Wall clock time and date at job start Tue Mar 31 2020 05:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.87295 * 2 1 4 4 C 1.54421 * 109.88463 * 238.82967 * 2 1 3 5 5 H 1.09003 * 110.72522 * 336.73371 * 4 2 1 6 6 N 1.46502 * 110.75995 * 100.02901 * 4 2 1 7 7 C 1.34778 * 119.99963 * 199.94377 * 6 4 2 8 8 O 1.21283 * 120.00219 * 355.06097 * 7 6 4 9 9 C 1.50699 * 119.99949 * 175.06960 * 7 6 4 10 10 H 1.08996 * 109.53179 * 51.93685 * 9 7 6 11 11 O 1.43071 * 109.52719 * 172.07706 * 9 7 6 12 12 C 1.43076 * 113.59501 * 61.94017 * 11 9 7 13 13 C 1.53147 * 109.14783 * 57.95924 * 12 11 9 14 14 O 1.43080 * 109.14850 * 304.68549 * 13 12 11 15 15 C 1.43218 * 113.62637 * 57.95427 * 14 13 12 16 16 H 1.08996 * 109.50734 * 61.93780 * 15 14 13 17 17 C 1.52999 * 109.60908 * 182.17156 * 15 14 13 18 18 C 1.55154 * 102.89869 * 218.39082 * 4 2 1 19 19 C 1.54911 * 101.61393 * 35.49576 * 18 4 2 20 20 N 1.47020 * 109.88494 * 121.00799 * 2 1 3 21 21 C 1.36939 * 125.65173 * 298.39871 * 20 2 1 22 22 H 1.08001 * 119.99689 * 359.97438 * 21 20 2 23 23 C 1.38811 * 120.00445 * 179.97438 * 21 20 2 24 24 N 1.31614 * 119.99616 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00162 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47404 * 60.00019 * 25 23 21 27 27 H 1.48503 * 109.47231 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47199 * 299.99838 * 25 23 21 29 29 H 1.08998 * 109.47012 * 300.43795 * 1 2 3 30 30 H 1.08997 * 109.47200 * 60.44904 * 1 2 3 31 31 H 1.09002 * 109.46687 * 180.44435 * 1 2 3 32 32 H 0.96996 * 120.00382 * 19.95288 * 6 4 2 33 33 H 1.09000 * 109.52956 * 177.85673 * 12 11 9 34 34 H 1.09000 * 109.52994 * 298.05643 * 12 11 9 35 35 H 1.08997 * 109.52924 * 64.59041 * 13 12 11 36 36 H 1.09000 * 109.52671 * 184.72554 * 13 12 11 37 37 H 1.09006 * 109.46620 * 172.09925 * 17 15 14 38 38 H 1.08991 * 109.47770 * 292.10360 * 17 15 14 39 39 H 1.09005 * 109.46969 * 52.10892 * 17 15 14 40 40 H 1.08997 * 111.00365 * 277.40405 * 18 4 2 41 41 H 1.08994 * 111.00617 * 153.59137 * 18 4 2 42 42 H 1.09004 * 110.36450 * 81.81229 * 19 18 4 43 43 H 1.08999 * 110.36569 * 204.02363 * 19 18 4 44 44 H 0.97006 * 119.99625 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0552 -0.7516 -1.2425 5 1 1.3057 -1.4488 -1.6170 6 7 2.4562 0.1919 -2.2891 7 6 2.5572 -0.2228 -3.5675 8 8 2.4040 -1.3950 -3.8388 9 6 2.8608 0.7699 -4.6599 10 1 3.7448 1.3482 -4.3915 11 8 3.0994 0.0732 -5.8865 12 6 1.9728 -0.6797 -6.3460 13 6 0.7792 0.2624 -6.5274 14 8 0.5405 0.9593 -5.3008 15 6 1.6678 1.7131 -4.8402 16 1 1.9171 2.4799 -5.5736 17 6 1.3314 2.3739 -3.5019 18 6 3.2878 -1.5151 -0.6901 19 6 2.8146 -1.8782 0.7397 20 7 2.0301 -0.7122 1.1850 21 6 1.8039 -0.3527 2.4868 22 1 1.2127 0.5231 2.7102 23 6 2.3344 -1.1138 3.5194 24 7 3.0544 -2.1813 3.2471 25 14 2.0252 -0.6237 5.2951 26 1 0.5644 -0.6256 5.5621 27 1 2.6955 -1.5920 6.1998 28 1 2.5705 0.7365 5.5354 29 1 -0.3633 0.5206 0.8860 30 1 -0.3633 0.5068 -0.8940 31 1 -0.3633 -1.0277 0.0080 32 1 2.6491 1.1149 -2.0620 33 1 2.2134 -1.1505 -7.2991 34 1 1.7234 -1.4466 -5.6125 35 1 0.9986 0.9805 -7.3176 36 1 -0.1043 -0.3165 -6.7964 37 1 2.2301 2.8291 -3.0855 38 1 0.5733 3.1416 -3.6560 39 1 0.9516 1.6216 -2.8106 40 1 4.1655 -0.8697 -0.6590 41 1 3.4861 -2.4127 -1.2757 42 1 2.1888 -2.7703 0.7170 43 1 3.6718 -2.0334 1.3949 44 1 3.4254 -2.7130 3.9687 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088633299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:51 Heat of formation + Delta-G solvation = -106.748831 kcal Electronic energy + Delta-G solvation = -26105.138569 eV Core-core repulsion = 22444.160190 eV Total energy + Delta-G solvation = -3660.978378 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.07227 -40.16947 -38.84405 -37.15354 -35.80047 -34.51224 -33.27056 -32.04839 -30.49613 -29.95574 -28.28246 -26.35682 -25.78663 -24.26813 -23.22689 -22.10355 -21.62659 -20.89744 -18.75424 -18.27950 -18.04687 -17.74762 -17.47119 -16.90762 -16.39901 -16.35845 -15.81239 -15.68504 -15.39248 -15.14297 -14.57565 -14.35971 -14.03359 -13.80734 -13.75285 -13.36040 -13.25434 -13.14773 -12.97002 -12.92901 -12.71295 -12.63970 -12.57716 -12.27779 -12.22537 -12.03532 -11.80946 -11.56546 -11.51592 -11.43749 -10.79397 -10.71191 -10.01684 -9.85738 -8.89394 -7.73654 -5.18880 1.48161 1.49750 1.52262 1.58374 2.01587 2.52929 2.62730 2.70032 3.36903 3.41470 3.50738 3.71744 3.84624 3.91300 3.96189 3.98231 4.18390 4.19108 4.27912 4.37965 4.43521 4.49179 4.62035 4.65695 4.69532 4.79274 4.85656 4.89372 4.94309 4.99545 5.05627 5.14734 5.29011 5.38073 5.50467 5.59546 5.61557 5.80179 5.80589 6.05719 6.30771 6.50876 7.11725 7.18756 7.79855 8.43600 9.28203 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.032243 B = 0.003743 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.197828 B = 7479.485682 C = 7894.349413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.153 3.847 3 H 0.057 0.943 4 C 0.154 3.846 5 H 0.073 0.927 6 N -0.697 5.697 7 C 0.496 3.504 8 O -0.570 6.570 9 C 0.041 3.959 10 H 0.166 0.834 11 O -0.367 6.367 12 C -0.002 4.002 13 C 0.027 3.973 14 O -0.396 6.396 15 C 0.067 3.933 16 H 0.104 0.896 17 C -0.168 4.168 18 C -0.138 4.138 19 C 0.158 3.842 20 N -0.613 5.613 21 C -0.228 4.228 22 H 0.087 0.913 23 C -0.068 4.068 24 N -0.952 5.952 25 Si 0.979 3.021 26 H -0.280 1.280 27 H -0.299 1.299 28 H -0.274 1.274 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.415 0.585 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.060 0.940 42 H -0.018 1.018 43 H 0.077 0.923 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.062 11.521 -19.254 22.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.047 3.953 3 H 0.075 0.925 4 C 0.048 3.952 5 H 0.091 0.909 6 N -0.352 5.352 7 C 0.283 3.717 8 O -0.449 6.449 9 C -0.020 4.020 10 H 0.183 0.817 11 O -0.284 6.284 12 C -0.078 4.078 13 C -0.049 4.049 14 O -0.316 6.316 15 C 0.009 3.991 16 H 0.122 0.878 17 C -0.225 4.225 18 C -0.178 4.178 19 C 0.032 3.968 20 N -0.338 5.338 21 C -0.357 4.357 22 H 0.105 0.895 23 C -0.261 4.261 24 N -0.602 5.602 25 Si 0.807 3.193 26 H -0.206 1.206 27 H -0.225 1.225 28 H -0.200 1.200 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.255 0.745 33 H 0.140 0.860 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.000 1.000 43 H 0.095 0.905 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.141 10.646 -19.255 22.106 hybrid contribution -0.054 -0.319 1.271 1.312 sum -2.195 10.327 -17.984 20.854 Atomic orbital electron populations 1.22130 0.96592 1.00559 1.01290 1.21196 0.93428 0.95155 0.85548 0.92542 1.21693 0.95899 0.90919 0.86693 0.90932 1.46201 1.68556 1.14263 1.06204 1.21784 0.75776 0.89755 0.84387 1.90598 1.51410 1.20159 1.82746 1.23169 1.03192 0.92157 0.83501 0.81706 1.88114 1.37999 1.65471 1.36825 1.23723 0.86933 0.95085 1.02060 1.23361 0.99423 0.95573 0.86537 1.88142 1.36780 1.65497 1.41175 1.22856 0.84623 0.92094 0.99566 0.87784 1.22206 1.04716 1.01445 0.94089 1.23177 0.97811 0.99880 0.96894 1.21652 0.95698 0.87799 0.91620 1.44704 1.59670 1.28513 1.00897 1.19379 1.26438 1.08164 0.81694 0.89491 1.25611 1.00813 0.97688 1.01955 1.70046 1.40356 1.19019 1.30752 0.85145 0.77483 0.77160 0.79493 1.20639 1.22505 1.19962 0.93209 0.91018 0.94946 0.74547 0.86043 0.91320 0.90357 0.86758 0.87504 0.89777 0.91926 0.91114 0.92160 1.00024 0.90465 0.94509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 9.14 71.98 0.66 -4.50 16 2 C 0.15 5.83 3.48 45.38 0.16 5.99 16 3 H 0.06 1.95 7.70 -2.38 -0.02 1.93 16 4 C 0.15 5.44 2.72 46.21 0.13 5.57 16 5 H 0.07 2.87 7.49 -2.39 -0.02 2.85 16 6 N -0.70 -18.55 3.58 -436.75 -1.56 -20.11 16 7 C 0.50 14.08 6.43 87.66 0.56 14.65 16 8 O -0.57 -21.18 13.54 15.83 0.21 -20.97 16 9 C 0.04 0.84 3.37 29.90 0.10 0.94 16 10 H 0.17 2.23 8.14 -2.39 -0.02 2.21 16 11 O -0.37 -8.83 10.53 -122.94 -1.29 -10.13 16 12 C 0.00 -0.04 6.60 72.03 0.48 0.43 16 13 C 0.03 0.50 7.05 72.03 0.51 1.00 16 14 O -0.40 -8.83 10.24 -136.00 -1.39 -10.22 16 15 C 0.07 1.12 3.16 30.64 0.10 1.22 16 16 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 17 C -0.17 -2.32 8.02 71.98 0.58 -1.74 16 18 C -0.14 -5.56 6.76 31.99 0.22 -5.34 16 19 C 0.16 7.98 5.89 86.86 0.51 8.49 16 20 N -0.61 -30.33 3.13 -668.07 -2.09 -32.42 16 21 C -0.23 -12.25 9.87 84.03 0.83 -11.42 16 22 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 23 C -0.07 -3.81 5.49 84.86 0.47 -3.35 16 24 N -0.95 -56.65 10.09 21.65 0.22 -56.43 16 25 Si 0.98 44.92 29.55 68.60 2.03 46.95 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 29 H 0.05 1.79 8.02 -2.39 -0.02 1.77 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.41 8.28 6.11 -92.71 -0.57 7.71 16 33 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.07 2.03 5.34 -2.39 -0.01 2.01 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.11 0.84 7.60 -2.38 -0.02 0.82 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.18 6.03 -2.38 -0.01 1.16 16 40 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 42 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 43 H 0.08 4.41 5.88 -2.39 -0.01 4.40 16 44 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 Total: -1.00 -72.34 339.83 1.84 -70.50 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.43 Total: 20.89 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 5.29 Total: 11.94 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -3.44 Total: -108.97 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -2.47 Total: -41.31 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -72.34 1.84 -70.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088633299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.245 kcal (2) G-P(sol) polarization free energy of solvation -72.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds