Wall clock time and date at job start Tue Mar 31 2020 03:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46090 * 118.73146 * 2 1 4 4 C 1.53016 * 109.92685 * 198.38153 * 3 2 1 5 5 O 1.43243 * 108.67382 * 310.83848 * 4 3 2 6 6 C 1.42963 * 112.98655 * 68.35799 * 5 4 3 7 7 H 1.09001 * 109.41049 * 70.43969 * 6 5 4 8 8 C 1.50696 * 109.41359 * 190.30071 * 6 5 4 9 9 O 1.21274 * 120.00347 * 5.00307 * 8 6 5 10 10 N 1.34778 * 119.99830 * 185.00304 * 8 6 5 11 11 C 1.46506 * 119.99945 * 180.02562 * 10 8 6 12 12 C 1.52996 * 109.46955 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47350 * 59.99944 * 12 11 10 14 14 C 1.53004 * 109.47302 * 299.99466 * 12 11 10 15 15 C 1.52998 * 109.46929 * 179.97438 * 12 11 10 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 12 11 17 17 H 1.08005 * 119.99758 * 359.97438 * 16 15 12 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 12 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 C 1.33870 * 118.73414 * 180.02562 * 2 1 3 25 25 O 1.21287 * 118.82701 * 358.08832 * 24 2 1 26 26 H 1.08993 * 109.47139 * 89.99953 * 1 2 3 27 27 H 1.09004 * 109.46667 * 209.99988 * 1 2 3 28 28 H 1.08999 * 109.47004 * 329.99651 * 1 2 3 29 29 H 1.09004 * 109.39283 * 78.24171 * 3 2 1 30 30 H 1.09005 * 109.39462 * 318.52264 * 3 2 1 31 31 H 1.09004 * 109.60649 * 191.07990 * 4 3 2 32 32 H 1.09004 * 109.73659 * 70.67567 * 4 3 2 33 33 H 0.96998 * 120.00160 * 359.97438 * 10 8 6 34 34 H 1.09000 * 109.46973 * 59.99731 * 11 10 8 35 35 H 1.09002 * 109.46843 * 299.99613 * 11 10 8 36 36 H 1.09002 * 109.47144 * 179.97438 * 13 12 11 37 37 H 1.08995 * 109.46867 * 299.99830 * 13 12 11 38 38 H 1.08994 * 109.47054 * 59.99763 * 13 12 11 39 39 H 1.09000 * 109.47381 * 300.00659 * 14 12 11 40 40 H 1.09005 * 109.46541 * 60.00604 * 14 12 11 41 41 H 1.09001 * 109.47046 * 179.97438 * 14 12 11 42 42 H 1.09001 * 109.47671 * 60.00109 * 15 12 11 43 43 H 1.09006 * 109.47297 * 299.99829 * 15 12 11 44 44 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1672 1.2810 0.0000 4 6 3.6150 1.0821 -0.4536 5 8 4.1835 -0.0027 0.2893 6 6 3.6084 -1.2687 -0.0428 7 1 3.9240 -1.5582 -1.0451 8 6 4.0730 -2.3051 0.9476 9 8 4.7478 -1.9747 1.8995 10 7 3.7385 -3.5994 0.7754 11 6 4.1897 -4.6069 1.7386 12 6 3.6764 -5.9842 1.3139 13 6 4.2211 -6.3258 -0.0744 14 6 2.1470 -5.9678 1.2719 15 6 4.1481 -7.0365 2.3194 16 6 3.6420 -8.3932 1.9015 17 1 3.0433 -8.4945 1.0083 18 6 3.9431 -9.5048 2.6594 19 7 4.6717 -9.3813 3.7474 20 14 3.3151 -11.1862 2.1418 21 1 3.7741 -12.2078 3.1170 22 1 1.8307 -11.1698 2.1030 23 1 3.8420 -11.5178 0.7935 24 6 2.1085 -1.1738 -0.0005 25 8 1.4585 -2.1972 0.0345 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 2.1575 1.6991 1.0066 30 1 1.6657 1.9688 -0.6810 31 1 4.1853 1.9920 -0.2665 32 1 3.6384 0.8483 -1.5181 33 1 3.1984 -3.8636 0.0143 34 1 3.8012 -4.3638 2.7276 35 1 5.2792 -4.6183 1.7689 36 1 3.8558 -7.3073 -0.3767 37 1 3.8854 -5.5762 -0.7909 38 1 5.3106 -6.3375 -0.0444 39 1 1.7588 -5.7245 2.2609 40 1 1.8113 -5.2182 0.5552 41 1 1.7813 -6.9490 0.9689 42 1 3.7603 -6.7935 3.3087 43 1 5.2377 -7.0481 2.3490 44 1 4.9974 -8.5081 4.0163 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908214396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:07 Heat of formation + Delta-G solvation = -118.393420 kcal Electronic energy + Delta-G solvation = -25264.393374 eV Core-core repulsion = 21602.910048 eV Total energy + Delta-G solvation = -3661.483326 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.35599 -39.27902 -38.15057 -37.09680 -35.76341 -33.73076 -32.16847 -30.89983 -29.54428 -26.98307 -26.57887 -26.47510 -25.41212 -24.26015 -22.80409 -20.75401 -19.65833 -18.71011 -18.32457 -17.48261 -17.17943 -16.44233 -16.21966 -15.84792 -15.39089 -14.94586 -14.64317 -14.56293 -14.08297 -13.78763 -13.66351 -13.47944 -13.29965 -13.10236 -12.72664 -12.71768 -12.54399 -12.13381 -11.78151 -11.69152 -11.15059 -11.12984 -11.07205 -10.93800 -10.59532 -10.19651 -10.06728 -9.92287 -9.89231 -9.79600 -9.36038 -9.22949 -8.75584 -8.42443 -8.26983 -6.28409 -3.96976 1.93338 2.19901 2.76853 2.78640 3.46949 3.48785 3.67208 3.71992 3.81334 4.19069 4.46728 4.53738 4.59447 4.64263 4.74332 4.87614 5.00378 5.07040 5.22704 5.44979 5.45957 5.47258 5.61317 5.74594 5.78706 6.17235 6.20885 6.24398 6.30584 6.41395 6.53579 6.65344 6.75555 6.80256 7.02964 7.07154 7.10972 7.40132 7.54541 7.55642 7.69455 8.26668 8.31023 8.52731 8.95158 9.73793 11.11606 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.030592 B = 0.003205 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.056972 B = 8733.865504 C = 9223.468968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.607 5.607 3 C 0.077 3.923 4 C 0.040 3.960 5 O -0.338 6.338 6 C 0.058 3.942 7 H 0.118 0.882 8 C 0.526 3.474 9 O -0.519 6.519 10 N -0.700 5.700 11 C 0.129 3.871 12 C -0.065 4.065 13 C -0.127 4.127 14 C -0.127 4.127 15 C 0.023 3.977 16 C -0.590 4.590 17 H 0.053 0.947 18 C 0.013 3.987 19 N -0.915 5.915 20 Si 1.066 2.934 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.289 1.289 24 C 0.496 3.504 25 O -0.518 6.518 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.066 0.934 33 H 0.406 0.594 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.030 0.970 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.037 0.963 41 H 0.066 0.934 42 H 0.009 0.991 43 H 0.009 0.991 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.329 23.597 -12.576 27.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C -0.046 4.046 4 C -0.037 4.037 5 O -0.255 6.255 6 C -0.007 4.007 7 H 0.136 0.864 8 C 0.308 3.692 9 O -0.395 6.395 10 N -0.354 5.354 11 C 0.007 3.993 12 C -0.066 4.066 13 C -0.184 4.184 14 C -0.184 4.184 15 C -0.014 4.014 16 C -0.628 4.628 17 H 0.072 0.928 18 C -0.191 4.191 19 N -0.552 5.552 20 Si 0.895 3.105 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.216 1.216 24 C 0.281 3.719 25 O -0.393 6.393 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.141 0.859 32 H 0.085 0.915 33 H 0.243 0.757 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.032 21.697 -11.293 25.192 hybrid contribution -0.510 1.780 -1.027 2.117 sum -6.541 23.477 -12.320 27.308 Atomic orbital electron populations 1.21756 0.78391 1.03869 1.02258 1.47318 1.07762 1.05738 1.73336 1.22249 0.93495 0.85436 1.03405 1.23113 0.92674 0.91798 0.96129 1.88368 1.60377 1.13139 1.63660 1.22240 0.89622 0.87548 1.01245 0.86440 1.19266 0.81263 0.82990 0.85709 1.90739 1.38073 1.80414 1.30266 1.46041 1.53563 1.05930 1.29822 1.21692 0.99178 0.86960 0.91516 1.20760 0.95778 0.92519 0.97496 1.21756 1.00300 1.01189 0.95133 1.21749 0.94819 1.01401 1.00441 1.19216 0.95740 0.93335 0.93131 1.21984 1.36017 0.92563 1.12271 0.92843 1.25782 0.95403 1.03591 0.94290 1.70770 1.33276 1.27628 1.23503 0.83582 0.75878 0.75488 0.75569 1.20921 1.21548 1.21557 1.20404 0.90314 0.83958 0.77177 1.90795 1.66729 1.33314 1.48488 0.92225 0.89781 0.90916 0.90225 0.89196 0.85916 0.91530 0.75678 0.91786 0.91595 0.91232 0.95108 0.93443 0.93629 0.94413 0.91464 0.97299 0.97286 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.34 59.85 0.62 1.21 16 2 N -0.61 -5.63 3.23 -182.31 -0.59 -6.22 16 3 C 0.08 0.45 6.63 -4.25 -0.03 0.42 16 4 C 0.04 0.25 6.89 37.17 0.26 0.50 16 5 O -0.34 -3.98 10.03 -55.12 -0.55 -4.54 16 6 C 0.06 0.72 3.31 -29.21 -0.10 0.63 16 7 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 8 C 0.53 8.78 7.06 -10.99 -0.08 8.70 16 9 O -0.52 -10.61 16.50 -14.32 -0.24 -10.85 16 10 N -0.70 -11.56 4.49 -60.29 -0.27 -11.83 16 11 C 0.13 2.46 4.56 -4.04 -0.02 2.44 16 12 C -0.07 -1.32 0.54 -154.51 -0.08 -1.41 16 13 C -0.13 -2.36 8.05 37.16 0.30 -2.06 16 14 C -0.13 -2.49 8.05 37.16 0.30 -2.19 16 15 C 0.02 0.59 3.35 -27.88 -0.09 0.49 16 16 C -0.59 -16.24 7.65 -34.44 -0.26 -16.51 16 17 H 0.05 1.43 5.68 -52.48 -0.30 1.13 16 18 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 19 N -0.92 -28.23 13.65 55.43 0.76 -27.48 16 20 Si 1.07 25.38 29.90 -169.99 -5.08 20.29 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.50 6.20 7.13 -11.56 -0.08 6.12 16 25 O -0.52 -7.90 14.58 5.55 0.08 -7.82 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.81 7.23 -51.93 -0.38 0.44 16 28 H 0.07 0.36 8.04 -51.93 -0.42 -0.06 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.25 8.13 -51.93 -0.42 -0.18 16 31 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 33 H 0.41 6.18 5.22 -40.82 -0.21 5.97 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 37 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.04 0.66 6.86 -51.93 -0.36 0.30 16 41 H 0.07 1.40 6.62 -51.93 -0.34 1.05 16 42 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 43 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 44 H 0.27 8.29 7.22 -40.82 -0.29 8.00 16 LS Contribution 350.45 15.07 5.28 5.28 Total: -1.00 -35.70 350.45 -6.83 -42.53 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.85 Total: 2.00 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 0.63 Total: -1.38 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.10 Total: -45.52 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.71 Total: -23.21 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.08 Total: 20.29 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.70 -6.83 -42.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908214396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.860 kcal (2) G-P(sol) polarization free energy of solvation -35.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds