Wall clock time and date at job start Tue Mar 31 2020 05:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.05036 * 2 1 4 4 O 1.43887 * 109.90970 * 238.82187 * 2 1 3 5 5 C 1.44438 * 106.99079 * 214.25510 * 4 2 1 6 6 C 1.55106 * 103.55158 * 39.74505 * 5 4 2 7 7 C 1.53567 * 109.90584 * 121.17257 * 2 1 3 8 8 C 1.52479 * 110.46726 * 3.08091 * 7 2 1 9 9 N 1.47127 * 109.29318 * 181.81681 * 8 7 2 10 10 C 1.46908 * 110.99864 * 181.33247 * 9 8 7 11 11 C 1.50708 * 109.46775 * 170.08102 * 10 9 8 12 12 O 1.21277 * 119.99979 * 353.72061 * 11 10 9 13 13 N 1.34778 * 119.99539 * 173.72507 * 11 10 9 14 14 C 1.46500 * 119.99500 * 179.72355 * 13 11 10 15 15 C 1.50696 * 109.46866 * 180.27057 * 14 13 11 16 16 H 1.08002 * 120.00093 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00018 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00077 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00048 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46838 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46951 * 119.99685 * 19 17 15 22 22 H 1.48496 * 109.47092 * 239.99858 * 19 17 15 23 23 C 1.47022 * 110.69131 * 57.60205 * 9 8 7 24 24 C 1.53097 * 109.36067 * 300.91418 * 23 9 8 25 25 O 1.42317 * 110.59925 * 240.06017 * 7 2 1 26 26 H 1.08998 * 109.47306 * 298.82724 * 1 2 3 27 27 H 1.09001 * 109.46766 * 58.82809 * 1 2 3 28 28 H 1.08997 * 109.47212 * 178.82367 * 1 2 3 29 29 H 1.08998 * 110.60434 * 281.22405 * 5 4 2 30 30 H 1.09004 * 110.60656 * 158.26119 * 5 4 2 31 31 H 1.09002 * 110.92410 * 205.21111 * 6 5 4 32 32 H 1.08995 * 110.93256 * 81.54727 * 6 5 4 33 33 H 1.09007 * 109.50143 * 61.86895 * 8 7 2 34 34 H 1.09007 * 109.50104 * 301.76760 * 8 7 2 35 35 H 1.08994 * 109.47113 * 50.07934 * 10 9 8 36 36 H 1.08996 * 109.47003 * 290.07855 * 10 9 8 37 37 H 0.96993 * 119.99941 * 359.97438 * 13 11 10 38 38 H 1.08999 * 109.46987 * 300.27248 * 14 13 11 39 39 H 1.08999 * 109.47260 * 60.27092 * 14 13 11 40 40 H 0.96991 * 120.00137 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.48668 * 60.87643 * 23 9 8 42 42 H 1.08993 * 109.49161 * 180.92118 * 23 9 8 43 43 H 1.09000 * 109.51642 * 177.25550 * 24 23 9 44 44 H 1.09009 * 109.51297 * 297.36536 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 8 2.0200 -0.7004 -1.1575 5 6 3.2372 -1.3698 -0.7618 6 6 2.9190 -1.8897 0.6644 7 6 2.0529 -0.7474 1.2354 8 6 0.8932 -1.3240 2.0402 9 7 1.4196 -1.9957 3.2386 10 6 0.3336 -2.5936 4.0269 11 6 0.9186 -3.4721 5.1026 12 8 2.1131 -3.6797 5.1330 13 7 0.1142 -4.0270 6.0308 14 6 0.6821 -4.8859 7.0730 15 6 -0.4211 -5.3803 7.9727 16 1 -1.4430 -5.0847 7.7866 17 6 -0.1258 -6.2109 9.0329 18 7 1.1184 -6.5721 9.2587 19 14 -1.4934 -6.8244 10.1478 20 1 -2.7936 -6.2780 9.6829 21 1 -1.5367 -8.3082 10.1076 22 1 -1.2370 -6.3742 11.5394 23 6 2.2091 -1.0608 4.0536 24 6 3.3697 -0.5144 3.2179 25 8 2.8485 0.1138 2.0421 26 1 -0.3634 0.4955 0.9003 27 1 -0.3633 0.5319 -0.8793 28 1 -0.3633 -1.0274 -0.0211 29 1 4.0705 -0.6676 -0.7372 30 1 3.4540 -2.2005 -1.4335 31 1 3.8323 -2.0141 1.2462 32 1 2.3557 -2.8219 0.6224 33 1 0.3486 -2.0439 1.4291 34 1 0.2221 -0.5188 2.3395 35 1 -0.3018 -3.1923 3.3744 36 1 -0.2597 -1.8030 4.4861 37 1 -0.8410 -3.8606 6.0066 38 1 1.1823 -5.7365 6.6101 39 1 1.4024 -4.3165 7.6605 40 1 1.3260 -7.1567 10.0043 41 1 1.5747 -0.2360 4.3779 42 1 2.6026 -1.5819 4.9262 43 1 3.9281 0.2157 3.8038 44 1 4.0298 -1.3335 2.9320 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791591179.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:25 Heat of formation + Delta-G solvation = -112.128859 kcal Electronic energy + Delta-G solvation = -25189.986672 eV Core-core repulsion = 21528.774998 eV Total energy + Delta-G solvation = -3661.211674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.07890 -39.07556 -37.88812 -35.58137 -34.15695 -33.04925 -32.36732 -31.48535 -29.77966 -28.34925 -26.85304 -25.36798 -24.57826 -23.01354 -22.27789 -21.54108 -19.68398 -19.26968 -17.50851 -17.21306 -16.42637 -16.11112 -15.88148 -15.67777 -15.40535 -15.20012 -14.80023 -14.53860 -14.41244 -14.10229 -13.83501 -13.48147 -13.19684 -12.88774 -12.59831 -12.49707 -12.22492 -12.08559 -11.98182 -11.65866 -11.49118 -11.34604 -11.18551 -11.04071 -10.98077 -10.89812 -10.49298 -10.34712 -9.90133 -9.81524 -9.41515 -9.03580 -8.77025 -8.34302 -7.90602 -6.20133 -4.27122 3.20849 3.27874 3.30701 3.32429 3.38011 3.46464 3.62561 4.17544 4.29886 4.35937 4.49475 4.63278 4.87509 4.89640 4.97757 5.01978 5.08779 5.16046 5.18711 5.26651 5.28565 5.36019 5.40019 5.42284 5.48158 5.54216 5.57194 5.65450 5.77449 5.85031 5.88741 5.96481 5.98496 6.54991 6.78988 6.88285 7.08556 7.27947 7.40433 7.48031 7.63852 7.93527 8.59169 8.75345 9.07393 9.39821 10.90086 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.034282 B = 0.002828 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.549068 B = 9899.675285 C =10141.980789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.089 3.911 3 H 0.081 0.919 4 O -0.372 6.372 5 C 0.047 3.953 6 C -0.167 4.167 7 C 0.094 3.906 8 C 0.035 3.965 9 N -0.515 5.515 10 C 0.035 3.965 11 C 0.498 3.502 12 O -0.538 6.538 13 N -0.714 5.714 14 C 0.251 3.749 15 C -0.543 4.543 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.015 3.985 24 C 0.064 3.936 25 O -0.373 6.373 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.390 0.610 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.265 0.735 41 H 0.037 0.963 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 13.611 -17.439 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.031 3.969 3 H 0.099 0.901 4 O -0.291 6.291 5 C -0.030 4.030 6 C -0.205 4.205 7 C 0.054 3.946 8 C -0.093 4.093 9 N -0.239 5.239 10 C -0.096 4.096 11 C 0.282 3.718 12 O -0.416 6.416 13 N -0.364 5.364 14 C 0.131 3.869 15 C -0.582 4.582 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.113 4.113 24 C -0.012 4.012 25 O -0.292 6.292 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.222 0.778 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.862 13.137 -17.663 22.030 hybrid contribution -1.604 -0.013 1.355 2.099 sum -0.742 13.124 -16.308 20.947 Atomic orbital electron populations 1.22032 0.93043 1.03261 1.02719 1.22489 0.95068 0.96217 0.83133 0.90105 1.88929 1.40192 1.67620 1.32393 1.23596 0.87540 0.96344 0.95491 1.23560 1.01620 0.99072 0.96220 1.22349 0.90928 0.90180 0.91189 1.22840 0.95948 0.97900 0.92601 1.61873 1.22424 1.32904 1.06735 1.22044 0.93318 0.98280 0.95948 1.20251 0.87508 0.81449 0.82575 1.90639 1.15146 1.61425 1.74417 1.46470 1.10412 1.49718 1.29766 1.19088 0.94578 0.88942 0.84329 1.21261 0.93637 1.30749 1.12519 0.91878 1.24958 0.95862 0.95793 0.97422 1.69979 1.17742 1.34698 1.29829 0.86363 0.81636 0.78633 0.80293 1.19637 1.20765 1.20794 1.22906 0.95906 0.94458 0.98032 1.22754 0.95160 0.97955 0.85317 1.87870 1.67842 1.37612 1.35867 0.90815 0.91509 0.91313 0.91998 0.88802 0.89180 0.89137 0.89088 0.93448 0.88115 0.92402 0.77815 0.95535 0.95625 0.92476 0.94500 0.87540 0.88189 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.39 37.16 0.31 -0.95 16 2 C 0.09 0.91 3.88 -26.44 -0.10 0.81 16 3 H 0.08 0.84 7.96 -51.93 -0.41 0.43 16 4 O -0.37 -4.21 11.20 -35.23 -0.39 -4.60 16 5 C 0.05 0.45 7.73 38.27 0.30 0.75 16 6 C -0.17 -1.81 5.98 -24.93 -0.15 -1.96 16 7 C 0.09 1.04 0.99 -89.91 -0.09 0.95 16 8 C 0.04 0.39 3.02 -3.97 -0.01 0.37 16 9 N -0.51 -7.01 4.22 -236.03 -0.99 -8.00 16 10 C 0.04 0.49 5.45 -4.97 -0.03 0.46 16 11 C 0.50 9.52 7.39 -10.98 -0.08 9.44 16 12 O -0.54 -12.40 14.68 5.56 0.08 -12.32 16 13 N -0.71 -14.53 5.55 -61.47 -0.34 -14.88 16 14 C 0.25 6.54 5.43 -5.20 -0.03 6.51 16 15 C -0.54 -14.53 9.28 -34.44 -0.32 -14.85 16 16 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 19 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.01 0.20 5.29 -3.71 -0.02 0.18 16 24 C 0.06 0.77 6.73 37.21 0.25 1.02 16 25 O -0.37 -4.57 10.22 -35.23 -0.36 -4.93 16 26 H 0.07 0.54 6.78 -51.93 -0.35 0.19 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.55 6.75 -51.93 -0.35 0.20 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.02 6.21 -51.93 -0.32 0.70 16 32 H 0.09 1.02 7.78 -51.93 -0.40 0.62 16 33 H 0.09 0.92 6.81 -51.93 -0.35 0.56 16 34 H 0.05 0.49 6.59 -51.92 -0.34 0.14 16 35 H 0.10 1.19 8.05 -51.93 -0.42 0.77 16 36 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 37 H 0.39 6.74 8.32 -40.82 -0.34 6.40 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.11 1.74 6.10 -51.93 -0.32 1.42 16 43 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.07 0.82 6.40 -51.92 -0.33 0.49 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -32.06 343.79 -8.04 -40.10 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.86 Total: 4.56 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -0.07 Total: 4.38 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.60 Total: -47.98 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.67 Total: -21.85 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.06 -8.04 -40.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791591179.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.029 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds