Wall clock time and date at job start Tue Mar 31 2020 05:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.57962 * 2 1 4 4 O 1.43072 * 109.52444 * 239.83334 * 2 1 3 5 5 C 1.43070 * 113.59666 * 182.14456 * 4 2 1 6 6 C 1.53148 * 109.14927 * 57.95430 * 5 4 2 7 7 O 1.43072 * 109.14844 * 304.68982 * 6 5 4 8 8 C 1.43078 * 113.59447 * 57.95521 * 7 6 5 9 9 H 1.08998 * 109.52614 * 182.08299 * 8 7 6 10 10 C 1.50693 * 109.52700 * 61.94523 * 8 7 6 11 11 O 1.21283 * 120.00343 * 330.47625 * 10 8 7 12 12 N 1.34778 * 120.00157 * 150.47198 * 10 8 7 13 13 C 1.47212 * 120.81023 * 355.10008 * 12 10 8 14 14 C 1.53195 * 108.85147 * 126.33447 * 13 12 10 15 15 C 1.53041 * 109.31587 * 54.65286 * 14 13 12 16 16 C 1.53042 * 109.53400 * 298.63155 * 15 14 13 17 17 H 1.09004 * 109.50000 * 301.41829 * 16 15 14 18 18 N 1.46498 * 109.52571 * 181.33061 * 16 15 14 19 19 C 1.36945 * 119.99556 * 85.14411 * 18 16 15 20 20 H 1.07997 * 119.99982 * 0.02562 * 19 18 16 21 21 C 1.38808 * 119.99629 * 180.02562 * 19 18 16 22 22 N 1.31622 * 120.00521 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99805 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47223 * 60.00107 * 23 21 19 25 25 H 1.48504 * 109.47212 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47151 * 299.99996 * 23 21 19 27 27 C 1.46921 * 120.63260 * 174.95291 * 12 10 8 28 28 H 1.09006 * 109.46846 * 301.17303 * 1 2 3 29 29 H 1.09004 * 109.46705 * 61.16695 * 1 2 3 30 30 H 1.08999 * 109.47049 * 181.17275 * 1 2 3 31 31 H 1.09002 * 109.52639 * 298.05744 * 5 4 2 32 32 H 1.08999 * 109.58428 * 177.88347 * 5 4 2 33 33 H 1.09000 * 109.52655 * 184.79021 * 6 5 4 34 34 H 1.08995 * 109.57611 * 64.62270 * 6 5 4 35 35 H 1.08996 * 109.53360 * 6.52858 * 13 12 10 36 36 H 1.09002 * 109.55633 * 246.14922 * 13 12 10 37 37 H 1.08998 * 109.49799 * 294.69109 * 14 13 12 38 38 H 1.09008 * 109.51753 * 174.61634 * 14 13 12 39 39 H 1.08994 * 109.46110 * 178.61199 * 15 14 13 40 40 H 1.09001 * 109.46160 * 58.64805 * 15 14 13 41 41 H 0.96996 * 120.00190 * 265.14634 * 18 16 15 42 42 H 0.96994 * 120.00273 * 180.02562 * 22 21 19 43 43 H 1.08990 * 109.59037 * 113.82872 * 27 12 10 44 44 H 1.08998 * 109.58879 * 353.53551 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 8 2.0082 -0.6776 -1.1658 5 6 3.4344 -0.7712 -1.2293 6 6 3.9463 -1.4965 0.0187 7 8 3.4681 -0.8189 1.1845 8 6 2.0418 -0.7253 1.2479 9 1 1.7526 -0.1677 2.1387 10 6 1.4483 -2.1092 1.3051 11 8 2.0247 -3.0385 0.7805 12 7 0.2769 -2.3145 1.9393 13 6 -0.3845 -1.2231 2.6732 14 6 -1.8236 -1.0865 2.1660 15 6 -2.5313 -2.4386 2.2808 16 6 -1.8086 -3.4699 1.4111 17 1 -1.7983 -3.1295 0.3757 18 7 -2.5048 -4.7561 1.4962 19 6 -3.5719 -5.0125 0.6772 20 1 -3.9000 -4.2667 -0.0316 21 6 -4.2319 -6.2309 0.7582 22 7 -3.8324 -7.1397 1.6225 23 14 -5.6880 -6.5804 -0.3585 24 1 -5.2547 -6.5007 -1.7766 25 1 -6.2129 -7.9407 -0.0765 26 1 -6.7545 -5.5775 -0.1097 27 6 -0.3693 -3.6336 1.9098 28 1 -0.3633 0.5320 0.8793 29 1 -0.3633 0.4956 -0.9003 30 1 -0.3633 -1.0274 0.0210 31 1 3.8638 0.2298 -1.2706 32 1 3.7247 -1.3292 -2.1195 33 1 5.0363 -1.4965 0.0187 34 1 3.5820 -2.5238 0.0193 35 1 0.1533 -0.2907 2.5023 36 1 -0.3929 -1.4526 3.7388 37 1 -1.8133 -0.7685 1.1235 38 1 -2.3528 -0.3467 2.7668 39 1 -3.5629 -2.3383 1.9435 40 1 -2.5195 -2.7676 3.3199 41 1 -2.2099 -5.4260 2.1327 42 1 -4.2933 -7.9913 1.6788 43 1 -0.3765 -4.0596 2.9130 44 1 0.1777 -4.2935 1.2365 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999401044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:15 Heat of formation + Delta-G solvation = -91.814312 kcal Electronic energy + Delta-G solvation = -26338.102808 eV Core-core repulsion = 22677.772039 eV Total energy + Delta-G solvation = -3660.330769 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.24010 -39.04724 -37.31720 -36.07176 -34.78628 -33.21460 -32.17718 -31.24133 -29.11794 -28.56591 -27.23094 -25.06306 -23.84072 -23.47797 -22.19325 -21.95176 -19.86152 -18.90788 -17.72531 -17.24415 -17.11851 -16.47062 -16.22643 -15.73706 -15.27701 -14.84733 -14.42043 -14.33037 -14.17355 -13.64483 -13.58455 -13.51261 -13.07664 -12.94465 -12.67431 -12.57653 -12.19992 -12.19201 -12.04080 -11.76954 -11.30499 -11.06431 -10.92573 -10.87844 -10.69029 -10.59818 -10.41985 -10.31338 -10.10602 -9.74763 -9.66793 -8.91948 -8.75889 -8.44640 -7.00359 -5.78497 -3.08387 2.54446 2.96001 3.43521 3.48103 3.48884 3.50593 3.56752 4.27903 4.30203 4.57181 4.60949 4.78626 4.88127 4.95093 4.98661 5.09620 5.15495 5.21007 5.26058 5.37198 5.48461 5.53717 5.61543 5.63920 5.68096 5.73201 5.79283 5.91575 6.00209 6.07131 6.13348 6.23700 6.36055 6.51411 6.65728 6.74140 6.84614 6.90163 7.02358 7.49215 7.67852 8.21798 8.39404 9.50532 10.05502 10.40425 11.43894 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.022536 B = 0.004010 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.141296 B = 6980.617313 C = 7181.670065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.069 3.931 3 H 0.077 0.923 4 O -0.366 6.366 5 C 0.030 3.970 6 C -0.009 4.009 7 O -0.359 6.359 8 C 0.038 3.962 9 H 0.130 0.870 10 C 0.503 3.497 11 O -0.527 6.527 12 N -0.600 5.600 13 C 0.101 3.899 14 C -0.144 4.144 15 C -0.137 4.137 16 C 0.169 3.831 17 H 0.050 0.950 18 N -0.721 5.721 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.105 3.895 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.065 0.935 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.209 18.354 0.646 22.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.010 3.990 3 H 0.095 0.905 4 O -0.285 6.285 5 C -0.046 4.046 6 C -0.084 4.084 7 O -0.276 6.276 8 C -0.023 4.023 9 H 0.148 0.852 10 C 0.291 3.709 11 O -0.404 6.404 12 N -0.335 5.335 13 C -0.021 4.021 14 C -0.183 4.183 15 C -0.178 4.178 16 C 0.058 3.942 17 H 0.068 0.932 18 N -0.362 5.362 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.017 4.017 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.396 17.808 0.235 21.699 hybrid contribution -0.740 -0.384 -0.252 0.871 sum 11.656 17.424 -0.017 20.963 Atomic orbital electron populations 1.22327 0.91709 1.04723 1.03374 1.22603 0.96499 0.95198 0.84681 0.90518 1.88173 1.20860 1.78298 1.41191 1.23192 0.81610 1.00272 0.99573 1.23903 0.99782 1.00420 0.84330 1.88135 1.17606 1.77970 1.43907 1.22960 0.83604 0.94470 1.01278 0.85243 1.21041 0.81024 0.90781 0.78085 1.90520 1.59333 1.44412 1.46144 1.48277 1.21185 1.12460 1.51535 1.21999 0.94209 0.89519 0.96421 1.22198 0.94406 0.99426 1.02238 1.22281 1.00454 0.93757 1.01264 1.20467 0.88787 0.87964 0.96951 0.93204 1.42298 1.35471 1.13001 1.45396 1.19155 1.05489 0.99118 1.13367 0.91201 1.24740 0.99861 0.96581 0.99504 1.69649 1.42990 1.07094 1.38253 0.86269 0.82489 0.77099 0.80325 1.21212 1.21667 1.21258 1.22021 0.94520 0.83028 1.02154 0.89971 0.90880 0.90004 0.92822 0.87812 0.88357 0.86793 0.90329 0.90980 0.90765 0.91175 0.91468 0.92469 0.78189 0.93393 0.91646 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 6.85 37.16 0.25 -1.43 16 2 C 0.07 0.77 3.15 -26.65 -0.08 0.68 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 O -0.37 -5.01 10.23 -48.81 -0.50 -5.50 16 5 C 0.03 0.34 7.05 37.23 0.26 0.60 16 6 C -0.01 -0.10 6.60 37.23 0.25 0.14 16 7 O -0.36 -4.74 10.64 -61.56 -0.65 -5.40 16 8 C 0.04 0.46 2.88 -27.81 -0.08 0.38 16 9 H 0.13 1.17 6.01 -51.93 -0.31 0.86 16 10 C 0.50 7.73 5.64 -10.99 -0.06 7.67 16 11 O -0.53 -9.96 12.92 -12.29 -0.16 -10.12 16 12 N -0.60 -8.61 2.25 -172.54 -0.39 -9.00 16 13 C 0.10 1.07 5.21 -3.55 -0.02 1.05 16 14 C -0.14 -1.65 5.34 -26.61 -0.14 -1.79 16 15 C -0.14 -2.22 5.47 -26.69 -0.15 -2.37 16 16 C 0.17 3.29 2.92 -67.81 -0.20 3.09 16 17 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 18 N -0.72 -17.80 5.12 -53.30 -0.27 -18.07 16 19 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 23 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.11 1.86 5.88 -3.71 -0.02 1.83 16 28 H 0.08 0.62 5.64 -51.93 -0.29 0.32 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.08 5.15 -51.93 -0.27 0.81 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.11 1.74 5.00 -51.94 -0.26 1.48 16 35 H 0.08 0.61 3.98 -51.93 -0.21 0.40 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.85 5.03 -51.93 -0.26 0.59 16 38 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.09 1.86 7.04 -51.93 -0.37 1.49 16 LS Contribution 328.81 15.07 4.96 4.96 Total: -1.00 -32.98 328.81 -8.03 -41.01 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -6.48 Total: 9.39 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -0.24 Total: 2.72 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.06 Total: -54.34 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -1.31 Total: -21.03 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.98 -8.03 -41.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999401044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.803 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds