Wall clock time and date at job start Tue Mar 31 2020 05:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.52551 * 2 1 4 4 O 1.43072 * 109.58216 * 239.83012 * 2 1 3 5 5 C 1.43074 * 113.59111 * 182.11319 * 4 2 1 6 6 C 1.53143 * 109.15183 * 57.95399 * 5 4 2 7 7 O 1.43197 * 109.18805 * 304.68165 * 6 5 4 8 8 C 1.43077 * 113.51275 * 57.90852 * 7 6 5 9 9 H 1.09004 * 109.52463 * 182.14682 * 8 7 6 10 10 C 1.50699 * 109.52795 * 62.01650 * 8 7 6 11 11 O 1.21284 * 119.99585 * 321.40677 * 10 8 7 12 12 N 1.34776 * 120.00449 * 141.40029 * 10 8 7 13 13 C 1.46500 * 119.99678 * 3.37029 * 12 10 8 14 14 C 1.46494 * 119.99994 * 183.37026 * 12 10 8 15 15 H 1.08997 * 110.89165 * 356.11942 * 14 12 10 16 16 C 1.55158 * 111.00224 * 120.00505 * 14 12 10 17 17 C 1.54322 * 102.94845 * 82.60713 * 16 14 12 18 18 N 1.47027 * 107.26646 * 22.19353 * 17 16 14 19 19 C 1.36940 * 125.64311 * 181.02725 * 18 17 16 20 20 H 1.08008 * 119.99579 * 185.68655 * 19 18 17 21 21 C 1.38810 * 120.00179 * 5.68043 * 19 18 17 22 22 N 1.31617 * 120.00232 * 6.86993 * 21 19 18 23 23 Si 1.86802 * 119.99696 * 186.86448 * 21 19 18 24 24 H 1.48504 * 109.46909 * 84.99877 * 23 21 19 25 25 H 1.48494 * 109.47343 * 324.99521 * 23 21 19 26 26 H 1.48504 * 109.47010 * 204.99126 * 23 21 19 27 27 C 1.47422 * 108.70426 * 1.28545 * 18 17 16 28 28 H 1.08998 * 109.47600 * 305.86372 * 1 2 3 29 29 H 1.09000 * 109.46697 * 65.86551 * 1 2 3 30 30 H 1.08996 * 109.46725 * 185.85769 * 1 2 3 31 31 H 1.09001 * 109.52056 * 177.85782 * 5 4 2 32 32 H 1.08997 * 109.52724 * 297.98503 * 5 4 2 33 33 H 1.09004 * 109.51977 * 64.58738 * 6 5 4 34 34 H 1.08998 * 109.52458 * 184.71824 * 6 5 4 35 35 H 1.09000 * 109.47233 * 264.62647 * 13 12 10 36 36 H 1.09004 * 109.47433 * 24.62289 * 13 12 10 37 37 H 1.09001 * 109.47260 * 144.62258 * 13 12 10 38 38 H 1.09007 * 110.72064 * 324.23737 * 16 14 12 39 39 H 1.09009 * 110.86810 * 201.04481 * 16 14 12 40 40 H 1.08994 * 109.88003 * 262.77751 * 17 16 14 41 41 H 1.08996 * 110.01026 * 141.67860 * 17 16 14 42 42 H 0.96996 * 119.99860 * 179.97438 * 22 21 19 43 43 H 1.08999 * 110.36628 * 94.48704 * 27 18 17 44 44 H 1.08999 * 110.36765 * 216.80533 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 8 2.0095 -0.6774 -1.1654 5 6 3.4359 -0.7697 -1.2278 6 6 3.9477 -1.4941 0.0206 7 8 3.4683 -0.8166 1.1876 8 6 2.0418 -0.7244 1.2484 9 1 1.7504 -0.1665 2.1384 10 6 1.4495 -2.1089 1.3056 11 8 1.9364 -3.0043 0.6482 12 7 0.3789 -2.3522 2.0874 13 6 -0.2543 -1.2557 2.8242 14 6 -0.1515 -3.7131 2.2002 15 1 0.3855 -4.3955 1.5414 16 6 -0.1055 -4.2077 3.6702 17 6 -1.3848 -3.5974 4.2805 18 7 -2.3063 -3.3152 3.1702 19 6 -3.5478 -2.7493 3.2878 20 1 -4.1876 -2.6664 2.4215 21 6 -3.9840 -2.2826 4.5201 22 7 -3.1582 -2.2590 5.5448 23 14 -5.7429 -1.6877 4.7242 24 1 -6.6273 -2.8461 5.0096 25 1 -6.1882 -1.0211 3.4742 26 1 -5.8116 -0.7231 5.8512 27 6 -1.6751 -3.7479 1.9102 28 1 -0.3634 0.6020 0.8328 29 1 -0.3633 0.4202 -0.9379 30 1 -0.3632 -1.0223 0.1049 31 1 3.7262 -1.3281 -2.1178 32 1 3.8643 0.2317 -1.2704 33 1 3.5834 -2.5214 0.0206 34 1 5.0377 -1.4940 0.0207 35 1 0.1445 -1.2212 3.8380 36 1 -0.0472 -0.3118 2.3200 37 1 -1.3315 -1.4182 2.8628 38 1 0.7822 -3.8291 4.1769 39 1 -0.1383 -5.2964 3.7147 40 1 -1.1411 -2.6731 4.8042 41 1 -1.8427 -4.3052 4.9715 42 1 -3.4630 -1.9325 6.4058 43 1 -1.9920 -4.7591 1.6549 44 1 -1.9233 -3.0569 1.1047 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033159166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:27 Heat of formation + Delta-G solvation = -70.114373 kcal Electronic energy + Delta-G solvation = -26760.543784 eV Core-core repulsion = 23101.153995 eV Total energy + Delta-G solvation = -3659.389789 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.00829 -38.93300 -37.21887 -36.02635 -34.59065 -33.11928 -31.90591 -29.38990 -29.02092 -27.97843 -27.04442 -25.84471 -24.32921 -23.31224 -22.45938 -20.15908 -20.10365 -18.54448 -17.51258 -17.05538 -17.00182 -16.31329 -16.13215 -15.77821 -15.14341 -14.69237 -14.53147 -14.24728 -13.84756 -13.56506 -13.27299 -12.95846 -12.73404 -12.59006 -12.19221 -12.06956 -11.98860 -11.84860 -11.76229 -11.65377 -11.25839 -11.16660 -10.97643 -10.89069 -10.75886 -10.53268 -10.19286 -10.16390 -9.95623 -9.72363 -9.53732 -8.76095 -8.61737 -8.18152 -6.85853 -5.78074 -3.15039 2.71101 3.22459 3.35309 3.41463 3.42311 3.63550 3.72737 4.43086 4.43771 4.59390 4.82533 4.96644 5.07141 5.12588 5.26491 5.31179 5.34605 5.41498 5.47224 5.48690 5.63303 5.68000 5.73246 5.85509 5.86745 6.00700 6.12671 6.19842 6.22795 6.32152 6.50732 6.52348 6.61682 6.78423 6.86460 6.99540 7.06747 7.43618 7.58769 7.75175 7.79430 8.17789 8.41570 9.13157 9.73380 10.39115 11.30435 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.025101 B = 0.004557 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.212046 B = 6143.284709 C = 6599.934278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.070 3.930 3 H 0.076 0.924 4 O -0.366 6.366 5 C 0.033 3.967 6 C -0.007 4.007 7 O -0.359 6.359 8 C 0.039 3.961 9 H 0.131 0.869 10 C 0.500 3.500 11 O -0.540 6.540 12 N -0.581 5.581 13 C 0.054 3.946 14 C 0.123 3.877 15 H 0.098 0.902 16 C -0.155 4.155 17 C 0.168 3.832 18 N -0.601 5.601 19 C -0.232 4.232 20 H 0.077 0.923 21 C -0.003 4.003 22 N -0.917 5.917 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.282 1.282 26 H -0.291 1.291 27 C 0.126 3.874 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.124 0.876 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.028 0.972 42 H 0.253 0.747 43 H 0.031 0.969 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.336 4.530 -8.745 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.011 3.989 3 H 0.094 0.906 4 O -0.285 6.285 5 C -0.044 4.044 6 C -0.083 4.083 7 O -0.276 6.276 8 C -0.022 4.022 9 H 0.148 0.852 10 C 0.288 3.712 11 O -0.419 6.419 12 N -0.313 5.313 13 C -0.088 4.088 14 C 0.019 3.981 15 H 0.116 0.884 16 C -0.194 4.194 17 C 0.044 3.956 18 N -0.328 5.328 19 C -0.360 4.360 20 H 0.095 0.905 21 C -0.200 4.200 22 N -0.564 5.564 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.207 1.207 26 H -0.217 1.217 27 C -0.001 4.001 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.142 0.858 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.452 4.171 -8.899 15.091 hybrid contribution -0.879 0.317 0.386 1.011 sum 10.573 4.488 -8.513 14.296 Atomic orbital electron populations 1.22019 0.91582 1.04302 1.03402 1.22591 0.96453 0.95168 0.84699 0.90624 1.88144 1.20679 1.78398 1.41305 1.23138 0.81788 1.00123 0.99374 1.23858 0.99522 1.00267 0.84605 1.88183 1.17846 1.77986 1.43622 1.22977 0.83202 0.94684 1.01355 0.85182 1.21019 0.80417 0.90428 0.79361 1.90479 1.60552 1.47055 1.43855 1.47783 1.28839 1.09626 1.45085 1.22458 1.03724 0.87430 0.95198 1.22267 0.95657 0.82535 0.97688 0.88404 1.23222 1.00583 1.00177 0.95399 1.21315 0.85776 0.98978 0.89567 1.44575 1.16303 1.71461 1.00468 1.19009 0.90095 1.31924 0.95012 0.90518 1.24770 0.98140 1.01058 0.96041 1.69942 1.33400 1.51782 1.01249 0.86186 0.84447 0.78119 0.77272 1.21638 1.20730 1.21729 1.21935 0.89635 0.97764 0.90783 0.89885 0.90960 0.90815 0.88040 0.92945 0.87117 0.88573 0.92661 0.92385 0.85826 0.91944 0.91549 0.91457 0.95376 0.93681 0.95116 0.93729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 8.20 37.16 0.30 -1.65 16 2 C 0.07 0.90 3.15 -26.66 -0.08 0.82 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 4 O -0.37 -5.30 10.06 -50.84 -0.51 -5.81 16 5 C 0.03 0.38 7.05 37.23 0.26 0.65 16 6 C -0.01 -0.09 6.58 37.23 0.24 0.16 16 7 O -0.36 -5.30 10.66 -60.66 -0.65 -5.95 16 8 C 0.04 0.56 2.87 -27.81 -0.08 0.48 16 9 H 0.13 1.64 6.20 -51.93 -0.32 1.32 16 10 C 0.50 8.48 5.34 -10.99 -0.06 8.42 16 11 O -0.54 -10.34 12.76 -12.28 -0.16 -10.50 16 12 N -0.58 -9.96 2.49 -171.35 -0.43 -10.38 16 13 C 0.05 0.90 7.51 59.85 0.45 1.35 16 14 C 0.12 2.24 3.66 -65.66 -0.24 2.00 16 15 H 0.10 1.79 7.02 -51.93 -0.36 1.43 16 16 C -0.15 -2.88 6.47 -24.90 -0.16 -3.04 16 17 C 0.17 3.80 4.43 -3.06 -0.01 3.79 16 18 N -0.60 -14.04 1.89 -169.93 -0.32 -14.36 16 19 C -0.23 -5.97 9.79 -15.06 -0.15 -6.12 16 20 H 0.08 1.94 7.84 -52.48 -0.41 1.53 16 21 C 0.00 -0.08 5.45 -17.43 -0.10 -0.18 16 22 N -0.92 -24.96 10.44 55.49 0.58 -24.38 16 23 Si 0.91 20.97 29.56 -169.99 -5.02 15.94 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.13 2.51 6.39 -2.41 -0.02 2.50 16 28 H 0.08 0.90 6.59 -51.93 -0.34 0.56 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.11 6.25 -51.93 -0.32 0.78 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.11 1.73 5.07 -51.93 -0.26 1.47 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.94 7.61 -51.93 -0.40 0.55 16 36 H 0.06 0.79 3.56 -51.93 -0.18 0.60 16 37 H 0.12 2.51 5.12 -51.93 -0.27 2.24 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 40 H 0.07 1.65 5.74 -51.93 -0.30 1.35 16 41 H 0.03 0.71 7.95 -51.93 -0.41 0.30 16 42 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -29.58 326.63 -7.74 -37.32 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.53 Total: 4.02 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 0.37 Total: 9.18 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.17 Total: -49.13 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -1.32 Total: -22.26 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.58 -7.74 -37.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033159166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.792 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds