Wall clock time and date at job start Tue Mar 31 2020 05:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.55219 * 2 1 4 4 C 1.54995 * 110.61892 * 237.11884 * 2 1 3 5 5 C 1.54817 * 102.08815 * 204.31838 * 4 2 1 6 6 C 1.54099 * 104.19078 * 20.87998 * 5 4 2 7 7 H 1.08999 * 109.87507 * 242.45743 * 6 5 4 8 8 C 1.50699 * 109.87684 * 121.45227 * 6 5 4 9 9 O 1.21276 * 119.99939 * 244.99901 * 8 6 5 10 10 N 1.34781 * 119.99901 * 65.00512 * 8 6 5 11 11 C 1.46500 * 120.00032 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.47175 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.51127 * 59.99862 * 12 11 10 14 14 C 1.53289 * 109.51056 * 180.10213 * 12 11 10 15 15 N 1.47155 * 108.38207 * 172.22716 * 14 12 11 16 16 C 1.36943 * 120.97917 * 129.44260 * 15 14 12 17 17 H 1.08004 * 119.99498 * 206.23957 * 16 15 14 18 18 C 1.38803 * 120.00350 * 26.23814 * 16 15 14 19 19 N 1.31625 * 119.99975 * 16.91562 * 18 16 15 20 20 Si 1.86795 * 120.00044 * 196.91025 * 18 16 15 21 21 H 1.48497 * 109.47323 * 60.00344 * 20 18 16 22 22 H 1.48501 * 109.47212 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47531 * 299.99851 * 20 18 16 24 24 C 1.47142 * 118.03544 * 309.46200 * 15 14 12 25 25 C 1.53296 * 108.38577 * 50.53743 * 24 15 14 26 26 O 1.42959 * 109.50943 * 299.89896 * 12 11 10 27 27 O 1.43744 * 107.29199 * 2.03064 * 6 5 4 28 28 H 1.09004 * 109.47109 * 182.88228 * 1 2 3 29 29 H 1.08997 * 109.47382 * 302.88018 * 1 2 3 30 30 H 1.08996 * 109.47356 * 62.88395 * 1 2 3 31 31 H 1.08997 * 110.90816 * 86.12001 * 4 2 1 32 32 H 1.08992 * 110.90653 * 322.51272 * 4 2 1 33 33 H 1.08999 * 110.48555 * 262.20318 * 5 4 2 34 34 H 1.09000 * 110.48341 * 139.56206 * 5 4 2 35 35 H 0.97002 * 119.99797 * 359.71755 * 10 8 6 36 36 H 1.09004 * 109.46976 * 299.99720 * 11 10 8 37 37 H 1.09003 * 109.46706 * 59.99583 * 11 10 8 38 38 H 1.08999 * 109.67942 * 291.94761 * 14 12 11 39 39 H 1.08990 * 109.68487 * 52.50248 * 14 12 11 40 40 H 0.96999 * 119.99934 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.68429 * 170.25862 * 24 15 14 42 42 H 1.08996 * 109.68525 * 290.77249 * 24 15 14 43 43 H 1.09005 * 109.51511 * 67.62083 * 25 24 15 44 44 H 1.09007 * 109.51292 * 187.77071 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2183 5 6 3.4811 -1.2121 -0.7267 6 6 3.3875 -1.1217 0.8088 7 1 4.0897 -0.3751 1.1796 8 6 3.6961 -2.4638 1.4208 9 8 2.8365 -3.0648 2.0296 10 7 4.9276 -2.9962 1.2917 11 6 5.2278 -4.3006 1.8872 12 6 6.6834 -4.6714 1.5959 13 1 7.3438 -3.9167 2.0230 14 6 6.9978 -6.0373 2.2163 15 7 8.3352 -6.4547 1.7663 16 6 9.2818 -6.8733 2.6630 17 1 10.3310 -6.7729 2.4269 18 6 8.8931 -7.4266 3.8752 19 7 7.6596 -7.8564 4.0370 20 14 10.1205 -7.5613 5.2768 21 1 10.6071 -6.2063 5.6407 22 1 9.4620 -8.1836 6.4534 23 1 11.2683 -8.4016 4.8508 24 6 8.6255 -6.4085 0.3246 25 6 8.2317 -5.0244 -0.2038 26 8 6.8854 -4.7377 0.1822 27 8 2.0416 -0.7347 1.1327 28 1 -0.3633 -1.0264 0.0517 29 1 -0.3634 0.5579 0.8630 30 1 -0.3634 0.4684 -0.9147 31 1 2.1483 -0.1453 -2.0959 32 1 1.4566 -1.6600 -1.4265 33 1 4.2402 -0.5267 -1.1036 34 1 3.7009 -2.2339 -1.0361 35 1 5.6140 -2.5173 0.8014 36 1 5.0736 -4.2521 2.9652 37 1 4.5683 -5.0557 1.4594 38 1 6.9842 -5.9586 3.3034 39 1 6.2567 -6.7675 1.8914 40 1 7.3878 -8.2427 4.8842 41 1 9.6898 -6.5756 0.1588 42 1 8.0488 -7.1765 -0.1908 43 1 8.8984 -4.2711 0.2161 44 1 8.3088 -5.0143 -1.2911 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035513010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:41 Heat of formation + Delta-G solvation = -129.502918 kcal Electronic energy + Delta-G solvation = -24854.595352 eV Core-core repulsion = 21192.630282 eV Total energy + Delta-G solvation = -3661.965070 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43903 -40.25810 -39.38338 -36.47810 -35.87274 -33.38381 -33.25587 -33.10239 -32.02891 -29.20471 -28.18770 -26.56550 -25.06004 -23.66562 -23.07834 -22.17438 -21.73237 -21.11042 -18.97412 -18.50862 -17.69358 -17.49070 -17.28878 -17.02469 -16.34255 -16.11906 -15.78674 -15.53611 -15.47248 -15.03716 -14.88295 -14.69389 -14.58768 -14.31949 -13.80829 -13.39643 -13.27633 -13.18932 -13.00105 -12.66241 -12.64544 -12.54419 -12.45673 -12.20793 -12.12861 -11.88678 -11.85155 -11.79215 -11.32534 -11.11664 -10.82792 -10.56486 -10.48740 -10.18743 -8.76978 -7.92421 -5.40180 1.45933 1.48304 1.52393 1.55477 1.85940 2.46796 2.76320 2.96068 3.22478 3.46094 3.49998 3.67333 3.87908 3.92669 4.03374 4.05288 4.21815 4.25733 4.34100 4.44818 4.46277 4.50887 4.58505 4.60500 4.67382 4.78887 4.80973 4.91283 4.96308 4.97722 5.02456 5.06606 5.18809 5.22277 5.27768 5.31759 5.51293 5.58704 5.88442 6.25097 6.31373 6.51801 7.03962 7.18576 7.73363 8.26737 9.13279 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.027628 B = 0.003079 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.215490 B = 9092.403440 C = 9752.404422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 H 0.096 0.904 4 C -0.146 4.146 5 C -0.143 4.143 6 C 0.064 3.936 7 H 0.124 0.876 8 C 0.504 3.496 9 O -0.581 6.581 10 N -0.702 5.702 11 C 0.143 3.857 12 C 0.079 3.921 13 H 0.068 0.932 14 C 0.159 3.841 15 N -0.614 5.614 16 C -0.267 4.267 17 H 0.076 0.924 18 C -0.052 4.052 19 N -0.937 5.937 20 Si 0.971 3.029 21 H -0.274 1.274 22 H -0.297 1.297 23 H -0.274 1.274 24 C 0.100 3.900 25 C 0.058 3.942 26 O -0.388 6.388 27 O -0.385 6.385 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.064 0.936 33 H 0.123 0.877 34 H 0.073 0.927 35 H 0.418 0.582 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.066 0.934 39 H -0.002 1.002 40 H 0.251 0.749 41 H 0.073 0.927 42 H 0.014 0.986 43 H 0.056 0.944 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 19.253 -13.344 24.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.003 3.997 3 H 0.114 0.886 4 C -0.184 4.184 5 C -0.181 4.181 6 C 0.003 3.997 7 H 0.141 0.859 8 C 0.291 3.709 9 O -0.460 6.460 10 N -0.356 5.356 11 C 0.019 3.981 12 C 0.020 3.980 13 H 0.085 0.915 14 C 0.032 3.968 15 N -0.339 5.339 16 C -0.396 4.396 17 H 0.093 0.907 18 C -0.247 4.247 19 N -0.582 5.582 20 Si 0.799 3.201 21 H -0.200 1.200 22 H -0.223 1.223 23 H -0.199 1.199 24 C -0.025 4.025 25 C -0.020 4.020 26 O -0.307 6.307 27 O -0.304 6.304 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.083 0.917 33 H 0.142 0.858 34 H 0.091 0.909 35 H 0.255 0.745 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.016 0.984 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.032 0.968 43 H 0.074 0.926 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.025 18.711 -12.718 23.690 hybrid contribution 0.943 -0.889 1.067 1.679 sum -6.082 17.822 -11.651 22.144 Atomic orbital electron populations 1.21809 0.92660 1.02294 1.03619 1.23527 0.95961 0.96047 0.84165 0.88585 1.23218 0.95036 1.00920 0.99183 1.23006 1.00082 1.04330 0.90641 1.22746 0.87256 0.92549 0.97134 0.85904 1.21287 0.81727 0.88276 0.79646 1.90696 1.47877 1.63941 1.43493 1.45674 1.12974 1.20678 1.56231 1.21086 0.94149 0.84806 0.98106 1.22711 0.94583 0.98012 0.82743 0.91455 1.21080 0.85742 0.91020 0.98970 1.44350 1.11633 1.76056 1.01854 1.19530 0.88772 1.33881 0.97441 0.90681 1.25868 0.98414 0.98166 1.02297 1.70183 1.19380 1.43724 1.24957 0.85284 0.78342 0.78042 0.78450 1.20027 1.22296 1.19926 1.21847 0.99779 0.96420 0.84438 1.23094 0.82667 0.95419 1.00810 1.87784 1.29581 1.91847 1.21523 1.88997 1.26941 1.73959 1.40525 0.93550 0.92120 0.88286 0.86616 0.91737 0.85829 0.90868 0.74490 0.90969 0.92644 0.91574 0.98406 0.93975 0.90864 0.96789 0.92564 0.85899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.66 71.98 0.70 -1.50 16 2 C 0.06 0.97 3.97 31.28 0.12 1.09 16 3 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 4 C -0.15 -1.96 6.59 31.90 0.21 -1.75 16 5 C -0.14 -2.07 6.61 31.59 0.21 -1.86 16 6 C 0.06 1.37 3.84 30.22 0.12 1.49 16 7 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 8 C 0.50 15.46 6.95 87.66 0.61 16.07 16 9 O -0.58 -24.34 16.53 15.70 0.26 -24.08 16 10 N -0.70 -19.38 5.42 -463.05 -2.51 -21.89 16 11 C 0.14 5.01 5.37 86.38 0.46 5.47 16 12 C 0.08 2.91 2.86 30.69 0.09 3.00 16 13 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 14 C 0.16 7.68 4.73 86.35 0.41 8.09 16 15 N -0.61 -30.54 3.05 -697.59 -2.13 -32.66 16 16 C -0.27 -14.37 9.65 84.03 0.81 -13.56 16 17 H 0.08 3.86 7.88 -2.91 -0.02 3.84 16 18 C -0.05 -2.88 4.95 84.86 0.42 -2.46 16 19 N -0.94 -55.69 11.14 21.65 0.24 -55.45 16 20 Si 0.97 44.30 29.59 68.60 2.03 46.33 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 24 C 0.10 3.98 6.74 86.36 0.58 4.57 16 25 C 0.06 1.75 6.98 72.08 0.50 2.26 16 26 O -0.39 -13.14 10.13 -148.98 -1.51 -14.65 16 27 O -0.38 -10.15 10.44 -130.26 -1.36 -11.51 16 28 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 1.07 8.06 -2.39 -0.02 1.05 16 33 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 1.28 7.69 -2.39 -0.02 1.26 16 35 H 0.42 8.78 8.35 -92.71 -0.77 8.00 16 36 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.07 3.59 6.14 -2.39 -0.01 3.57 16 39 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 40 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 41 H 0.07 2.70 7.96 -2.39 -0.02 2.68 16 42 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.12 2.82 8.14 -2.38 -0.02 2.80 16 Total: -1.00 -75.72 354.91 0.47 -75.25 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.21 Total: 17.76 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: 5.24 Total: 20.91 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -4.40 Total: -110.01 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -2.61 Total: -50.23 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -75.72 0.47 -75.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035513010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.257 kcal (2) G-P(sol) polarization free energy of solvation -75.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds