Wall clock time and date at job start Tue Mar 31 2020 05:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99988 * 2 1 4 4 O 1.20819 * 120.00145 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99797 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.51902 * 60.12924 * 5 3 2 7 7 C 1.53113 * 109.52274 * 299.99819 * 5 3 2 8 8 C 1.53041 * 109.27586 * 182.37487 * 7 5 3 9 9 N 1.46846 * 109.52267 * 59.18484 * 8 7 5 10 10 C 1.46899 * 111.00302 * 174.16053 * 9 8 7 11 11 C 1.50698 * 109.46987 * 66.03980 * 10 9 8 12 12 O 1.21283 * 120.00472 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99538 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 10 15 15 C 1.50703 * 109.47138 * 180.28062 * 14 13 11 16 16 H 1.08001 * 120.00037 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99824 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00502 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99575 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47245 * 60.00392 * 19 17 15 21 21 H 1.48504 * 109.46709 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47176 * 299.99915 * 19 17 15 23 23 C 1.46854 * 111.19543 * 298.25724 * 9 8 7 24 24 H 1.09007 * 109.45768 * 301.72741 * 23 9 8 25 25 C 1.52998 * 109.46284 * 181.75896 * 23 9 8 26 26 C 1.53038 * 109.52417 * 61.73869 * 23 9 8 27 27 H 1.08998 * 109.47242 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47363 * 300.00598 * 1 2 3 29 29 H 1.09005 * 109.46693 * 59.99952 * 1 2 3 30 30 H 1.09007 * 109.50157 * 62.43970 * 7 5 3 31 31 H 1.08998 * 109.50916 * 302.31799 * 7 5 3 32 32 H 1.09000 * 109.46464 * 299.16575 * 8 7 5 33 33 H 1.09003 * 109.44833 * 179.19155 * 8 7 5 34 34 H 1.09003 * 109.46477 * 306.04469 * 10 9 8 35 35 H 1.08993 * 109.47002 * 186.04796 * 10 9 8 36 36 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 37 37 H 1.09009 * 109.47454 * 300.27637 * 14 13 11 38 38 H 1.08998 * 109.47492 * 60.27932 * 14 13 11 39 39 H 0.96997 * 120.00009 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.46904 * 59.99349 * 25 23 9 41 41 H 1.08999 * 109.47326 * 179.97438 * 25 23 9 42 42 H 1.08998 * 109.46722 * 299.99868 * 25 23 9 43 43 H 1.08999 * 109.49790 * 180.87649 * 26 23 9 44 44 H 1.09003 * 109.53510 * 60.78420 * 26 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9572 0.7827 -0.8900 7 6 4.1146 0.5813 1.2507 8 6 5.6389 0.7162 1.2759 9 7 6.0057 2.1381 1.2825 10 6 7.4557 2.3070 1.4460 11 6 8.1650 1.7593 0.2344 12 8 7.5255 1.2763 -0.6759 13 7 9.5100 1.8072 0.1620 14 6 10.1998 1.2694 -1.0131 15 6 11.6877 1.4382 -0.8432 16 1 12.0802 1.9003 0.0506 17 6 12.5479 1.0036 -1.8293 18 7 12.0700 0.4423 -2.9183 19 14 14.3921 1.2136 -1.6189 20 1 14.8384 0.4824 -0.4058 21 1 15.0913 0.6694 -2.8106 22 1 14.7127 2.6562 -1.4733 23 6 5.5306 2.8147 0.0688 24 1 5.9528 2.3250 -0.8088 25 6 5.9710 4.2796 0.0963 26 6 4.0031 2.7424 0.0076 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 3.8430 -0.4741 1.2300 31 1 3.6932 1.0488 2.1407 32 1 6.0606 0.2364 0.3927 33 1 6.0310 0.2357 2.1723 34 1 7.7862 1.7690 2.3346 35 1 7.6881 3.3662 1.5553 36 1 10.0215 2.1939 0.8899 37 1 9.9642 0.2105 -1.1199 38 1 9.8727 1.8060 -1.9037 39 1 12.6752 0.1363 -3.6118 40 1 7.0589 4.3312 0.1390 41 1 5.6188 4.7819 -0.8047 42 1 5.5493 4.7693 0.9740 43 1 3.6519 3.2310 -0.9012 44 1 3.5793 3.2440 0.8775 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933174506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:51 Heat of formation + Delta-G solvation = -149.057137 kcal Electronic energy + Delta-G solvation = -24922.068125 eV Core-core repulsion = 21259.255120 eV Total energy + Delta-G solvation = -3662.813004 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.93215 -41.16274 -39.08232 -37.55648 -36.11711 -34.81721 -34.34012 -33.36919 -30.29031 -29.04355 -28.31988 -27.45246 -25.30755 -24.12603 -23.27390 -21.84473 -21.28053 -20.80012 -18.87849 -18.55428 -17.71396 -17.57389 -17.32631 -17.12890 -16.72793 -16.45322 -16.25776 -15.67631 -15.25444 -14.95576 -14.88528 -14.47704 -14.10040 -14.00574 -13.79482 -13.74192 -13.23112 -13.15111 -12.95168 -12.88924 -12.77242 -12.70603 -12.60159 -12.25338 -12.19779 -11.87886 -11.75450 -11.62976 -11.49931 -11.43030 -11.25250 -11.22202 -10.77999 -9.76247 -9.08622 -8.29222 -6.45924 1.09086 1.42788 1.46412 1.54560 1.70516 1.77554 2.33190 2.66195 2.87583 3.05471 3.52313 3.69291 3.76261 4.03618 4.06937 4.14912 4.28971 4.31651 4.36123 4.41831 4.53985 4.55817 4.59187 4.70013 4.71501 4.79734 4.87745 4.93612 4.99341 5.05336 5.12034 5.20178 5.21045 5.25501 5.31227 5.43209 5.52900 5.73404 5.86025 5.98905 6.08603 6.65901 6.66162 6.94226 7.23999 7.53352 8.82260 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.030084 B = 0.002863 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.496725 B = 9776.676677 C =10090.702746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.474 3.526 4 O -0.533 6.533 5 C -0.083 4.083 6 H 0.101 0.899 7 C -0.092 4.092 8 C 0.042 3.958 9 N -0.501 5.501 10 C 0.039 3.961 11 C 0.464 3.536 12 O -0.589 6.589 13 N -0.708 5.708 14 C 0.269 3.731 15 C -0.556 4.556 16 H 0.084 0.916 17 C 0.004 3.996 18 N -0.932 5.932 19 Si 0.982 3.018 20 H -0.261 1.261 21 H -0.287 1.287 22 H -0.262 1.262 23 C 0.058 3.942 24 H 0.054 0.946 25 C -0.142 4.142 26 C -0.082 4.082 27 H 0.131 0.869 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.035 0.965 33 H 0.094 0.906 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.408 0.592 37 H -0.015 1.015 38 H -0.016 1.016 39 H 0.268 0.732 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.543 2.312 11.925 21.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.318 3.682 4 O -0.423 6.423 5 C -0.102 4.102 6 H 0.119 0.881 7 C -0.129 4.129 8 C -0.086 4.086 9 N -0.224 5.224 10 C -0.092 4.092 11 C 0.251 3.749 12 O -0.472 6.472 13 N -0.359 5.359 14 C 0.146 3.854 15 C -0.594 4.594 16 H 0.102 0.898 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.805 3.195 20 H -0.186 1.186 21 H -0.212 1.212 22 H -0.187 1.187 23 C -0.050 4.050 24 H 0.072 0.928 25 C -0.199 4.199 26 C -0.120 4.120 27 H 0.149 0.851 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.112 0.888 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.243 0.757 37 H 0.003 0.997 38 H 0.002 0.998 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.426 2.399 11.524 21.865 hybrid contribution 1.302 -0.338 -1.187 1.794 sum -17.123 2.061 10.337 20.108 Atomic orbital electron populations 1.23562 0.74802 1.05717 1.02545 1.86523 1.25031 1.32785 1.83554 1.23918 0.92101 0.81186 0.70971 1.90632 1.67757 1.37220 1.46684 1.21189 0.86273 0.99969 1.02754 0.88065 1.21488 0.94567 1.01307 0.95586 1.22266 0.95579 0.88685 1.02088 1.62537 1.09984 1.12937 1.36912 1.22515 0.87308 1.04608 0.94799 1.22866 0.82713 0.79008 0.90335 1.90552 1.65955 1.48261 1.42391 1.46383 1.06793 1.60315 1.22358 1.18451 0.91666 0.91715 0.83578 1.21618 0.90904 1.41279 1.05600 0.89841 1.26054 1.05196 0.94037 0.94316 1.70126 1.37600 1.40433 1.08872 0.85244 0.77216 0.79143 0.77856 1.18590 1.21239 1.18676 1.21923 0.94419 0.95796 0.92837 0.92780 1.21840 1.00924 0.94249 1.02886 1.21408 0.94219 0.93167 1.03182 0.85092 0.91665 0.92159 0.89034 0.89921 0.94665 0.88808 0.85231 0.85407 0.75672 0.99739 0.99835 0.92319 0.93160 0.92073 0.90347 0.91389 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.58 16 2 O -0.36 -7.66 10.49 -51.44 -0.54 -8.20 16 3 C 0.47 11.57 7.26 71.24 0.52 12.09 16 4 O -0.53 -15.38 15.73 21.99 0.35 -15.03 16 5 C -0.08 -1.97 2.69 -11.46 -0.03 -2.00 16 6 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 7 C -0.09 -1.92 5.31 30.65 0.16 -1.75 16 8 C 0.04 1.03 5.09 86.33 0.44 1.47 16 9 N -0.50 -12.47 4.69 -875.62 -4.11 -16.58 16 10 C 0.04 0.96 5.30 85.56 0.45 1.41 16 11 C 0.46 16.95 7.09 87.66 0.62 17.57 16 12 O -0.59 -26.40 11.62 -3.04 -0.04 -26.43 16 13 N -0.71 -28.33 5.55 -466.78 -2.59 -30.92 16 14 C 0.27 14.44 5.43 85.63 0.46 14.90 16 15 C -0.56 -29.77 9.28 25.60 0.24 -29.53 16 16 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 17 C 0.00 0.19 5.46 84.66 0.46 0.66 16 18 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 19 Si 0.98 41.87 29.54 68.60 2.03 43.89 16 20 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 23 C 0.06 1.60 1.95 44.94 0.09 1.69 16 24 H 0.05 1.94 5.36 -2.38 -0.01 1.93 16 25 C -0.14 -3.38 8.76 71.98 0.63 -2.75 16 26 C -0.08 -2.04 3.96 30.65 0.12 -1.91 16 27 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 29 H 0.06 0.89 8.13 -2.38 -0.02 0.87 16 30 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.14 6.00 -2.39 -0.01 1.12 16 33 H 0.09 1.96 8.06 -2.39 -0.02 1.94 16 34 H 0.13 2.46 8.06 -2.39 -0.02 2.44 16 35 H 0.13 2.60 6.32 -2.39 -0.02 2.59 16 36 H 0.41 13.32 8.32 -92.71 -0.77 12.55 16 37 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 38 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 39 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 40 H 0.05 1.26 6.24 -2.39 -0.01 1.24 16 41 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.08 1.93 8.05 -2.39 -0.02 1.91 16 Total: -1.00 -72.31 352.25 0.98 -71.33 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.23 Total: 24.17 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 5.36 Total: 13.41 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -6.41 Total: -103.14 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -0.23 Total: -49.67 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -72.31 0.98 -71.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933174506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.725 kcal (2) G-P(sol) polarization free energy of solvation -72.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds