Wall clock time and date at job start Tue Mar 31 2020 05:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47245 * 2 1 4 4 O 1.21281 * 120.00110 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99814 * 179.97438 * 3 2 1 6 6 C 1.46502 * 119.99903 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.47109 * 35.00696 * 6 5 3 8 8 C 1.53003 * 109.47405 * 275.00427 * 6 5 3 9 9 C 1.50703 * 109.47135 * 155.00091 * 6 5 3 10 10 O 1.20824 * 119.99810 * 0.02562 * 9 6 5 11 11 O 1.34223 * 119.99916 * 180.02562 * 9 6 5 12 12 C 1.45200 * 116.99750 * 180.02562 * 11 9 6 13 13 C 1.53042 * 109.45876 * 270.06587 * 12 11 9 14 14 C 1.53191 * 109.31169 * 178.61283 * 13 12 11 15 15 N 1.46925 * 108.77543 * 54.63997 * 14 13 12 16 16 C 1.36944 * 120.63456 * 126.41165 * 15 14 13 17 17 H 1.08001 * 119.99682 * 331.82990 * 16 15 14 18 18 C 1.38801 * 120.00052 * 151.83012 * 16 15 14 19 19 N 1.31618 * 120.00562 * 343.07028 * 18 16 15 20 20 Si 1.86802 * 119.99892 * 163.07159 * 18 16 15 21 21 H 1.48504 * 109.47070 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47477 * 119.99933 * 20 18 16 23 23 H 1.48509 * 109.47110 * 239.99818 * 20 18 16 24 24 C 1.46927 * 118.74085 * 306.39437 * 15 14 13 25 25 C 1.53045 * 109.45926 * 150.00251 * 12 11 9 26 26 H 1.08996 * 109.47003 * 300.00315 * 1 2 3 27 27 H 1.09003 * 109.46908 * 59.99937 * 1 2 3 28 28 H 1.08999 * 109.47213 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47264 * 239.99502 * 2 1 3 30 30 H 1.09003 * 109.46908 * 120.00063 * 2 1 3 31 31 H 0.96994 * 120.00106 * 0.02562 * 5 3 2 32 32 H 1.08999 * 109.46844 * 299.99825 * 8 6 5 33 33 H 1.09002 * 109.46466 * 60.00067 * 8 6 5 34 34 H 1.08999 * 109.47017 * 179.97438 * 8 6 5 35 35 H 1.08996 * 109.46114 * 30.03032 * 12 11 9 36 36 H 1.08993 * 109.50161 * 298.56942 * 13 12 11 37 37 H 1.09003 * 109.49859 * 58.66938 * 13 12 11 38 38 H 1.08998 * 109.59192 * 294.85509 * 14 13 12 39 39 H 1.09001 * 109.70460 * 174.49314 * 14 13 12 40 40 H 0.96996 * 120.00487 * 180.02562 * 19 18 16 41 41 H 1.09010 * 109.58027 * 293.81906 * 24 15 14 42 42 H 1.08994 * 109.70720 * 173.46756 * 24 15 14 43 43 H 1.08993 * 109.49876 * 301.33745 * 25 12 11 44 44 H 1.09003 * 109.49817 * 61.40249 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6670 0.0005 6 6 3.8458 3.0482 0.0000 7 1 3.1731 3.6717 0.5888 8 6 3.8980 3.5702 -1.4373 9 6 5.2271 3.0929 0.6011 10 8 5.7500 2.0753 0.9896 11 8 5.8763 4.2631 0.7048 12 6 7.2033 4.2308 1.2934 13 6 7.0939 4.4209 2.8080 14 6 8.4924 4.3516 3.4295 15 7 9.3569 5.3324 2.7592 16 6 10.0514 6.2623 3.4860 17 1 9.6682 6.5999 4.4376 18 6 11.2478 6.7710 2.9996 19 7 11.8849 6.1445 2.0333 20 14 11.9537 8.3448 3.7167 21 1 11.0524 8.8508 4.7830 22 1 13.2950 8.0691 4.2912 23 1 12.0745 9.3662 2.6454 24 6 9.4626 5.2963 1.2942 25 6 8.0533 5.3548 0.6966 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9877 0.9298 0.0005 32 1 4.5708 2.9467 -2.0261 33 1 2.8989 3.5379 -1.8720 34 1 4.2609 4.5980 -1.4376 35 1 7.6714 3.2696 1.0810 36 1 6.6486 5.3925 3.0216 37 1 6.4692 3.6333 3.2294 38 1 8.9028 3.3508 3.2953 39 1 8.4338 4.5829 4.4931 40 1 12.7212 6.4997 1.6937 41 1 9.9521 4.3724 0.9859 42 1 10.0428 6.1508 0.9464 43 1 8.1113 5.2321 -0.3849 44 1 7.5986 6.3177 0.9295 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770776999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:20 Heat of formation + Delta-G solvation = -134.447556 kcal Electronic energy + Delta-G solvation = -24582.821395 eV Core-core repulsion = 20920.641910 eV Total energy + Delta-G solvation = -3662.179485 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.02848 -40.74278 -39.18925 -37.48711 -36.27037 -34.62834 -33.83997 -32.28608 -31.73591 -31.31566 -27.33237 -26.34438 -25.14736 -24.00326 -23.64908 -21.76895 -21.39959 -21.05986 -19.09059 -18.90312 -18.26056 -17.64428 -17.18394 -16.92184 -16.55757 -16.37226 -15.65990 -15.43194 -15.09810 -15.00837 -14.89377 -14.48968 -14.35031 -14.18718 -13.73442 -13.41154 -13.32221 -13.11999 -13.07693 -12.77588 -12.70664 -12.65249 -12.62316 -12.47909 -12.17406 -12.01276 -11.97042 -11.88587 -11.59415 -11.41126 -11.10939 -11.00245 -10.58393 -10.36907 -8.77291 -7.92007 -5.37882 0.97400 1.23530 1.46924 1.49198 1.59470 1.59719 2.21309 2.49539 3.23130 3.32721 3.58042 3.73612 3.76274 3.80711 3.91174 3.99647 4.12544 4.22972 4.29076 4.33771 4.54223 4.59069 4.66957 4.71719 4.77563 4.79693 4.84744 4.92894 5.01958 5.02474 5.08104 5.11856 5.19021 5.20185 5.36388 5.39312 5.43349 5.61354 5.66945 6.35103 6.38581 6.53248 7.10059 7.12407 7.78222 8.30698 9.15827 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.043563 B = 0.002654 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.590919 B =10547.785531 C =10693.052862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C 0.514 3.486 4 O -0.577 6.577 5 N -0.714 5.714 6 C 0.156 3.844 7 H 0.121 0.879 8 C -0.151 4.151 9 C 0.460 3.540 10 O -0.526 6.526 11 O -0.346 6.346 12 C 0.106 3.894 13 C -0.134 4.134 14 C 0.147 3.853 15 N -0.611 5.611 16 C -0.265 4.265 17 H 0.069 0.931 18 C -0.048 4.048 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.267 1.267 22 H -0.292 1.292 23 H -0.288 1.288 24 C 0.180 3.820 25 C -0.122 4.122 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.418 0.582 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.016 0.984 39 H 0.065 0.935 40 H 0.252 0.748 41 H 0.003 0.997 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.351 -11.000 -7.162 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.177 4.177 3 C 0.303 3.697 4 O -0.456 6.456 5 N -0.370 5.370 6 C 0.049 3.951 7 H 0.139 0.861 8 C -0.209 4.209 9 C 0.303 3.697 10 O -0.415 6.415 11 O -0.261 6.261 12 C 0.052 3.948 13 C -0.174 4.174 14 C 0.021 3.979 15 N -0.334 5.334 16 C -0.395 4.395 17 H 0.086 0.914 18 C -0.244 4.244 19 N -0.580 5.580 20 Si 0.797 3.203 21 H -0.191 1.191 22 H -0.220 1.220 23 H -0.214 1.214 24 C 0.054 3.946 25 C -0.161 4.161 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.139 0.861 30 H 0.132 0.868 31 H 0.256 0.744 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.034 0.966 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.021 0.979 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.560 -10.580 -7.073 23.336 hybrid contribution 1.325 0.393 0.479 1.463 sum -18.234 -10.188 -6.595 21.904 Atomic orbital electron populations 1.21547 0.93139 1.02758 1.02058 1.21713 0.98306 0.90872 1.06792 1.21540 0.80864 0.93383 0.73915 1.90703 1.55973 1.47976 1.50976 1.45948 1.08119 1.07316 1.75623 1.20356 0.88375 0.86643 0.99706 0.86095 1.22078 1.04004 1.02849 0.92002 1.24017 0.88743 0.81692 0.75269 1.90642 1.68375 1.35736 1.46726 1.86542 1.31843 1.34141 1.73608 1.22688 0.78740 1.00178 0.93182 1.22291 0.98869 1.02272 0.93937 1.20948 0.88923 0.91646 0.96380 1.44389 1.51946 1.35052 1.02055 1.19537 1.00544 1.15276 1.04106 0.91370 1.25819 0.96086 1.02524 0.99962 1.70161 1.16561 1.39551 1.31742 0.85191 0.77669 0.79614 0.77842 1.19136 1.21953 1.21441 1.20600 0.91729 0.99452 0.82847 1.22187 0.96085 0.97508 1.00296 0.93545 0.93100 0.89637 0.86096 0.86787 0.74442 0.91047 0.90303 0.89444 0.91101 0.91161 0.91167 0.96586 0.91664 0.93872 0.97924 0.91350 0.90130 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.20 71.98 0.66 -0.95 16 2 C -0.14 -1.42 6.42 29.85 0.19 -1.22 16 3 C 0.51 9.47 7.79 87.66 0.68 10.15 16 4 O -0.58 -15.08 15.64 -3.03 -0.05 -15.13 16 5 N -0.71 -12.71 4.95 -446.08 -2.21 -14.92 16 6 C 0.16 3.24 3.09 44.25 0.14 3.37 16 7 H 0.12 2.66 7.58 -2.39 -0.02 2.64 16 8 C -0.15 -2.61 9.42 71.98 0.68 -1.93 16 9 C 0.46 12.21 7.29 71.24 0.52 12.73 16 10 O -0.53 -16.05 15.06 21.97 0.33 -15.71 16 11 O -0.35 -10.24 9.78 -51.35 -0.50 -10.74 16 12 C 0.11 3.67 2.41 30.62 0.07 3.74 16 13 C -0.13 -4.74 5.72 30.67 0.18 -4.56 16 14 C 0.15 6.15 6.52 86.36 0.56 6.71 16 15 N -0.61 -30.50 2.99 -699.10 -2.09 -32.59 16 16 C -0.26 -14.38 9.58 84.03 0.81 -13.58 16 17 H 0.07 3.62 7.88 -2.91 -0.02 3.59 16 18 C -0.05 -2.66 4.92 84.86 0.42 -2.24 16 19 N -0.93 -54.31 11.19 21.65 0.24 -54.07 16 20 Si 0.97 44.19 29.59 68.60 2.03 46.22 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 24 C 0.18 8.50 5.30 86.36 0.46 8.96 16 25 C -0.12 -4.50 5.74 30.67 0.18 -4.33 16 26 H 0.05 0.69 8.10 -2.39 -0.02 0.67 16 27 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.42 6.38 7.79 -92.71 -0.72 5.66 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.47 8.11 -2.39 -0.02 1.45 16 35 H 0.07 2.60 7.16 -2.39 -0.02 2.58 16 36 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.06 2.64 7.93 -2.39 -0.02 2.62 16 40 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 41 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 42 H 0.07 3.63 6.06 -2.39 -0.01 3.61 16 43 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -67.59 360.53 3.56 -64.03 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.26 Total: 16.06 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 5.54 Total: 16.84 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -4.06 Total: -101.57 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -0.22 Total: -41.58 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -67.59 3.56 -64.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770776999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.415 kcal (2) G-P(sol) polarization free energy of solvation -67.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds