Wall clock time and date at job start Tue Mar 31 2020 05:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.52184 * 2 1 4 4 C 1.53094 * 109.56618 * 239.85238 * 2 1 3 5 5 N 1.47016 * 109.37585 * 182.68730 * 4 2 1 6 6 C 1.46896 * 111.00134 * 182.83496 * 5 4 2 7 7 C 1.50709 * 109.47105 * 170.11162 * 6 5 4 8 8 O 1.21273 * 119.99695 * 353.71811 * 7 6 5 9 9 N 1.34770 * 119.99858 * 173.72077 * 7 6 5 10 10 C 1.46503 * 119.99870 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47250 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00058 * 359.72450 * 11 10 9 13 13 C 1.37880 * 120.00087 * 179.97438 * 11 10 9 14 14 N 1.31521 * 119.99844 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00156 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46874 * 90.00043 * 15 13 11 17 17 H 1.48497 * 109.47123 * 210.00321 * 15 13 11 18 18 H 1.48507 * 109.46856 * 330.00127 * 15 13 11 19 19 C 1.47135 * 110.67652 * 59.11476 * 5 4 2 20 20 C 1.52470 * 109.30877 * 302.43984 * 19 5 4 21 21 C 1.54311 * 110.02350 * 293.17583 * 20 19 5 22 22 C 1.55102 * 101.97344 * 220.68324 * 21 20 19 23 23 O 1.44429 * 103.55393 * 36.61562 * 22 21 20 24 24 C 1.43897 * 106.99770 * 320.27157 * 23 22 21 25 25 O 1.42311 * 110.82727 * 55.19879 * 20 19 5 26 26 H 1.09008 * 109.47182 * 299.88911 * 1 2 3 27 27 H 1.09003 * 109.46578 * 59.88595 * 1 2 3 28 28 H 1.08991 * 109.47667 * 179.88875 * 1 2 3 29 29 H 1.09003 * 109.48614 * 62.71266 * 4 2 1 30 30 H 1.09007 * 109.49102 * 302.65859 * 4 2 1 31 31 H 1.08998 * 109.47277 * 50.11588 * 6 5 4 32 32 H 1.08998 * 109.47852 * 290.10761 * 6 5 4 33 33 H 0.96999 * 120.00324 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.47149 * 59.99810 * 10 9 7 35 35 H 1.09000 * 109.47267 * 299.99972 * 10 9 7 36 36 H 0.96997 * 119.99467 * 179.97438 * 14 13 11 37 37 H 1.09006 * 109.49452 * 62.38837 * 19 5 4 38 38 H 1.08999 * 109.50024 * 182.45426 * 19 5 4 39 39 H 1.09006 * 110.93030 * 338.85377 * 21 20 19 40 40 H 1.09006 * 110.93018 * 102.50988 * 21 20 19 41 41 H 1.09004 * 110.60217 * 278.10295 * 22 21 20 42 42 H 1.08995 * 110.60928 * 155.13568 * 22 21 20 43 43 H 1.08997 * 109.90031 * 266.98721 * 24 23 22 44 44 H 1.09001 * 110.05860 * 145.81412 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0427 -0.7245 -1.2474 5 7 3.5114 -0.7785 -1.2110 6 6 4.0454 -1.4081 -2.4260 7 6 5.5413 -1.2299 -2.4683 8 8 6.0936 -0.5411 -1.6369 9 7 6.2651 -1.8359 -3.4301 10 6 7.7192 -1.6622 -3.4716 11 6 8.2848 -2.4371 -4.6338 12 1 7.6274 -3.0061 -5.2745 13 6 9.6421 -2.4239 -4.8760 14 7 10.4432 -1.7355 -4.0925 15 14 10.3433 -3.3851 -6.3162 16 1 10.3710 -2.5194 -7.5224 17 1 11.7235 -3.8264 -5.9917 18 1 9.4925 -4.5736 -6.5792 19 6 3.9756 -1.4820 -0.0050 20 6 3.4261 -0.7794 1.2315 21 6 4.0540 0.6239 1.3646 22 6 4.3075 0.7195 2.8918 23 8 4.6951 -0.6235 3.2553 24 6 3.8562 -1.5208 2.5059 25 8 2.0082 -0.6770 1.1671 26 1 -0.3634 0.5121 0.8910 27 1 -0.3632 0.5156 -0.8890 28 1 -0.3634 -1.0275 -0.0020 29 1 1.7206 -0.1861 -2.1388 30 1 1.6420 -1.7380 -1.2699 31 1 3.5989 -0.9408 -3.3037 32 1 3.8063 -2.4716 -2.4194 33 1 5.8233 -2.3865 -4.0953 34 1 8.1557 -2.0294 -2.5427 35 1 7.9556 -0.6049 -3.5909 36 1 11.3981 -1.7265 -4.2627 37 1 3.6208 -2.5125 -0.0257 38 1 5.0652 -1.4730 0.0248 39 1 4.9903 0.6858 0.8098 40 1 3.3570 1.3951 1.0365 41 1 3.3963 1.0105 3.4144 42 1 5.1135 1.4220 3.1037 43 1 2.9784 -1.7868 3.0947 44 1 4.4126 -2.4203 2.2421 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796557553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:40 Heat of formation + Delta-G solvation = -142.962297 kcal Electronic energy + Delta-G solvation = -25323.345093 eV Core-core repulsion = 21660.796381 eV Total energy + Delta-G solvation = -3662.548712 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.87981 -40.44479 -39.04233 -36.73717 -35.98465 -34.35563 -34.14369 -31.81169 -30.74042 -29.82324 -28.21466 -27.38841 -25.08115 -24.01246 -23.48108 -22.77855 -21.32645 -20.46836 -18.97123 -18.22072 -17.71981 -17.41949 -17.31916 -16.89004 -16.58127 -16.16502 -16.02681 -15.96010 -15.71898 -15.16644 -14.89834 -14.50774 -14.27860 -14.09664 -13.96609 -13.84037 -13.47884 -13.17757 -12.97006 -12.93003 -12.79650 -12.70093 -12.65327 -12.48814 -12.23390 -12.09232 -11.83853 -11.49199 -11.44522 -10.86239 -10.80399 -10.74669 -10.47287 -9.80704 -9.39824 -8.29665 -6.46392 1.42579 1.44995 1.56111 1.79217 2.21474 2.40745 2.48064 2.82270 2.92369 3.05278 3.46087 3.61742 3.80896 3.84820 3.97039 4.00403 4.14034 4.21897 4.29789 4.30559 4.35453 4.42530 4.50837 4.57620 4.64804 4.69008 4.72700 4.74947 4.85333 4.99932 5.04976 5.10971 5.14130 5.24295 5.30463 5.48717 5.66210 5.68905 5.76831 5.85139 5.92138 6.22120 6.65120 6.94811 7.23450 7.53150 8.82467 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.022309 B = 0.003320 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.824232 B = 8432.073648 C = 9296.038792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.081 3.919 3 H 0.065 0.935 4 C 0.024 3.976 5 N -0.532 5.532 6 C 0.049 3.951 7 C 0.493 3.507 8 O -0.581 6.581 9 N -0.710 5.710 10 C 0.269 3.731 11 C -0.556 4.556 12 H 0.084 0.916 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.985 3.015 16 H -0.270 1.270 17 H -0.285 1.285 18 H -0.255 1.255 19 C 0.039 3.961 20 C 0.099 3.901 21 C -0.163 4.163 22 C 0.047 3.953 23 O -0.396 6.396 24 C 0.061 3.939 25 O -0.374 6.374 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.053 0.947 31 H 0.134 0.866 32 H 0.085 0.915 33 H 0.408 0.592 34 H -0.015 1.015 35 H -0.014 1.014 36 H 0.268 0.732 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.881 1.125 6.815 23.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.024 3.976 3 H 0.083 0.917 4 C -0.103 4.103 5 N -0.257 5.257 6 C -0.081 4.081 7 C 0.279 3.721 8 O -0.461 6.461 9 N -0.361 5.361 10 C 0.146 3.854 11 C -0.593 4.593 12 H 0.102 0.898 13 C -0.197 4.197 14 N -0.570 5.570 15 Si 0.808 3.192 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.179 1.179 19 C -0.090 4.090 20 C 0.058 3.942 21 C -0.200 4.200 22 C -0.029 4.029 23 O -0.315 6.315 24 C -0.016 4.016 25 O -0.294 6.294 26 H 0.086 0.914 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.128 0.872 30 H 0.071 0.929 31 H 0.152 0.848 32 H 0.102 0.898 33 H 0.243 0.757 34 H 0.003 0.997 35 H 0.004 0.996 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.119 0.881 43 H 0.104 0.896 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.092 2.003 7.734 23.492 hybrid contribution 0.757 -1.077 -1.168 1.760 sum -21.334 0.926 6.566 22.341 Atomic orbital electron populations 1.21732 0.90211 1.03471 1.03863 1.22449 0.96308 0.95550 0.83304 0.91684 1.22973 0.85511 1.01195 1.00636 1.61805 1.09658 1.53430 1.00819 1.21989 0.90027 1.00617 0.95500 1.21319 0.90754 0.79188 0.80816 1.90631 1.73996 1.40862 1.40652 1.46186 1.08679 1.50327 1.30885 1.18482 0.76482 0.94735 0.95653 1.21628 0.93539 1.31143 1.13038 0.89772 1.26079 0.97299 0.96389 0.99907 1.70146 1.04821 1.42097 1.39932 0.85160 0.77423 0.78796 0.77855 1.19560 1.21076 1.17855 1.22634 1.00961 0.95361 0.90008 1.22224 0.81895 0.95270 0.94794 1.23464 1.02050 0.97351 0.97172 1.23728 1.01458 0.84255 0.93417 1.88899 1.59797 1.17149 1.65698 1.23063 0.95302 0.93100 0.90100 1.87873 1.19034 1.78584 1.43863 0.91369 0.88720 0.91626 0.87247 0.92917 0.84825 0.89763 0.75683 0.99747 0.99635 0.92288 0.93605 0.91134 0.91537 0.88816 0.90299 0.88115 0.89622 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.57 71.98 0.69 -0.90 16 2 C 0.08 1.47 3.15 30.63 0.10 1.56 16 3 H 0.07 1.26 6.40 -2.39 -0.02 1.24 16 4 C 0.02 0.44 4.91 86.31 0.42 0.86 16 5 N -0.53 -13.89 4.22 -900.70 -3.80 -17.69 16 6 C 0.05 1.26 5.45 85.56 0.47 1.72 16 7 C 0.49 19.17 7.41 87.66 0.65 19.82 16 8 O -0.58 -28.32 14.67 -3.01 -0.04 -28.36 16 9 N -0.71 -29.34 5.55 -466.79 -2.59 -31.93 16 10 C 0.27 14.77 5.43 85.63 0.46 15.24 16 11 C -0.56 -30.09 9.28 25.60 0.24 -29.86 16 12 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 13 C 0.00 0.16 5.46 84.65 0.46 0.62 16 14 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 15 Si 0.98 42.19 29.54 68.60 2.03 44.21 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 17 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 19 C 0.04 1.11 3.65 86.08 0.31 1.42 16 20 C 0.10 2.53 0.99 -10.33 -0.01 2.52 16 21 C -0.16 -4.35 5.98 31.76 0.19 -4.16 16 22 C 0.05 1.13 7.73 72.70 0.56 1.70 16 23 O -0.40 -11.43 11.53 -148.98 -1.72 -13.14 16 24 C 0.06 1.54 7.19 72.18 0.52 2.06 16 25 O -0.37 -8.51 9.86 -148.98 -1.47 -9.98 16 26 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.11 1.51 8.08 -2.39 -0.02 1.49 16 30 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.13 2.61 8.03 -2.39 -0.02 2.59 16 32 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16 33 H 0.41 13.67 8.32 -92.71 -0.77 12.90 16 34 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 35 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 36 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.07 2.60 6.02 -2.39 -0.01 2.59 16 39 H 0.07 2.26 7.78 -2.38 -0.02 2.24 16 40 H 0.09 2.25 6.21 -2.38 -0.01 2.23 16 41 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.09 1.89 7.96 -2.39 -0.02 1.87 16 44 H 0.10 2.32 7.68 -2.39 -0.02 2.30 16 Total: -1.00 -73.93 349.96 -2.02 -75.95 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.22 Total: 24.50 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 5.06 Total: 12.61 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -6.11 Total: -105.79 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -3.23 Total: -51.48 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -73.93 -2.02 -75.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796557553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.012 kcal (2) G-P(sol) polarization free energy of solvation -73.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds