Wall clock time and date at job start Tue Mar 31 2020 05:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46811 * 2 1 4 4 C 1.52994 * 109.46979 * 119.99762 * 2 1 3 5 5 C 1.53007 * 109.46979 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47047 * 300.00106 * 5 4 2 7 7 C 1.52997 * 109.46982 * 59.99964 * 6 5 4 8 8 C 1.52995 * 109.47047 * 239.99868 * 2 1 3 9 9 H 1.08999 * 109.47491 * 59.99935 * 8 2 1 10 10 N 1.46498 * 109.47451 * 299.99978 * 8 2 1 11 11 C 1.34776 * 120.00400 * 155.00241 * 10 8 2 12 12 O 1.21283 * 119.99613 * 359.97438 * 11 10 8 13 13 C 1.50699 * 119.99945 * 179.97438 * 11 10 8 14 14 N 1.46505 * 109.46687 * 185.21395 * 13 11 10 15 15 C 1.36936 * 119.99657 * 95.47605 * 14 13 11 16 16 H 1.07998 * 120.00283 * 221.06635 * 15 14 13 17 17 C 1.38816 * 119.99851 * 41.07103 * 15 14 13 18 18 N 1.31627 * 119.99577 * 209.62578 * 17 15 14 19 19 Si 1.86794 * 120.00378 * 29.62257 * 17 15 14 20 20 H 1.48500 * 109.47028 * 95.02800 * 19 17 15 21 21 H 1.48505 * 109.47077 * 335.02730 * 19 17 15 22 22 H 1.48495 * 109.47306 * 215.02796 * 19 17 15 23 23 C 1.46500 * 120.00269 * 275.46913 * 14 13 11 24 24 C 1.50695 * 109.47252 * 270.00405 * 23 14 13 25 25 O 1.20817 * 120.00400 * 0.02562 * 24 23 14 26 26 O 1.34229 * 119.99514 * 180.02562 * 24 23 14 27 27 H 1.09004 * 109.46811 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47379 * 299.99772 * 1 2 3 29 29 H 1.08999 * 109.47028 * 60.00481 * 1 2 3 30 30 H 1.09000 * 109.47625 * 60.00392 * 4 2 1 31 31 H 1.09002 * 109.47715 * 300.00111 * 4 2 1 32 32 H 1.08999 * 109.47028 * 179.97438 * 5 4 2 33 33 H 1.09004 * 109.46811 * 60.00238 * 5 4 2 34 34 H 1.09000 * 109.47141 * 299.99353 * 6 5 4 35 35 H 1.08996 * 109.46882 * 179.97438 * 6 5 4 36 36 H 1.09009 * 109.47081 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47565 * 60.00247 * 7 6 5 38 38 H 0.97003 * 119.99496 * 334.99767 * 10 8 2 39 39 H 1.09005 * 109.47111 * 65.21972 * 13 11 10 40 40 H 1.09000 * 109.47381 * 305.21859 * 13 11 10 41 41 H 0.96998 * 119.99623 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.46872 * 30.00608 * 23 14 13 43 43 H 1.09004 * 109.46544 * 150.00275 * 23 14 13 44 44 H 0.96706 * 117.00062 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5701 -0.7217 1.2489 6 6 4.0795 -1.4434 -0.0003 7 6 3.5695 -0.7221 -1.2495 8 6 2.0400 -0.7213 -1.2492 9 1 1.6767 -0.2075 -2.1392 10 7 1.5517 -2.1025 -1.2492 11 6 1.4231 -2.7718 -2.4119 12 8 1.7111 -2.2304 -3.4583 13 6 0.9213 -4.1928 -2.4118 14 7 0.9894 -4.7348 -3.7712 15 6 2.0750 -5.4732 -4.1602 16 1 2.4987 -5.3337 -5.1437 17 6 2.6308 -6.4014 -3.2904 18 7 3.9158 -6.6787 -3.3571 19 14 1.5553 -7.2567 -2.0251 20 1 1.1006 -8.5635 -2.5643 21 1 0.3747 -6.4076 -1.7238 22 1 2.3355 -7.4789 -0.7813 23 6 -0.1039 -4.4868 -4.7143 24 6 -1.1271 -5.5869 -4.5977 25 8 -0.9607 -6.4856 -3.8075 26 8 -2.2236 -5.5683 -5.3717 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6768 -1.7489 1.2493 31 1 1.6767 -0.2074 2.1393 32 1 3.9334 -1.2351 2.1391 33 1 3.9337 0.3059 1.2487 34 1 3.7159 -2.4709 0.0000 35 1 5.1695 -1.4433 -0.0007 36 1 3.9328 -1.2360 -2.1395 37 1 3.9332 0.3054 -1.2498 38 1 1.3211 -2.5353 -0.4123 39 1 -0.1115 -4.2134 -2.0638 40 1 1.5404 -4.7967 -1.7484 41 1 4.3043 -7.3269 -2.7491 42 1 -0.5717 -3.5295 -4.4846 43 1 0.2909 -4.4639 -5.7301 44 1 -2.8518 -6.2952 -5.2607 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828252373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:12 Heat of formation + Delta-G solvation = -115.534915 kcal Electronic energy + Delta-G solvation = -25897.828187 eV Core-core repulsion = 22236.468815 eV Total energy + Delta-G solvation = -3661.359372 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.99702 -39.36532 -37.84582 -35.71581 -34.83540 -33.26889 -32.46042 -31.76063 -30.11038 -28.38194 -26.72704 -25.93813 -22.96625 -22.41320 -21.38458 -20.82182 -19.95938 -18.79134 -17.55578 -17.20318 -16.55609 -15.72769 -15.45480 -15.25354 -15.04831 -14.87866 -14.67684 -14.03675 -13.99099 -13.74699 -13.30780 -13.08101 -12.78246 -12.65957 -12.41351 -12.26785 -12.07542 -11.89888 -11.65682 -11.55114 -11.27695 -10.93212 -10.89343 -10.67934 -10.53653 -10.51106 -10.40738 -10.23291 -10.12228 -9.93516 -9.39675 -9.01620 -8.53521 -8.48946 -7.00003 -6.12365 -3.54689 3.04998 3.38086 3.42756 3.55637 3.60365 3.73066 3.92242 4.53590 4.61713 4.68993 4.75703 4.88208 5.09497 5.22343 5.27760 5.40093 5.41929 5.48744 5.56800 5.61839 5.69031 5.77678 5.82257 5.93928 5.97311 5.99810 6.02201 6.07214 6.11278 6.21255 6.23886 6.26628 6.32925 6.42246 6.47011 6.50059 7.02209 7.18681 7.82548 8.08945 8.26318 8.67505 8.81889 9.02478 9.58319 9.92471 11.00618 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.015646 B = 0.005368 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.213482 B = 5214.805063 C = 6047.566120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.079 0.921 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.130 4.130 8 C 0.153 3.847 9 H 0.083 0.917 10 N -0.735 5.735 11 C 0.489 3.511 12 O -0.525 6.525 13 C 0.133 3.867 14 N -0.547 5.547 15 C -0.283 4.283 16 H 0.081 0.919 17 C 0.051 3.949 18 N -0.876 5.876 19 Si 0.875 3.125 20 H -0.289 1.289 21 H -0.252 1.252 22 H -0.306 1.306 23 C 0.159 3.841 24 C 0.434 3.566 25 O -0.505 6.505 26 O -0.536 6.536 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.392 0.608 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.265 0.735 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.876 12.564 8.679 16.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.097 0.903 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.169 4.169 8 C 0.048 3.952 9 H 0.101 0.899 10 N -0.391 5.391 11 C 0.275 3.725 12 O -0.399 6.399 13 C 0.003 3.997 14 N -0.265 5.265 15 C -0.411 4.411 16 H 0.098 0.902 17 C -0.153 4.153 18 N -0.514 5.514 19 Si 0.704 3.296 20 H -0.216 1.216 21 H -0.176 1.176 22 H -0.234 1.234 23 C 0.030 3.970 24 C 0.273 3.727 25 O -0.391 6.391 26 O -0.347 6.347 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.226 0.774 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.117 0.883 44 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -6.146 12.911 8.095 16.431 hybrid contribution -0.943 -1.520 1.252 2.183 sum -7.089 11.391 9.346 16.351 Atomic orbital electron populations 1.21810 0.94921 1.02193 1.01410 1.21406 0.95866 0.99697 0.94699 0.90299 1.21599 0.95855 1.00624 0.97210 1.21544 0.95353 1.00571 0.98113 1.21486 1.00107 1.00039 0.94020 1.21897 0.95647 1.00470 0.98887 1.20792 0.93370 0.83316 0.97739 0.89932 1.46371 1.69198 1.14017 1.09519 1.22620 0.77132 0.89682 0.83104 1.90599 1.48600 1.69096 1.31598 1.21269 0.99619 0.89475 0.89373 1.43422 1.16693 1.57180 1.09183 1.18643 1.03172 1.15643 1.03645 0.90171 1.25597 0.95157 0.96332 0.98216 1.70014 1.10076 1.32957 1.38324 0.86956 0.81478 0.81628 0.79570 1.21629 1.17589 1.23396 1.20888 0.85976 0.92258 0.97907 1.26623 0.80469 0.88908 0.76657 1.90612 1.75517 1.36756 1.36192 1.84700 1.33869 1.52849 1.63315 0.92369 0.92900 0.92622 0.91976 0.92002 0.92232 0.92228 0.91533 0.92251 0.90904 0.91883 0.77388 0.91548 0.89658 0.92528 0.89835 0.88346 0.75484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.04 37.16 0.34 -1.04 16 2 C -0.10 -0.97 2.51 -90.62 -0.23 -1.20 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.12 -1.07 5.03 -26.73 -0.13 -1.21 16 5 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 6 C -0.12 -1.49 5.76 -26.74 -0.15 -1.64 16 7 C -0.13 -1.77 5.60 -26.76 -0.15 -1.92 16 8 C 0.15 2.02 2.23 -67.96 -0.15 1.87 16 9 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 10 N -0.74 -10.94 3.54 -53.84 -0.19 -11.13 16 11 C 0.49 9.50 7.85 -10.99 -0.09 9.42 16 12 O -0.52 -11.95 16.00 5.56 0.09 -11.87 16 13 C 0.13 2.77 4.29 -5.19 -0.02 2.75 16 14 N -0.55 -12.91 1.00 -175.98 -0.18 -13.09 16 15 C -0.28 -7.91 9.79 -15.06 -0.15 -8.06 16 16 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 17 C 0.05 1.46 5.06 -17.43 -0.09 1.37 16 18 N -0.88 -26.45 13.97 55.49 0.78 -25.68 16 19 Si 0.88 22.66 24.21 -169.99 -4.12 18.55 16 20 H -0.29 -7.96 7.11 56.52 0.40 -7.55 16 21 H -0.25 -6.18 5.22 56.52 0.30 -5.88 16 22 H -0.31 -7.79 7.11 56.52 0.40 -7.39 16 23 C 0.16 3.19 6.16 -5.20 -0.03 3.16 16 24 C 0.43 8.52 8.40 36.00 0.30 8.82 16 25 O -0.50 -11.74 14.34 -18.74 -0.27 -12.01 16 26 O -0.54 -8.32 13.42 -39.26 -0.53 -8.84 16 27 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.60 6.51 -51.93 -0.34 0.26 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.95 7.60 -51.93 -0.39 0.55 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.39 5.03 6.65 -40.82 -0.27 4.76 16 39 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 40 H 0.09 1.89 4.80 -51.93 -0.25 1.64 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.08 1.48 8.07 -51.93 -0.42 1.06 16 43 H 0.10 1.93 8.04 -51.93 -0.42 1.51 16 44 H 0.39 4.40 9.10 45.56 0.41 4.82 16 LS Contribution 347.09 15.07 5.23 5.23 Total: -1.00 -34.53 347.09 -6.24 -40.78 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.34 Total: 7.06 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -0.71 Total: 10.99 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.41 Total: -49.89 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.71 Total: -32.72 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.12 Total: 18.55 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.53 -6.24 -40.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828252373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.758 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds