Wall clock time and date at job start Tue Mar 31 2020 05:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.45250 * 2 1 4 4 C 1.54510 * 110.62938 * 237.31478 * 2 1 3 5 5 C 1.54476 * 104.06174 * 241.29497 * 4 2 1 6 6 O 1.44431 * 104.80319 * 23.97758 * 5 4 2 7 7 C 1.44430 * 105.27339 * 319.48852 * 6 5 4 8 8 H 1.09001 * 110.46301 * 281.63137 * 7 6 5 9 9 C 1.50700 * 110.36879 * 159.34267 * 7 6 5 10 10 O 1.21280 * 120.00065 * 359.62044 * 9 7 6 11 11 N 1.34769 * 119.99688 * 179.61660 * 9 7 6 12 12 C 1.46503 * 120.00010 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.47322 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.51088 * 59.89906 * 13 12 11 15 15 C 1.53297 * 109.51102 * 179.97438 * 13 12 11 16 16 N 1.47154 * 108.38081 * 172.22212 * 15 13 12 17 17 C 1.36944 * 120.97555 * 129.44397 * 16 15 13 18 18 H 1.07997 * 120.00467 * 333.93614 * 17 16 15 19 19 C 1.38813 * 119.99824 * 153.94390 * 17 16 15 20 20 N 1.31618 * 120.00208 * 142.44593 * 19 17 16 21 21 Si 1.86803 * 119.99800 * 322.44895 * 19 17 16 22 22 H 1.48490 * 109.47120 * 270.00140 * 21 19 17 23 23 H 1.48499 * 109.47214 * 30.00170 * 21 19 17 24 24 H 1.48504 * 109.47174 * 150.00060 * 21 19 17 25 25 C 1.47143 * 118.04021 * 309.72141 * 16 15 13 26 26 C 1.52877 * 108.61161 * 50.22169 * 25 16 15 27 27 O 1.42959 * 109.29868 * 307.93960 * 26 25 16 28 28 H 1.08996 * 109.47366 * 297.39614 * 1 2 3 29 29 H 1.09001 * 109.47153 * 57.39821 * 1 2 3 30 30 H 1.09001 * 109.46827 * 177.39864 * 1 2 3 31 31 H 1.08997 * 110.51158 * 359.93872 * 4 2 1 32 32 H 1.08999 * 110.50831 * 122.51360 * 4 2 1 33 33 H 1.08994 * 110.37123 * 142.80780 * 5 4 2 34 34 H 1.08999 * 110.37667 * 265.03852 * 5 4 2 35 35 H 0.97002 * 120.00669 * 359.97438 * 11 9 7 36 36 H 1.08998 * 109.47085 * 60.00287 * 12 11 9 37 37 H 1.09003 * 109.47173 * 299.99953 * 12 11 9 38 38 H 1.08997 * 109.68092 * 52.50467 * 15 13 12 39 39 H 1.08997 * 109.71346 * 291.96820 * 15 13 12 40 40 H 0.97001 * 119.99631 * 354.82865 * 20 19 17 41 41 H 1.09001 * 109.68346 * 170.00549 * 25 16 15 42 42 H 1.09003 * 109.68083 * 290.55524 * 25 16 15 43 43 H 1.08998 * 109.58915 * 187.92183 * 26 25 16 44 44 H 1.09010 * 109.40547 * 67.84362 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0743 -0.7809 -1.2170 5 6 2.8801 -1.9398 -0.5895 6 8 2.3101 -2.1158 0.7258 7 6 2.0713 -0.7794 1.2189 8 1 3.0000 -0.3323 1.5733 9 6 1.0466 -0.8033 2.3236 10 8 0.5493 -1.8548 2.6669 11 7 0.6829 0.3440 2.9301 12 6 -0.3129 0.3208 4.0045 13 6 -0.5435 1.7439 4.5170 14 1 -0.9024 2.3711 3.7009 15 6 -1.5858 1.7208 5.6408 16 7 -1.6515 3.0629 6.2405 17 6 -2.8511 3.7013 6.4098 18 1 -3.6853 3.4629 5.7666 19 6 -2.9949 4.6551 7.4081 20 7 -3.7223 5.7304 7.1911 21 14 -2.1560 4.4125 9.0594 22 1 -3.0666 3.6780 9.9740 23 1 -0.9079 3.6305 8.8704 24 1 -1.8267 5.7362 9.6466 25 6 -0.3896 3.7014 6.6472 26 6 0.5939 3.6257 5.4792 27 8 0.6838 2.2736 5.0240 28 1 -0.3634 0.4728 0.9124 29 1 -0.3633 0.5537 -0.8657 30 1 -0.3633 -1.0266 -0.0466 31 1 1.2535 -1.1691 -1.8200 32 1 2.7224 -0.1449 -1.8200 33 1 2.7603 -2.8484 -1.1796 34 1 3.9343 -1.6726 -0.5153 35 1 1.0809 1.1850 2.6559 36 1 0.0475 -0.3056 4.8205 37 1 -1.2502 -0.0837 3.6225 38 1 -1.2926 0.9941 6.3985 39 1 -2.5604 1.4527 5.2329 40 1 -4.0959 5.8937 6.3110 41 1 -0.5724 4.7446 6.9048 42 1 0.0260 3.1776 7.5080 43 1 1.5765 3.9659 5.8063 44 1 0.2408 4.2608 4.6666 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035508790.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:29 Heat of formation + Delta-G solvation = -96.732499 kcal Electronic energy + Delta-G solvation = -25146.527198 eV Core-core repulsion = 21485.983161 eV Total energy + Delta-G solvation = -3660.544038 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.72971 -39.06545 -38.27706 -35.10976 -34.50399 -33.72222 -31.82647 -31.35755 -30.19189 -27.90218 -27.09989 -25.48296 -23.34252 -23.01359 -21.86871 -21.46332 -20.36204 -19.67732 -17.59386 -17.39052 -17.09925 -16.35267 -16.19493 -15.50230 -15.32834 -15.15326 -14.82485 -14.32938 -14.00363 -13.89015 -13.84576 -13.55423 -13.41267 -13.06619 -12.86876 -12.63902 -12.39209 -12.02980 -11.78646 -11.64167 -11.54553 -11.27784 -11.13752 -10.91897 -10.85574 -10.56275 -10.20278 -10.02299 -9.81748 -9.67771 -9.47200 -9.28071 -9.03875 -8.30085 -7.10963 -6.47320 -3.34204 2.55005 2.81327 3.45946 3.53820 3.67129 3.76647 4.01506 4.09622 4.34617 4.43576 4.57997 4.70172 4.74957 4.77519 4.93451 5.05477 5.13880 5.21671 5.29482 5.30910 5.33692 5.35950 5.54948 5.59124 5.61406 5.68676 5.72414 5.80632 5.90790 5.96667 6.00147 6.12979 6.19464 6.34670 6.44557 6.48940 6.55918 6.77207 7.45669 7.56656 7.91119 8.17772 8.33215 8.90698 9.52095 10.11716 10.93589 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.035039 B = 0.003080 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.917766 B = 9089.943440 C = 9202.027939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 H 0.093 0.907 4 C -0.150 4.150 5 C 0.041 3.959 6 O -0.343 6.343 7 C 0.058 3.942 8 H 0.095 0.905 9 C 0.523 3.477 10 O -0.524 6.524 11 N -0.719 5.719 12 C 0.132 3.868 13 C 0.065 3.935 14 H 0.061 0.939 15 C 0.120 3.880 16 N -0.600 5.600 17 C -0.368 4.368 18 H 0.067 0.933 19 C 0.007 3.993 20 N -0.893 5.893 21 Si 1.012 2.988 22 H -0.296 1.296 23 H -0.269 1.269 24 H -0.293 1.293 25 C 0.107 3.893 26 C 0.046 3.954 27 O -0.387 6.387 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.404 0.596 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.032 0.968 39 H 0.068 0.932 40 H 0.268 0.732 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.086 0.914 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.875 -8.911 -16.089 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.134 4.134 3 H 0.111 0.889 4 C -0.188 4.188 5 C -0.036 4.036 6 O -0.261 6.261 7 C -0.003 4.003 8 H 0.112 0.888 9 C 0.307 3.693 10 O -0.399 6.399 11 N -0.372 5.372 12 C 0.008 3.992 13 C 0.005 3.995 14 H 0.079 0.921 15 C -0.007 4.007 16 N -0.325 5.325 17 C -0.495 4.495 18 H 0.084 0.916 19 C -0.198 4.198 20 N -0.529 5.529 21 Si 0.841 3.159 22 H -0.224 1.224 23 H -0.195 1.195 24 H -0.219 1.219 25 C -0.019 4.019 26 C -0.032 4.032 27 O -0.306 6.306 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.238 0.762 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.104 0.896 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.734 -9.331 -14.205 21.851 hybrid contribution -0.193 0.169 -1.643 1.663 sum 13.541 -9.161 -15.848 22.769 Atomic orbital electron populations 1.22035 0.93421 1.03023 1.02984 1.22489 0.97723 0.99876 0.93309 0.88918 1.23047 1.00683 0.97325 0.97742 1.23483 0.96829 0.99260 0.84017 1.89284 1.82780 1.23346 1.30706 1.22972 0.97774 0.85548 0.94000 0.88788 1.20003 0.82709 0.84057 0.82491 1.90729 1.54559 1.30478 1.64134 1.45870 1.44144 1.09420 1.37782 1.21426 0.92050 0.96329 0.89376 1.22825 0.87015 0.92717 0.96941 0.92068 1.21505 0.96792 0.88829 0.93562 1.44333 1.02526 1.13104 1.72497 1.20017 0.90858 1.21971 1.16622 0.91552 1.26096 0.98861 0.92932 1.01904 1.70903 1.34634 1.21357 1.26011 0.84707 0.77124 0.75916 0.78124 1.22377 1.19453 1.21938 1.21956 0.86660 0.98447 0.94809 1.23085 0.99993 0.82473 0.97681 1.87796 1.31687 1.28883 1.82222 0.91318 0.91829 0.91815 0.90136 0.90112 0.88668 0.91969 0.76194 0.90585 0.90029 0.95023 0.91340 0.92211 0.90768 0.94263 0.89587 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 8.11 37.16 0.30 -1.16 16 2 C -0.11 -0.92 3.61 -89.06 -0.32 -1.24 16 3 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.15 -0.99 6.74 -25.16 -0.17 -1.16 16 5 C 0.04 0.32 7.63 37.93 0.29 0.61 16 6 O -0.34 -4.30 10.91 -54.45 -0.59 -4.89 16 7 C 0.06 0.62 3.63 -27.11 -0.10 0.52 16 8 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 9 C 0.52 7.18 5.53 -10.99 -0.06 7.11 16 10 O -0.52 -9.51 16.55 -13.66 -0.23 -9.73 16 11 N -0.72 -8.86 4.20 -60.29 -0.25 -9.11 16 12 C 0.13 1.87 5.37 -4.04 -0.02 1.85 16 13 C 0.06 1.04 2.86 -26.57 -0.08 0.97 16 14 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 15 C 0.12 2.35 6.03 -3.53 -0.02 2.33 16 16 N -0.60 -14.03 2.79 -172.09 -0.48 -14.51 16 17 C -0.37 -10.01 9.75 -15.06 -0.15 -10.15 16 18 H 0.07 1.93 8.06 -52.49 -0.42 1.50 16 19 C 0.01 0.19 4.80 -17.43 -0.08 0.11 16 20 N -0.89 -26.61 13.70 55.49 0.76 -25.85 16 21 Si 1.01 24.67 27.07 -169.99 -4.60 20.07 16 22 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.27 -6.04 4.72 56.52 0.27 -5.78 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C 0.11 2.26 4.57 -3.75 -0.02 2.24 16 26 C 0.05 0.78 6.97 37.09 0.26 1.04 16 27 O -0.39 -6.50 10.14 -35.23 -0.36 -6.86 16 28 H 0.07 0.70 6.10 -51.93 -0.32 0.39 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.53 7.74 -51.93 -0.40 0.13 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.40 4.18 8.36 -40.82 -0.34 3.84 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.32 7.96 -51.93 -0.41 0.90 16 40 H 0.27 7.90 8.73 -40.82 -0.36 7.54 16 41 H 0.07 1.66 6.01 -51.93 -0.31 1.35 16 42 H 0.04 0.84 6.47 -51.93 -0.34 0.51 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 LS Contribution 345.15 15.07 5.20 5.20 Total: -1.00 -33.43 345.15 -8.04 -41.47 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.33 Total: 1.13 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -0.17 Total: 3.07 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.03 Total: -49.47 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -1.18 Total: -21.48 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -4.60 Total: 20.07 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.43 -8.04 -41.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035508790.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.259 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds