Wall clock time and date at job start Tue Mar 31 2020 03:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47434 * 2 1 4 4 H 1.09006 * 109.46970 * 54.99549 * 3 2 1 5 5 O 1.42902 * 109.46892 * 294.99948 * 3 2 1 6 6 C 1.52995 * 109.47133 * 174.99716 * 3 2 1 7 7 H 1.09001 * 109.47343 * 60.00531 * 6 3 2 8 8 C 1.52995 * 109.47261 * 299.99809 * 6 3 2 9 9 C 1.50707 * 109.46970 * 179.97438 * 6 3 2 10 10 O 1.21281 * 120.00131 * 22.21761 * 9 6 3 11 11 N 1.34778 * 119.99786 * 202.21928 * 9 6 3 12 12 C 1.46972 * 120.59227 * 183.90031 * 11 9 6 13 13 C 1.53371 * 108.63309 * 235.20241 * 12 11 9 14 14 N 1.46962 * 108.63403 * 310.57460 * 13 12 11 15 15 C 1.34778 * 120.59520 * 235.20287 * 14 13 12 16 16 O 1.21686 * 119.99667 * 354.61360 * 15 14 13 17 17 C 1.46367 * 120.00269 * 174.61090 * 15 14 13 18 18 H 1.08010 * 120.00073 * 22.26483 * 17 15 14 19 19 C 1.40042 * 120.00406 * 202.25728 * 17 15 14 20 20 N 1.30680 * 120.00500 * 179.97438 * 19 17 15 21 21 Si 1.86804 * 119.99988 * 359.92726 * 19 17 15 22 22 H 1.48497 * 109.47183 * 275.24854 * 21 19 17 23 23 H 1.48509 * 109.47008 * 35.24578 * 21 19 17 24 24 H 1.48500 * 109.47463 * 155.24296 * 21 19 17 25 25 C 1.46968 * 118.81495 * 55.48181 * 14 13 12 26 26 C 1.46962 * 120.59520 * 3.87352 * 11 9 6 27 27 H 1.08994 * 109.47527 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47538 * 300.00198 * 1 2 3 29 29 H 1.09004 * 109.46781 * 60.00192 * 1 2 3 30 30 H 1.08999 * 109.47025 * 239.99752 * 2 1 3 31 31 H 1.08997 * 109.46969 * 120.00101 * 2 1 3 32 32 H 0.96699 * 114.00146 * 299.99427 * 5 3 2 33 33 H 1.09007 * 109.47170 * 186.73500 * 8 6 3 34 34 H 1.08995 * 109.47418 * 306.73477 * 8 6 3 35 35 H 1.09003 * 109.46708 * 66.73928 * 8 6 3 36 36 H 1.08998 * 109.60657 * 115.45752 * 12 11 9 37 37 H 1.09003 * 109.60774 * 354.94530 * 12 11 9 38 38 H 1.08997 * 109.60512 * 190.83126 * 13 12 11 39 39 H 1.08998 * 109.60802 * 70.31752 * 13 12 11 40 40 H 0.96995 * 120.00031 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.60688 * 64.26150 * 25 14 13 42 42 H 1.08994 * 109.61046 * 184.77530 * 25 14 13 43 43 H 1.09000 * 109.61393 * 244.54221 * 26 11 9 44 44 H 1.08997 * 109.61171 * 5.05789 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6620 2.0813 -1.2211 6 6 3.5648 1.4442 0.1258 7 1 3.9995 0.9052 -0.7160 8 6 3.9695 0.7602 1.4331 9 6 4.0673 2.8650 0.1252 10 8 3.3236 3.7713 0.4356 11 7 5.3431 3.1284 -0.2204 12 6 5.8713 4.4978 -0.1438 13 6 6.4378 4.8820 -1.5163 14 7 7.3259 3.8051 -1.9759 15 6 8.6017 4.0685 -2.3215 16 8 8.9996 5.2181 -2.3487 17 6 9.5085 2.9718 -2.6641 18 1 9.1092 2.0230 -2.9910 19 6 10.8939 3.1528 -2.5683 20 7 11.7035 2.1735 -2.8737 21 14 11.5846 4.7945 -2.0050 22 1 11.6829 5.7148 -3.1663 23 1 10.6858 5.3844 -0.9806 24 1 12.9342 4.5894 -1.4204 25 6 6.7961 2.4366 -2.0579 26 6 6.2311 2.0515 -0.6801 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0143 1.6541 -2.0139 33 1 5.0442 0.8664 1.5813 34 1 3.4405 1.2247 2.2652 35 1 3.7123 -0.2979 1.3843 36 1 6.6626 4.5433 0.6044 37 1 5.0691 5.1847 0.1262 38 1 7.0022 5.8107 -1.4320 39 1 5.6209 5.0106 -2.2263 40 1 12.6630 2.2988 -2.8069 41 1 6.0041 2.3952 -2.8057 42 1 7.5972 1.7500 -2.3315 43 1 7.0481 1.9228 0.0299 44 1 5.6667 1.1228 -0.7644 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901076610.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:38 Heat of formation + Delta-G solvation = -155.213758 kcal Electronic energy + Delta-G solvation = -25499.265467 eV Core-core repulsion = 21836.185492 eV Total energy + Delta-G solvation = -3663.079975 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60105 -40.21014 -38.70823 -37.63252 -35.09429 -34.95431 -34.41890 -33.09417 -32.12346 -29.33833 -28.05872 -26.89772 -25.41859 -24.51689 -23.34542 -22.17030 -21.22329 -19.90798 -18.83548 -18.27609 -17.72710 -17.48067 -17.07470 -16.59233 -16.30606 -16.22041 -16.12242 -15.66940 -15.42196 -14.97457 -14.69570 -14.49096 -14.33872 -14.01985 -13.97216 -13.49978 -13.35504 -13.20636 -13.00917 -12.89588 -12.75402 -12.74159 -12.57443 -12.38050 -12.31072 -12.22751 -11.70604 -11.57642 -11.52250 -11.18506 -10.90014 -10.58068 -10.09820 -10.04067 -9.15623 -8.77024 -6.97991 1.32082 1.37083 1.61237 1.62874 1.86238 2.08189 2.32955 2.63394 3.27205 3.33902 3.58491 3.61768 3.85837 3.90428 4.05161 4.16216 4.18354 4.26223 4.29011 4.33275 4.43665 4.51854 4.63467 4.64593 4.76504 4.79777 4.82109 4.85872 4.88765 5.02239 5.05067 5.10574 5.14444 5.26255 5.39566 5.42701 5.45810 5.67945 5.92618 6.20203 6.40089 6.63232 6.90438 7.10121 7.16625 7.93321 8.27923 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.028885 B = 0.003623 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.120827 B = 7726.115698 C = 8107.863042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.149 4.149 3 C 0.126 3.874 4 H 0.078 0.922 5 O -0.575 6.575 6 C -0.138 4.138 7 H 0.124 0.876 8 C -0.141 4.141 9 C 0.519 3.481 10 O -0.579 6.579 11 N -0.609 5.609 12 C 0.108 3.892 13 C 0.109 3.891 14 N -0.631 5.631 15 C 0.552 3.448 16 O -0.644 6.644 17 C -0.545 4.545 18 H 0.094 0.906 19 C 0.073 3.927 20 N -0.850 5.850 21 Si 0.997 3.003 22 H -0.293 1.293 23 H -0.281 1.281 24 H -0.300 1.300 25 C 0.100 3.900 26 C 0.098 3.902 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.383 0.617 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.291 0.709 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.328 -10.623 7.073 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.186 4.186 3 C 0.067 3.933 4 H 0.096 0.904 5 O -0.382 6.382 6 C -0.159 4.159 7 H 0.142 0.858 8 C -0.198 4.198 9 C 0.310 3.690 10 O -0.458 6.458 11 N -0.342 5.342 12 C -0.016 4.016 13 C -0.015 4.015 14 N -0.364 5.364 15 C 0.359 3.641 16 O -0.537 6.537 17 C -0.581 4.581 18 H 0.112 0.888 19 C -0.142 4.142 20 N -0.481 5.481 21 Si 0.829 3.171 22 H -0.221 1.221 23 H -0.208 1.208 24 H -0.229 1.229 25 C -0.023 4.023 26 C -0.025 4.025 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.231 0.769 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.121 0.879 43 H 0.091 0.909 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.685 -9.315 7.598 21.384 hybrid contribution 0.978 0.765 -0.393 1.302 sum -16.706 -8.551 7.205 20.103 Atomic orbital electron populations 1.21703 0.95543 1.01940 1.01574 1.22262 0.96740 0.95003 1.04597 1.21794 0.90290 0.93926 0.87296 0.90381 1.86666 1.76918 1.58239 1.16357 1.22210 0.98521 0.91680 1.03495 0.85811 1.21794 1.02200 1.02046 0.93774 1.21197 0.80318 0.92315 0.75216 1.90663 1.55987 1.48944 1.50252 1.48173 1.11585 1.08870 1.65529 1.21795 0.98600 0.84576 0.96618 1.21640 0.93005 0.91934 0.94892 1.47682 1.10916 1.08810 1.69031 1.18412 0.81442 0.88416 0.75835 1.90251 1.75343 1.25128 1.62970 1.20904 0.90587 0.99637 1.47003 0.88839 1.26088 0.97133 0.99826 0.91152 1.69520 1.05618 1.33633 1.39333 0.84868 0.74019 0.78974 0.79224 1.22050 1.20784 1.22945 1.22226 0.99488 0.83617 0.96966 1.22455 0.94114 0.90599 0.95337 0.91416 0.93536 0.93272 0.89700 0.88993 0.76851 0.91650 0.92706 0.87892 0.91754 0.88815 0.90583 0.92081 0.89895 0.91045 0.87909 0.90862 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.81 71.98 0.71 -1.18 16 2 C -0.15 -1.58 5.40 30.59 0.17 -1.42 16 3 C 0.13 2.21 2.10 30.59 0.06 2.28 16 4 H 0.08 1.79 7.89 -2.38 -0.02 1.77 16 5 O -0.58 -12.31 12.33 -146.06 -1.80 -14.11 16 6 C -0.14 -2.24 1.66 -11.54 -0.02 -2.26 16 7 H 0.12 1.35 6.25 -2.39 -0.01 1.33 16 8 C -0.14 -1.76 8.55 71.98 0.62 -1.15 16 9 C 0.52 13.74 6.52 87.66 0.57 14.31 16 10 O -0.58 -20.39 15.30 -0.11 0.00 -20.39 16 11 N -0.61 -16.36 2.95 -817.12 -2.41 -18.77 16 12 C 0.11 3.40 6.60 86.41 0.57 3.97 16 13 C 0.11 3.96 6.58 86.42 0.57 4.53 16 14 N -0.63 -25.38 2.94 -822.24 -2.42 -27.80 16 15 C 0.55 28.12 7.22 86.36 0.62 28.75 16 16 O -0.64 -36.70 11.76 -4.30 -0.05 -36.75 16 17 C -0.54 -28.90 9.24 24.82 0.23 -28.67 16 18 H 0.09 4.81 6.18 -2.91 -0.02 4.79 16 19 C 0.07 4.01 5.52 85.30 0.47 4.48 16 20 N -0.85 -45.92 13.92 21.83 0.30 -45.61 16 21 Si 1.00 50.83 26.07 68.60 1.79 52.62 16 22 H -0.29 -15.56 7.11 99.48 0.71 -14.85 16 23 H -0.28 -15.32 6.38 99.48 0.63 -14.68 16 24 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 25 C 0.10 3.02 6.54 86.57 0.57 3.59 16 26 C 0.10 2.25 6.11 86.57 0.53 2.78 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.73 7.82 -2.38 -0.02 0.72 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.71 6.33 -2.39 -0.02 0.69 16 32 H 0.38 5.16 9.05 -74.06 -0.67 4.49 16 33 H 0.06 0.87 7.77 -2.38 -0.02 0.85 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 0.69 6.69 -2.39 -0.02 0.67 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.09 2.99 6.99 -2.39 -0.02 2.97 16 38 H 0.08 3.07 7.02 -2.39 -0.02 3.06 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.29 14.47 8.29 -92.71 -0.77 13.70 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.10 3.35 5.41 -2.39 -0.01 3.33 16 43 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.13 1.86 5.38 -2.39 -0.01 1.85 16 Total: -1.00 -74.36 343.88 1.35 -73.01 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 0.27 Total: 7.80 kcal Atomic # 6 Polarization: 24.35 SS G_CDS: 5.66 Total: 30.01 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -4.52 Total: -92.18 kcal Atomic # 8 Polarization: -69.40 SS G_CDS: -1.85 Total: -71.25 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 1.79 Total: 52.62 kcal Total: -74.36 1.35 -73.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901076610.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.206 kcal (2) G-P(sol) polarization free energy of solvation -74.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds