Wall clock time and date at job start Tue Mar 31 2020 05:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.87295 * 2 1 4 4 C 1.54421 * 109.88463 * 238.82967 * 2 1 3 5 5 H 1.09003 * 110.72522 * 336.73371 * 4 2 1 6 6 N 1.46502 * 110.75995 * 100.02901 * 4 2 1 7 7 C 1.34778 * 119.99963 * 199.94377 * 6 4 2 8 8 O 1.21283 * 120.00219 * 355.06097 * 7 6 4 9 9 C 1.50699 * 119.99949 * 175.06960 * 7 6 4 10 10 H 1.08996 * 109.53179 * 51.93685 * 9 7 6 11 11 O 1.43071 * 109.52719 * 172.07706 * 9 7 6 12 12 C 1.43076 * 113.59501 * 61.94017 * 11 9 7 13 13 C 1.53147 * 109.14783 * 57.95924 * 12 11 9 14 14 O 1.43080 * 109.14850 * 304.68549 * 13 12 11 15 15 C 1.43218 * 113.62637 * 57.95427 * 14 13 12 16 16 H 1.08996 * 109.50734 * 61.93780 * 15 14 13 17 17 C 1.52999 * 109.60908 * 182.17156 * 15 14 13 18 18 C 1.55154 * 102.89869 * 218.39082 * 4 2 1 19 19 C 1.54911 * 101.61393 * 35.49576 * 18 4 2 20 20 N 1.47020 * 109.88494 * 121.00799 * 2 1 3 21 21 C 1.36939 * 125.65173 * 298.39871 * 20 2 1 22 22 H 1.08001 * 119.99689 * 359.97438 * 21 20 2 23 23 C 1.38811 * 120.00445 * 179.97438 * 21 20 2 24 24 N 1.31614 * 119.99616 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00162 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47404 * 60.00019 * 25 23 21 27 27 H 1.48503 * 109.47231 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47199 * 299.99838 * 25 23 21 29 29 H 1.08998 * 109.47012 * 300.43795 * 1 2 3 30 30 H 1.08997 * 109.47200 * 60.44904 * 1 2 3 31 31 H 1.09002 * 109.46687 * 180.44435 * 1 2 3 32 32 H 0.96996 * 120.00382 * 19.95288 * 6 4 2 33 33 H 1.09000 * 109.52956 * 177.85673 * 12 11 9 34 34 H 1.09000 * 109.52994 * 298.05643 * 12 11 9 35 35 H 1.08997 * 109.52924 * 64.59041 * 13 12 11 36 36 H 1.09000 * 109.52671 * 184.72554 * 13 12 11 37 37 H 1.09006 * 109.46620 * 172.09925 * 17 15 14 38 38 H 1.08991 * 109.47770 * 292.10360 * 17 15 14 39 39 H 1.09005 * 109.46969 * 52.10892 * 17 15 14 40 40 H 1.08997 * 111.00365 * 277.40405 * 18 4 2 41 41 H 1.08994 * 111.00617 * 153.59137 * 18 4 2 42 42 H 1.09004 * 110.36450 * 81.81229 * 19 18 4 43 43 H 1.08999 * 110.36569 * 204.02363 * 19 18 4 44 44 H 0.97006 * 119.99625 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0552 -0.7516 -1.2425 5 1 1.3057 -1.4488 -1.6170 6 7 2.4562 0.1919 -2.2891 7 6 2.5572 -0.2228 -3.5675 8 8 2.4040 -1.3950 -3.8388 9 6 2.8608 0.7699 -4.6599 10 1 3.7448 1.3482 -4.3915 11 8 3.0994 0.0732 -5.8865 12 6 1.9728 -0.6797 -6.3460 13 6 0.7792 0.2624 -6.5274 14 8 0.5405 0.9593 -5.3008 15 6 1.6678 1.7131 -4.8402 16 1 1.9171 2.4799 -5.5736 17 6 1.3314 2.3739 -3.5019 18 6 3.2878 -1.5151 -0.6901 19 6 2.8146 -1.8782 0.7397 20 7 2.0301 -0.7122 1.1850 21 6 1.8039 -0.3527 2.4868 22 1 1.2127 0.5231 2.7102 23 6 2.3344 -1.1138 3.5194 24 7 3.0544 -2.1813 3.2471 25 14 2.0252 -0.6237 5.2951 26 1 0.5644 -0.6256 5.5621 27 1 2.6955 -1.5920 6.1998 28 1 2.5705 0.7365 5.5354 29 1 -0.3633 0.5206 0.8860 30 1 -0.3633 0.5068 -0.8940 31 1 -0.3633 -1.0277 0.0080 32 1 2.6491 1.1149 -2.0620 33 1 2.2134 -1.1505 -7.2991 34 1 1.7234 -1.4466 -5.6125 35 1 0.9986 0.9805 -7.3176 36 1 -0.1043 -0.3165 -6.7964 37 1 2.2301 2.8291 -3.0855 38 1 0.5733 3.1416 -3.6560 39 1 0.9516 1.6216 -2.8106 40 1 4.1655 -0.8697 -0.6590 41 1 3.4861 -2.4127 -1.2757 42 1 2.1888 -2.7703 0.7170 43 1 3.6718 -2.0334 1.3949 44 1 3.4254 -2.7130 3.9687 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088633299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:51 Heat of formation + Delta-G solvation = -85.060141 kcal Electronic energy + Delta-G solvation = -26104.198077 eV Core-core repulsion = 22444.160190 eV Total energy + Delta-G solvation = -3660.037886 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.05954 -38.87078 -37.41393 -36.20167 -34.48199 -33.14323 -31.77303 -30.37528 -29.17362 -28.72614 -27.25362 -24.72429 -23.99498 -23.47928 -22.15416 -20.53952 -20.17378 -19.41966 -17.39041 -17.15786 -16.77928 -16.70621 -16.33566 -15.55128 -15.48998 -14.76380 -14.46281 -14.30513 -13.93413 -13.69083 -13.45975 -12.96944 -12.79786 -12.64776 -12.42717 -12.22205 -12.12781 -12.00108 -11.75668 -11.57635 -11.18450 -11.14886 -10.86940 -10.81014 -10.70719 -10.53208 -10.32903 -10.12711 -9.86206 -9.74906 -9.58105 -8.89165 -8.67776 -8.58384 -6.88909 -5.66452 -3.09579 2.61478 3.17543 3.39096 3.43127 3.44783 3.45706 3.52233 4.22705 4.46185 4.59129 4.67437 4.78543 4.94121 4.99423 5.11469 5.18796 5.28122 5.30181 5.40895 5.53442 5.54532 5.61601 5.65028 5.80022 5.86674 5.94999 6.10719 6.24383 6.31851 6.34621 6.53118 6.59023 6.70179 6.73341 6.80504 6.86109 7.09380 7.50728 7.60886 7.65543 7.84421 8.31150 8.35279 9.19296 9.80298 10.44170 11.36736 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.032243 B = 0.003743 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.197828 B = 7479.485682 C = 7894.349413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.035 0.965 4 C 0.135 3.865 5 H 0.090 0.910 6 N -0.711 5.711 7 C 0.500 3.500 8 O -0.529 6.529 9 C 0.039 3.961 10 H 0.133 0.867 11 O -0.353 6.353 12 C 0.001 3.999 13 C 0.027 3.973 14 O -0.371 6.371 15 C 0.067 3.933 16 H 0.078 0.922 17 C -0.167 4.167 18 C -0.152 4.152 19 C 0.153 3.847 20 N -0.594 5.594 21 C -0.222 4.222 22 H 0.077 0.923 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.914 3.086 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.398 0.602 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.014 0.986 43 H 0.109 0.891 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 8.536 -17.871 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.053 0.947 4 C 0.031 3.969 5 H 0.108 0.892 6 N -0.365 5.365 7 C 0.285 3.715 8 O -0.406 6.406 9 C -0.023 4.023 10 H 0.151 0.849 11 O -0.271 6.271 12 C -0.076 4.076 13 C -0.050 4.050 14 O -0.290 6.290 15 C 0.008 3.992 16 H 0.096 0.904 17 C -0.224 4.224 18 C -0.192 4.192 19 C 0.028 3.972 20 N -0.320 5.320 21 C -0.350 4.350 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.745 3.255 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.235 0.765 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.032 0.968 43 H 0.127 0.873 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.865 7.598 -17.841 19.481 hybrid contribution -0.114 0.620 0.918 1.114 sum -1.979 8.218 -16.923 18.917 Atomic orbital electron populations 1.22252 0.97853 1.01444 0.99983 1.20996 0.92594 0.94697 0.86898 0.94727 1.22175 0.97604 0.90844 0.86311 0.89174 1.46418 1.68799 1.14176 1.07072 1.21004 0.77024 0.89583 0.83882 1.90590 1.49786 1.18056 1.82146 1.22896 1.00939 0.92986 0.85431 0.84945 1.88138 1.37161 1.65280 1.36489 1.23696 0.86322 0.95363 1.02176 1.23261 0.99786 0.95397 0.86574 1.88170 1.35541 1.65036 1.40230 1.22644 0.85973 0.92347 0.98217 0.90396 1.22150 1.03091 1.01903 0.95263 1.23386 0.96688 0.99424 0.99694 1.21948 0.97353 0.88359 0.89571 1.44473 1.59218 1.28248 1.00022 1.18974 1.27301 1.08237 0.80528 0.90504 1.24783 1.00315 0.97349 0.98039 1.69790 1.38981 1.17825 1.30277 0.86162 0.77651 0.77420 0.84292 1.21223 1.21593 1.21184 0.92669 0.94254 0.92972 0.76525 0.88069 0.87953 0.92563 0.87781 0.90317 0.90769 0.89610 0.92060 0.91959 0.96815 0.87349 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.14 37.16 0.34 -2.50 16 2 C 0.16 3.06 3.48 -66.90 -0.23 2.83 16 3 H 0.04 0.65 7.70 -51.93 -0.40 0.25 16 4 C 0.14 2.43 2.72 -66.04 -0.18 2.25 16 5 H 0.09 1.76 7.49 -51.93 -0.39 1.38 16 6 N -0.71 -10.17 3.58 -51.98 -0.19 -10.36 16 7 C 0.50 7.48 6.43 -10.99 -0.07 7.41 16 8 O -0.53 -9.81 13.54 -14.18 -0.19 -10.00 16 9 C 0.04 0.46 3.37 -27.81 -0.09 0.37 16 10 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 11 O -0.35 -4.64 10.53 -62.47 -0.66 -5.29 16 12 C 0.00 0.01 6.60 37.23 0.25 0.25 16 13 C 0.03 0.27 7.05 37.23 0.26 0.53 16 14 O -0.37 -4.58 10.24 -48.80 -0.50 -5.07 16 15 C 0.07 0.68 3.16 -26.66 -0.08 0.59 16 16 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 17 C -0.17 -1.48 8.02 37.16 0.30 -1.18 16 18 C -0.15 -3.04 6.76 -24.58 -0.17 -3.21 16 19 C 0.15 3.71 5.89 -2.53 -0.01 3.70 16 20 N -0.59 -14.61 3.13 -162.51 -0.51 -15.12 16 21 C -0.22 -5.97 9.87 -15.06 -0.15 -6.12 16 22 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 23 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 24 N -0.92 -26.49 10.09 55.49 0.56 -25.93 16 25 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 28 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 29 H 0.05 1.04 8.02 -51.93 -0.42 0.62 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.40 4.64 6.11 -40.82 -0.25 4.39 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 1.50 5.34 -51.93 -0.28 1.22 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.50 7.60 -51.93 -0.39 0.11 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.95 6.03 -51.93 -0.31 0.63 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.11 2.95 5.88 -51.93 -0.31 2.65 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -32.20 339.83 -8.27 -40.47 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.94 Total: 4.94 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 0.06 Total: 4.57 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.13 Total: -51.41 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -1.35 Total: -20.37 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.20 -8.27 -40.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088633299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.590 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds