Wall clock time and date at job start Tue Mar 31 2020 05:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00337 * 2 1 4 4 C 1.50702 * 109.47182 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99909 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00038 * 180.02562 * 4 3 2 7 7 C 1.47159 * 121.05922 * 0.02562 * 6 4 3 8 8 C 1.53288 * 108.53081 * 231.11820 * 7 6 4 9 9 H 1.08998 * 109.51292 * 67.02723 * 8 7 6 10 10 C 1.53005 * 109.51271 * 187.12729 * 8 7 6 11 11 O 1.43098 * 109.21769 * 307.10216 * 8 7 6 12 12 C 1.42146 * 114.34849 * 61.19020 * 11 8 7 13 13 C 1.54510 * 110.32929 * 61.88851 * 12 11 8 14 14 C 1.55008 * 101.51173 * 84.02939 * 13 12 11 15 15 N 1.47475 * 104.90713 * 36.35808 * 14 13 12 16 16 C 1.36938 * 125.65180 * 155.98200 * 15 14 13 17 17 H 1.08001 * 119.99684 * 180.02562 * 16 15 14 18 18 C 1.38810 * 120.00234 * 0.02562 * 16 15 14 19 19 N 1.31618 * 120.00122 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99935 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47027 * 89.99945 * 20 18 16 22 22 H 1.48500 * 109.47009 * 210.00263 * 20 18 16 23 23 H 1.48502 * 109.47204 * 330.00015 * 20 18 16 24 24 C 1.47185 * 108.69153 * 335.97281 * 15 14 13 25 25 C 1.47296 * 121.06144 * 180.02562 * 6 4 3 26 26 H 1.08997 * 109.47391 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47269 * 300.00459 * 1 2 3 28 28 H 1.09007 * 109.46908 * 59.99672 * 1 2 3 29 29 H 1.09010 * 109.47072 * 59.99765 * 3 2 1 30 30 H 1.09001 * 109.47332 * 300.00138 * 3 2 1 31 31 H 1.08997 * 109.62662 * 350.83117 * 7 6 4 32 32 H 1.08997 * 109.62367 * 111.21100 * 7 6 4 33 33 H 1.09000 * 109.46780 * 60.00182 * 10 8 7 34 34 H 1.08997 * 109.47245 * 180.02562 * 10 8 7 35 35 H 1.08998 * 109.46983 * 300.00511 * 10 8 7 36 36 H 1.08998 * 111.01859 * 202.09108 * 13 12 11 37 37 H 1.09007 * 111.01690 * 325.93903 * 13 12 11 38 38 H 1.09006 * 110.35549 * 155.20779 * 14 13 12 39 39 H 1.08999 * 110.35408 * 277.50030 * 14 13 12 40 40 H 0.96993 * 120.00169 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.91865 * 242.16086 * 24 15 14 42 42 H 1.09008 * 109.91043 * 120.88268 * 24 15 14 43 43 H 1.09002 * 109.67941 * 250.32822 * 25 6 4 44 44 H 1.08999 * 109.67800 * 10.84029 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 8 4.0341 0.0914 0.0015 6 7 4.2766 2.2966 0.0013 7 6 3.6685 3.6367 0.0019 8 6 4.2980 4.4579 -1.1290 9 1 4.0070 4.0359 -2.0909 10 6 3.8140 5.9066 -1.0391 11 8 5.7228 4.4201 -1.0017 12 6 6.2854 3.1182 -1.0967 13 6 5.9907 2.5060 -2.4845 14 6 7.1365 3.1078 -3.3376 15 7 8.3017 3.1469 -2.4345 16 6 9.6142 3.1532 -2.8248 17 1 10.3982 3.1827 -2.0825 18 6 9.9371 3.1216 -4.1744 19 7 8.9818 3.0862 -5.0791 20 14 11.7277 3.1295 -4.7068 21 1 12.2193 1.7321 -4.8111 22 1 11.8483 3.7967 -6.0280 23 1 12.5389 3.8661 -3.7045 24 6 7.8199 3.1782 -1.0440 25 6 5.7469 2.2075 0.0013 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 2.5943 3.5513 -0.1618 32 1 3.8554 4.1230 0.9593 33 1 4.1070 6.3285 -0.0777 34 1 4.2617 6.4898 -1.8438 35 1 2.7284 5.9334 -1.1320 36 1 6.0557 1.4184 -2.4538 37 1 5.0169 2.8271 -2.8546 38 1 7.3443 2.4702 -4.1970 39 1 6.8768 4.1144 -3.6652 40 1 9.2074 3.0645 -6.0221 41 1 8.1390 4.1018 -0.5612 42 1 8.2066 2.3179 -0.4977 43 1 6.1341 2.5296 0.9680 44 1 6.0522 1.1792 -0.1922 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071110025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:31 Heat of formation + Delta-G solvation = -102.288507 kcal Electronic energy + Delta-G solvation = -25866.505065 eV Core-core repulsion = 22205.720101 eV Total energy + Delta-G solvation = -3660.784964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.89391 -40.22959 -38.39385 -37.95451 -35.87590 -34.80563 -32.95975 -31.27164 -30.67112 -29.41589 -27.71126 -27.25757 -26.51878 -25.05835 -23.23028 -21.98987 -21.13189 -20.21595 -19.01691 -18.54928 -18.08599 -17.44176 -17.29554 -16.87184 -16.69276 -16.15706 -15.78244 -15.71321 -15.65712 -15.05201 -14.88761 -14.36381 -14.24183 -13.98057 -13.76530 -13.58255 -13.18678 -13.12511 -13.02781 -12.93946 -12.81341 -12.74191 -12.31375 -12.27043 -12.22875 -12.00783 -11.89407 -11.63904 -11.48372 -10.96026 -10.81519 -10.76117 -10.74930 -9.58783 -8.94262 -7.79583 -5.24919 1.44508 1.46016 1.48726 1.57033 1.57960 2.45509 2.60628 2.90341 3.30785 3.42422 3.51799 3.56885 3.77836 3.85348 3.93274 4.03917 4.12927 4.20644 4.22089 4.36772 4.43152 4.48628 4.52158 4.59425 4.60174 4.71352 4.73078 4.77984 4.86181 4.89466 4.94106 5.05039 5.12221 5.21032 5.36414 5.42641 5.53667 5.72248 6.02144 6.24399 6.29241 6.33726 7.03157 7.06644 7.72788 8.37493 9.23065 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.022246 B = 0.003923 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.329855 B = 7136.461533 C = 7691.266788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.050 3.950 4 C 0.508 3.492 5 O -0.575 6.575 6 N -0.609 5.609 7 C 0.079 3.921 8 C 0.055 3.945 9 H 0.056 0.944 10 C -0.135 4.135 11 O -0.374 6.374 12 C 0.114 3.886 13 C -0.149 4.149 14 C 0.168 3.832 15 N -0.624 5.624 16 C -0.241 4.241 17 H 0.085 0.915 18 C -0.069 4.069 19 N -0.951 5.951 20 Si 0.985 3.015 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.268 1.268 24 C 0.147 3.853 25 C 0.108 3.892 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.132 0.868 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.109 0.891 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.070 0.930 39 H -0.014 1.014 40 H 0.247 0.753 41 H 0.036 0.964 42 H 0.048 0.952 43 H 0.091 0.909 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.841 3.355 12.578 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.029 4.029 4 C 0.297 3.703 5 O -0.453 6.453 6 N -0.344 5.344 7 C -0.042 4.042 8 C -0.002 4.002 9 H 0.074 0.926 10 C -0.192 4.192 11 O -0.294 6.294 12 C 0.073 3.927 13 C -0.188 4.188 14 C 0.043 3.957 15 N -0.350 5.350 16 C -0.369 4.369 17 H 0.103 0.897 18 C -0.261 4.261 19 N -0.600 5.600 20 Si 0.813 3.187 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.193 1.193 24 C 0.021 3.979 25 C -0.016 4.016 26 H 0.111 0.889 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.136 0.864 30 H 0.127 0.873 31 H 0.150 0.850 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.127 0.873 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.004 0.996 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.248 2.770 12.455 23.933 hybrid contribution 1.020 -0.071 -0.853 1.332 sum -19.228 2.699 11.602 22.619 Atomic orbital electron populations 1.23053 0.78040 1.04182 1.01848 1.87980 1.22374 1.26679 1.95801 1.22408 0.88128 0.86954 1.05446 1.21119 0.90570 0.83254 0.75347 1.90713 1.75705 1.28206 1.50704 1.48195 1.05953 1.06981 1.73251 1.22821 1.00009 0.80721 1.00683 1.22855 0.80563 0.99045 0.97769 0.92580 1.21730 1.02676 0.91559 1.03266 1.87898 1.21595 1.26654 1.93202 1.21905 0.93390 0.83607 0.93752 1.23284 0.99332 0.99458 0.96706 1.21568 0.84261 0.96269 0.93628 1.44797 1.02296 1.86874 1.01071 1.19498 0.82778 1.42720 0.91938 0.89747 1.25696 1.02178 1.02518 0.95680 1.70065 1.31519 1.58481 0.99984 0.84978 0.78951 0.77576 0.77200 1.21153 1.21928 1.19300 1.21229 0.90187 0.99115 0.87345 1.21887 0.80203 1.00442 0.99048 0.88934 0.91712 0.92205 0.86418 0.87350 0.84980 0.88098 0.90856 0.93107 0.87273 0.92454 0.90265 0.91174 0.99578 0.94312 0.94633 0.93401 0.89063 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -9.26 10.23 -129.94 -1.33 -10.59 16 3 C 0.05 0.84 4.79 71.24 0.34 1.18 16 4 C 0.51 13.94 7.79 87.66 0.68 14.62 16 5 O -0.57 -22.33 15.98 16.01 0.26 -22.07 16 6 N -0.61 -15.09 2.91 -818.54 -2.38 -17.47 16 7 C 0.08 1.25 5.82 86.35 0.50 1.76 16 8 C 0.06 1.24 3.17 30.69 0.10 1.34 16 9 H 0.06 1.38 6.13 -2.39 -0.01 1.37 16 10 C -0.13 -2.14 9.57 71.98 0.69 -1.45 16 11 O -0.37 -12.53 9.87 -148.98 -1.47 -14.00 16 12 C 0.11 4.18 0.83 -10.23 -0.01 4.17 16 13 C -0.15 -6.18 5.91 31.79 0.19 -5.99 16 14 C 0.17 8.89 5.88 86.88 0.51 9.40 16 15 N -0.62 -34.08 3.40 -692.54 -2.36 -36.44 16 16 C -0.24 -14.04 10.28 84.03 0.86 -13.18 16 17 H 0.08 4.67 7.83 -2.91 -0.02 4.65 16 18 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 19 N -0.95 -58.68 10.09 21.65 0.22 -58.46 16 20 Si 0.99 46.95 29.55 68.60 2.03 48.98 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 C 0.15 6.45 6.62 86.47 0.57 7.02 16 25 C 0.11 3.34 5.16 86.06 0.44 3.79 16 26 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 0.47 8.14 -2.38 -0.02 0.46 16 28 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.12 1.06 8.01 -2.38 -0.02 1.04 16 30 H 0.11 1.20 7.67 -2.39 -0.02 1.18 16 31 H 0.13 0.94 6.05 -2.39 -0.01 0.92 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 2.50 7.86 -2.39 -0.02 2.48 16 37 H 0.08 2.93 5.98 -2.38 -0.01 2.92 16 38 H 0.07 4.22 5.88 -2.38 -0.01 4.20 16 39 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 40 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.04 1.57 8.06 -2.39 -0.02 1.55 16 42 H 0.05 2.01 7.79 -2.38 -0.02 2.00 16 43 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.08 2.91 6.89 -2.39 -0.02 2.90 16 Total: -1.00 -82.19 345.45 2.54 -79.64 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.98 Total: 9.77 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 6.60 Total: 20.65 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -4.52 Total: -112.37 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -2.55 Total: -46.67 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -82.19 2.54 -79.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071110025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.646 kcal (2) G-P(sol) polarization free energy of solvation -82.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds