25 O -0.51 -10.00 17.08 -18.76 -0.32 -10.32 16 26 O -0.52 -6.44 10.65 -39.25 -0.42 -6.86 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.45 6.56 -51.93 -0.34 0.11 16 30 H 0.08 0.89 5.77 -51.93 -0.30 0.59 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.65 6.77 -51.93 -0.35 0.29 16 33 H 0.05 0.58 7.07 -51.93 -0.37 0.21 16 34 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 35 H 0.39 6.18 7.18 -40.82 -0.29 5.88 16 36 H 0.10 2.34 6.62 -51.92 -0.34 1.99 16 37 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 38 H 0.25 6.81 8.32 -40.82 -0.34 6.47 16 39 H 0.09 1.95 8.14 -51.93 -0.42 1.52 16 40 H 0.10 2.19 6.44 -51.93 -0.33 1.86 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 44 H 0.40 3.33 9.10 45.56 0.41 3.74 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -33.69 352.54 -7.34 -41.03 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -5.92 Total: 12.18 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -0.89 Total: 8.27 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.16 Total: -51.61 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.65 Total: -31.66 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.04 Total: 16.49 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.69 -7.34 -41.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736880832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.819 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds