Wall clock time and date at job start Tue Mar 31 2020 05:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47607 * 2 1 4 4 C 1.50708 * 109.47498 * 119.99971 * 2 1 3 5 5 O 1.20827 * 120.00088 * 101.77299 * 4 2 1 6 6 O 1.34231 * 119.99693 * 281.78692 * 4 2 1 7 7 C 1.45195 * 116.99694 * 179.97438 * 6 4 2 8 8 C 1.50699 * 109.47165 * 179.97438 * 7 6 4 9 9 O 1.21301 * 119.99902 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00422 * 179.97438 * 8 7 6 11 11 C 1.37097 * 120.00180 * 179.97438 * 10 8 7 12 12 H 1.07998 * 119.99990 * 0.02562 * 11 10 8 13 13 C 1.38953 * 119.99917 * 180.02562 * 11 10 8 14 14 N 1.31410 * 119.99667 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99783 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47100 * 179.97438 * 15 13 11 17 17 H 1.48507 * 109.47426 * 299.99768 * 15 13 11 18 18 H 1.48500 * 109.47747 * 59.99890 * 15 13 11 19 19 N 1.46906 * 109.47301 * 239.99653 * 2 1 3 20 20 C 1.47848 * 110.99746 * 47.90066 * 19 2 1 21 21 H 1.09004 * 110.37307 * 27.53039 * 20 19 2 22 22 C 1.53001 * 110.37128 * 265.19331 * 20 19 2 23 23 C 1.54902 * 104.79588 * 146.36418 * 20 19 2 24 24 C 1.55142 * 101.65431 * 322.92794 * 23 20 19 25 25 C 1.47446 * 111.00030 * 168.73886 * 19 2 1 26 26 H 1.09003 * 109.88395 * 117.34135 * 25 19 2 27 27 C 1.52999 * 109.88975 * 356.31394 * 25 19 2 28 28 H 1.08996 * 109.47081 * 59.99931 * 1 2 3 29 29 H 1.09001 * 109.47376 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46830 * 300.00274 * 1 2 3 31 31 H 1.09002 * 109.47665 * 59.99985 * 7 6 4 32 32 H 1.08996 * 109.47565 * 299.99390 * 7 6 4 33 33 H 0.96997 * 119.99732 * 0.02562 * 10 8 7 34 34 H 0.97001 * 119.99264 * 180.02562 * 14 13 11 35 35 H 1.09010 * 109.46803 * 59.99852 * 22 20 19 36 36 H 1.08991 * 109.47176 * 179.97438 * 22 20 19 37 37 H 1.08997 * 109.47167 * 300.00213 * 22 20 19 38 38 H 1.08994 * 110.98763 * 204.83461 * 23 20 19 39 39 H 1.09004 * 110.98885 * 81.02164 * 23 20 19 40 40 H 1.08996 * 110.70285 * 277.27409 * 24 23 20 41 41 H 1.08998 * 110.70667 * 154.03704 * 24 23 20 42 42 H 1.09004 * 109.47052 * 61.54038 * 27 25 19 43 43 H 1.08999 * 109.46928 * 181.53893 * 27 25 19 44 44 H 1.08994 * 109.47124 * 301.54112 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.4351 -1.8468 1.1500 6 8 2.0322 -0.0808 2.4160 7 6 2.5298 -0.8263 3.5583 8 6 2.4543 0.0355 4.7922 9 8 2.0239 1.1671 4.7162 10 7 2.8649 -0.4509 5.9802 11 6 2.7967 0.3335 7.1026 12 1 2.4135 1.3409 7.0349 13 6 3.2205 -0.1679 8.3273 14 7 3.6863 -1.3939 8.4096 15 14 3.1269 0.9005 9.8566 16 1 3.6352 0.1378 11.0251 17 1 3.9547 2.1180 9.6615 18 1 1.7160 1.2950 10.0994 19 7 2.0197 -0.6926 -1.1994 20 6 1.3238 -0.2097 -2.4113 21 1 0.9884 0.8181 -2.2721 22 6 0.1380 -1.1181 -2.7421 23 6 2.3885 -0.2822 -3.5341 24 6 3.6747 0.1354 -2.7739 25 6 3.4686 -0.4839 -1.3755 26 1 3.9911 -1.4384 -1.3121 27 6 3.9920 0.4684 -0.2985 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.5656 -1.1155 3.3804 32 1 1.9225 -1.7201 3.7014 33 1 3.2094 -1.3556 6.0409 34 1 3.9818 -1.7439 9.2646 35 1 -0.5626 -1.1196 -1.9069 36 1 -0.3641 -0.7490 -3.6363 37 1 0.4954 -2.1326 -2.9182 38 1 2.1612 0.4227 -4.3337 39 1 2.4769 -1.2965 -3.9234 40 1 3.7479 1.2209 -2.7076 41 1 4.5593 -0.2829 -3.2541 42 1 3.8323 0.0272 0.6854 43 1 5.0576 0.6394 -0.4514 44 1 3.4591 1.4170 -0.3621 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741016739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:13 Heat of formation + Delta-G solvation = -106.421807 kcal Electronic energy + Delta-G solvation = -25050.738759 eV Core-core repulsion = 21389.774562 eV Total energy + Delta-G solvation = -3660.964198 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.03871 -39.39675 -38.03022 -35.94504 -33.99060 -33.85489 -33.16379 -31.36619 -29.29991 -28.40833 -28.20295 -25.21643 -24.45245 -23.65399 -21.28761 -20.78755 -19.55703 -19.14519 -18.05185 -17.53587 -16.74303 -16.46510 -16.19357 -15.81157 -15.44357 -14.60153 -14.54151 -14.04964 -13.88572 -13.73736 -13.57337 -13.19933 -13.08196 -12.69185 -12.43864 -12.35367 -12.12960 -12.04895 -11.87641 -11.63412 -11.60455 -11.50142 -11.29660 -11.10185 -10.95490 -10.91552 -10.77363 -10.48446 -10.33337 -10.29814 -10.09185 -9.58453 -8.50811 -8.46177 -8.07121 -6.48859 -3.90909 2.42730 2.62328 3.16016 3.23126 3.27659 3.68463 3.75570 4.12222 4.28473 4.39007 4.60216 4.67750 4.83708 4.89569 4.92176 5.04454 5.12573 5.14139 5.16341 5.22771 5.38443 5.41598 5.45679 5.48731 5.56710 5.57023 5.63686 5.67737 5.72845 5.77033 5.83874 5.94129 5.99886 6.07996 6.13751 6.15852 6.70658 6.76347 6.81228 7.48491 7.92147 8.06579 8.50181 9.08105 9.40768 9.90938 10.68389 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.035667 B = 0.002866 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.845285 B = 9768.875339 C = 9956.401415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.083 3.917 3 H 0.086 0.914 4 C 0.464 3.536 5 O -0.495 6.495 6 O -0.330 6.330 7 C 0.062 3.938 8 C 0.439 3.561 9 O -0.576 6.576 10 N -0.553 5.553 11 C -0.303 4.303 12 H 0.105 0.895 13 C 0.025 3.975 14 N -0.898 5.898 15 Si 0.934 3.066 16 H -0.283 1.283 17 H -0.272 1.272 18 H -0.272 1.272 19 N -0.503 5.503 20 C 0.070 3.930 21 H 0.059 0.941 22 C -0.145 4.145 23 C -0.124 4.124 24 C -0.138 4.138 25 C 0.070 3.930 26 H 0.092 0.908 27 C -0.179 4.179 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.395 0.605 34 H 0.274 0.726 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 0.691 -22.358 22.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 H 0.104 0.896 4 C 0.306 3.694 5 O -0.382 6.382 6 O -0.245 6.245 7 C -0.016 4.016 8 C 0.224 3.776 9 O -0.460 6.460 10 N -0.190 5.190 11 C -0.432 4.432 12 H 0.123 0.877 13 C -0.177 4.177 14 N -0.538 5.538 15 Si 0.761 3.239 16 H -0.209 1.209 17 H -0.198 1.198 18 H -0.198 1.198 19 N -0.229 5.229 20 C -0.038 4.038 21 H 0.077 0.923 22 C -0.202 4.202 23 C -0.162 4.162 24 C -0.177 4.177 25 C -0.038 4.038 26 H 0.110 0.890 27 C -0.237 4.237 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.228 0.772 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.795 0.464 -22.129 22.309 hybrid contribution 0.573 0.509 0.916 1.194 sum -2.222 0.973 -21.213 21.351 Atomic orbital electron populations 1.22080 0.91469 1.03699 1.03620 1.21375 0.97181 0.96878 0.87229 0.89621 1.23315 0.75529 0.85759 0.84824 1.90654 1.42973 1.18547 1.86032 1.86549 1.76222 1.45547 1.16196 1.22707 1.00222 0.94669 0.84004 1.19334 0.85931 0.88466 0.83893 1.90557 1.50580 1.19498 1.85407 1.41700 1.55494 1.16041 1.05787 1.19676 1.40436 0.98499 0.84598 0.87686 1.25309 0.96554 0.96455 0.99426 1.69610 1.42014 1.14997 1.27184 0.85862 0.78924 0.79322 0.79793 1.20864 1.19764 1.19753 1.63471 1.03456 1.55284 1.00674 1.22581 0.94941 0.97478 0.88764 0.92322 1.21959 0.96917 1.00032 1.01302 1.22743 0.94125 1.02323 0.96991 1.22888 0.98614 1.00788 0.95391 1.22446 0.88215 0.99096 0.94013 0.89041 1.22535 1.02230 0.99570 0.99315 0.90613 0.90893 0.90481 0.89782 0.89630 0.77164 0.91580 0.91598 0.92509 0.91855 0.90749 0.90397 0.91211 0.90597 0.92024 0.91279 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 7.66 37.15 0.28 -1.36 16 2 C 0.08 1.06 2.04 -68.86 -0.14 0.92 16 3 H 0.09 1.04 5.73 -51.93 -0.30 0.75 16 4 C 0.46 7.71 4.15 36.01 0.15 7.86 16 5 O -0.50 -9.17 15.89 -18.75 -0.30 -9.47 16 6 O -0.33 -6.33 9.74 -45.91 -0.45 -6.78 16 7 C 0.06 1.21 5.94 36.01 0.21 1.43 16 8 C 0.44 10.74 7.86 -10.99 -0.09 10.65 16 9 O -0.58 -16.14 16.08 -14.12 -0.23 -16.37 16 10 N -0.55 -14.15 5.29 -10.96 -0.06 -14.21 16 11 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 12 H 0.11 3.03 7.16 -52.49 -0.38 2.66 16 13 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 14 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 15 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 19 N -0.50 -5.86 4.31 -209.03 -0.90 -6.76 16 20 C 0.07 0.62 2.37 -66.19 -0.16 0.46 16 21 H 0.06 0.49 6.95 -51.93 -0.36 0.13 16 22 C -0.14 -1.16 9.10 37.16 0.34 -0.82 16 23 C -0.12 -0.93 6.49 -24.59 -0.16 -1.08 16 24 C -0.14 -1.13 6.47 -24.91 -0.16 -1.29 16 25 C 0.07 0.77 3.56 -66.72 -0.24 0.54 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 27 C -0.18 -2.10 7.75 37.16 0.29 -1.81 16 28 H 0.08 0.64 5.67 -51.93 -0.29 0.34 16 29 H 0.07 0.82 7.29 -51.93 -0.38 0.44 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.52 8.13 -51.93 -0.42 1.10 16 32 H 0.09 1.56 8.13 -51.93 -0.42 1.13 16 33 H 0.39 9.61 7.90 -40.82 -0.32 9.28 16 34 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.07 0.55 5.20 -51.92 -0.27 0.28 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 40 H 0.07 0.54 7.86 -51.93 -0.41 0.13 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.90 4.94 -51.93 -0.26 0.64 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.70 6.45 -51.93 -0.34 0.36 16 LS Contribution 348.56 15.07 5.25 5.25 Total: -1.00 -32.27 348.56 -7.54 -39.81 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.65 Total: 8.77 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 0.09 Total: 7.50 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: -0.23 Total: -44.50 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.97 Total: -32.61 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.27 -7.54 -39.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741016739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.613 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds