Wall clock time and date at job start Tue Mar 31 2020 03:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47208 * 2 1 4 4 H 1.09003 * 109.46776 * 55.00256 * 3 2 1 5 5 O 1.42898 * 109.47286 * 295.00076 * 3 2 1 6 6 C 1.53005 * 109.46848 * 175.00141 * 3 2 1 7 7 H 1.09004 * 109.46668 * 304.99572 * 6 3 2 8 8 C 1.52996 * 109.47194 * 65.00243 * 6 3 2 9 9 C 1.50700 * 109.46589 * 185.00463 * 6 3 2 10 10 O 1.21281 * 120.00330 * 352.52895 * 9 6 3 11 11 N 1.34782 * 119.99910 * 172.53698 * 9 6 3 12 12 C 1.46961 * 120.59083 * 5.35473 * 11 9 6 13 13 C 1.53378 * 108.63348 * 235.20484 * 12 11 9 14 14 N 1.46967 * 108.63315 * 310.57512 * 13 12 11 15 15 C 1.34773 * 120.59562 * 235.20325 * 14 13 12 16 16 O 1.21684 * 119.99851 * 355.41870 * 15 14 13 17 17 C 1.46374 * 120.00320 * 175.41713 * 15 14 13 18 18 H 1.08004 * 119.99489 * 14.82404 * 17 15 14 19 19 C 1.40043 * 120.00387 * 194.82996 * 17 15 14 20 20 N 1.30671 * 120.00005 * 182.33739 * 19 17 15 21 21 Si 1.86803 * 119.99939 * 2.33149 * 19 17 15 22 22 H 1.48503 * 109.47200 * 274.45041 * 21 19 17 23 23 H 1.48501 * 109.47008 * 34.44845 * 21 19 17 24 24 H 1.48491 * 109.47161 * 154.45250 * 21 19 17 25 25 C 1.46971 * 118.81078 * 55.47650 * 14 13 12 26 26 C 1.46961 * 120.59290 * 185.33140 * 11 9 6 27 27 H 1.09002 * 109.46800 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46896 * 299.99956 * 1 2 3 29 29 H 1.08997 * 109.46762 * 60.00273 * 1 2 3 30 30 H 1.09007 * 109.46745 * 239.99878 * 2 1 3 31 31 H 1.09003 * 109.46821 * 120.00202 * 2 1 3 32 32 H 0.96701 * 113.99524 * 300.00183 * 5 3 2 33 33 H 1.08998 * 109.47365 * 62.43020 * 8 6 3 34 34 H 1.09007 * 109.46652 * 182.43436 * 8 6 3 35 35 H 1.08997 * 109.47301 * 302.43123 * 8 6 3 36 36 H 1.08997 * 109.61224 * 115.45923 * 12 11 9 37 37 H 1.09003 * 109.61345 * 354.94472 * 12 11 9 38 38 H 1.08998 * 109.60999 * 190.83613 * 13 12 11 39 39 H 1.09000 * 109.60759 * 70.31795 * 13 12 11 40 40 H 0.97003 * 120.00007 * 179.97438 * 20 19 17 41 41 H 1.09006 * 109.60623 * 64.26630 * 25 14 13 42 42 H 1.08997 * 109.61025 * 184.77348 * 25 14 13 43 43 H 1.09007 * 109.60598 * 244.53830 * 26 11 9 44 44 H 1.08994 * 109.61236 * 5.04632 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6620 2.0814 -1.2210 6 6 3.5649 1.4442 0.1257 7 1 3.8571 0.8799 1.0114 8 6 4.1799 0.7975 -1.1171 9 6 4.0570 2.8632 0.2493 10 8 3.2857 3.7876 0.1027 11 7 5.3545 3.1051 0.5227 12 6 6.3235 2.0022 0.5871 13 6 7.0288 2.0482 1.9483 14 7 7.4999 3.4198 2.1869 15 6 8.7972 3.6617 2.4603 16 8 9.5740 2.7345 2.5938 17 6 9.2720 5.0395 2.5966 18 1 8.5631 5.8453 2.7180 19 6 10.6452 5.3130 2.5695 20 7 11.0710 6.5370 2.7368 21 14 11.8681 3.9280 2.2942 22 1 12.1797 3.2775 3.5922 23 1 11.2818 2.9270 1.3670 24 1 13.1148 4.4785 1.7045 25 6 6.5297 4.5222 2.1280 26 6 5.8255 4.4766 0.7613 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 2.0142 1.6542 -2.0138 33 1 3.9234 1.3864 -1.9977 34 1 5.2638 0.7597 -1.0083 35 1 3.7905 -0.2142 -1.2306 36 1 7.0587 2.1141 -0.2098 37 1 5.8029 1.0508 0.4769 38 1 7.8784 1.3654 1.9434 39 1 6.3290 1.7601 2.7328 40 1 12.0222 6.7264 2.7184 41 1 5.7953 4.4061 2.9250 42 1 7.0495 5.4734 2.2419 43 1 6.5252 4.7648 -0.0233 44 1 4.9760 5.1595 0.7661 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901076609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:34 Heat of formation + Delta-G solvation = -148.769222 kcal Electronic energy + Delta-G solvation = -25464.600693 eV Core-core repulsion = 21801.800174 eV Total energy + Delta-G solvation = -3662.800519 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.64782 -40.22454 -38.77902 -37.62090 -35.13432 -35.01081 -34.01073 -33.13428 -32.11593 -29.37672 -28.05188 -27.36793 -25.29780 -24.57694 -23.30690 -21.96672 -21.16560 -19.94200 -18.75257 -18.22843 -17.66215 -17.62921 -16.96027 -16.65851 -16.61214 -16.14260 -16.06582 -15.68161 -15.41077 -15.09383 -14.64348 -14.53448 -14.31127 -14.10717 -13.90648 -13.59441 -13.33425 -13.16318 -12.98040 -12.85394 -12.78755 -12.48598 -12.47210 -12.37924 -12.29059 -12.17087 -11.72760 -11.57072 -11.48149 -11.22483 -10.91825 -10.53062 -10.07956 -9.96473 -9.14154 -8.78112 -7.02137 1.33192 1.39856 1.63944 1.64828 1.87839 2.08744 2.35304 2.65872 3.28915 3.34816 3.54037 3.72540 3.88134 3.89970 4.02160 4.13996 4.18951 4.23055 4.28078 4.30070 4.41795 4.52462 4.62923 4.64676 4.70133 4.79443 4.84550 4.86088 4.88903 4.99839 5.03286 5.12677 5.13526 5.21994 5.39840 5.43958 5.44714 5.65935 5.92840 6.19447 6.41636 6.60870 6.92284 7.06541 7.18441 7.94148 8.26973 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.034582 B = 0.003443 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.477962 B = 8129.473924 C = 8522.062824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.148 4.148 3 C 0.128 3.872 4 H 0.075 0.925 5 O -0.567 6.567 6 C -0.139 4.139 7 H 0.125 0.875 8 C -0.158 4.158 9 C 0.514 3.486 10 O -0.570 6.570 11 N -0.610 5.610 12 C 0.097 3.903 13 C 0.098 3.902 14 N -0.632 5.632 15 C 0.552 3.448 16 O -0.637 6.637 17 C -0.551 4.551 18 H 0.083 0.917 19 C 0.066 3.934 20 N -0.853 5.853 21 Si 1.011 2.989 22 H -0.291 1.291 23 H -0.271 1.271 24 H -0.305 1.305 25 C 0.111 3.889 26 C 0.106 3.894 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.377 0.623 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.138 0.862 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.291 0.709 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.698 -15.127 -7.766 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C 0.068 3.932 4 H 0.093 0.907 5 O -0.374 6.374 6 C -0.160 4.160 7 H 0.143 0.857 8 C -0.215 4.215 9 C 0.304 3.696 10 O -0.449 6.449 11 N -0.343 5.343 12 C -0.026 4.026 13 C -0.025 4.025 14 N -0.365 5.365 15 C 0.360 3.640 16 O -0.531 6.531 17 C -0.588 4.588 18 H 0.101 0.899 19 C -0.150 4.150 20 N -0.484 5.484 21 Si 0.843 3.157 22 H -0.218 1.218 23 H -0.198 1.198 24 H -0.236 1.236 25 C -0.013 4.013 26 C -0.018 4.018 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.226 0.774 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.155 0.845 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.110 0.890 43 H 0.082 0.918 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.959 -14.515 -7.348 23.501 hybrid contribution 1.087 -0.005 -0.033 1.087 sum -15.872 -14.520 -7.381 22.743 Atomic orbital electron populations 1.21704 0.95535 1.01928 1.01607 1.22245 0.96741 0.95091 1.04464 1.21685 0.90260 0.93680 0.87529 0.90705 1.86686 1.76638 1.58052 1.15991 1.22146 0.98319 0.91885 1.03637 0.85679 1.22097 1.02233 1.02159 0.95034 1.21270 0.80735 0.92642 0.74994 1.90708 1.55500 1.47578 1.51091 1.48165 1.08288 1.07923 1.69927 1.22499 0.91828 0.91281 0.96997 1.21909 0.99195 0.84526 0.96916 1.47611 1.07566 1.07280 1.74078 1.18207 0.80704 0.89533 0.75550 1.90219 1.54175 1.47634 1.61061 1.21017 0.93443 0.92206 1.52094 0.89943 1.26315 1.00747 0.98237 0.89660 1.69557 1.18099 1.21649 1.39139 0.84614 0.74285 0.77605 0.79199 1.21770 1.19761 1.23572 1.22010 0.91062 0.91922 0.96300 1.21920 0.98918 0.84280 0.96714 0.91439 0.93634 0.93128 0.89386 0.89499 0.77371 0.92230 0.90372 0.87987 0.91360 0.84472 0.89532 0.90979 0.89876 0.91776 0.88986 0.91797 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.81 71.98 0.71 -1.16 16 2 C -0.15 -1.55 5.24 30.60 0.16 -1.39 16 3 C 0.13 2.23 2.28 30.60 0.07 2.30 16 4 H 0.07 1.69 8.07 -2.39 -0.02 1.67 16 5 O -0.57 -12.16 11.84 -132.75 -1.57 -13.73 16 6 C -0.14 -2.21 1.73 -11.54 -0.02 -2.23 16 7 H 0.13 1.47 7.58 -2.39 -0.02 1.45 16 8 C -0.16 -1.68 8.07 71.98 0.58 -1.10 16 9 C 0.51 13.50 6.94 87.66 0.61 14.11 16 10 O -0.57 -19.99 14.77 13.20 0.19 -19.79 16 11 N -0.61 -16.35 2.95 -817.15 -2.41 -18.76 16 12 C 0.10 2.23 5.41 86.42 0.47 2.70 16 13 C 0.10 2.98 6.58 86.42 0.57 3.55 16 14 N -0.63 -25.32 2.94 -822.22 -2.42 -27.73 16 15 C 0.55 28.09 7.35 86.36 0.63 28.73 16 16 O -0.64 -34.95 11.41 -4.30 -0.05 -35.00 16 17 C -0.55 -30.42 9.36 24.83 0.23 -30.19 16 18 H 0.08 4.58 5.99 -2.91 -0.02 4.56 16 19 C 0.07 3.67 5.52 85.30 0.47 4.14 16 20 N -0.85 -47.91 13.92 21.83 0.30 -47.61 16 21 Si 1.01 51.11 26.09 68.60 1.79 52.90 16 22 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 23 H -0.27 -14.36 6.23 99.48 0.62 -13.74 16 24 H -0.31 -14.33 7.11 99.48 0.71 -13.62 16 25 C 0.11 3.92 6.54 86.56 0.57 4.49 16 26 C 0.11 3.32 6.60 86.56 0.57 3.89 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.74 7.82 -2.39 -0.02 0.72 16 30 H 0.09 0.60 6.76 -2.38 -0.02 0.58 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.38 5.32 7.25 -74.06 -0.54 4.78 16 33 H 0.06 0.73 6.85 -2.39 -0.02 0.71 16 34 H 0.08 0.82 5.29 -2.38 -0.01 0.81 16 35 H 0.10 0.51 6.56 -2.39 -0.02 0.50 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.14 1.96 4.31 -2.39 -0.01 1.95 16 38 H 0.09 2.88 7.01 -2.39 -0.02 2.87 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.29 14.96 8.29 -92.71 -0.77 14.19 16 41 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.09 3.62 5.33 -2.39 -0.01 3.61 16 43 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 44 H 0.09 2.98 7.02 -2.39 -0.02 2.96 16 Total: -1.00 -74.44 336.90 1.86 -72.58 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.40 Total: 9.30 kcal Atomic # 6 Polarization: 22.22 SS G_CDS: 5.62 Total: 27.84 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -4.52 Total: -94.10 kcal Atomic # 8 Polarization: -67.10 SS G_CDS: -1.43 Total: -68.53 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 1.79 Total: 52.90 kcal Total: -74.44 1.86 -72.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901076609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.184 kcal (2) G-P(sol) polarization free energy of solvation -74.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds