Wall clock time and date at job start Tue Mar 31 2020 03:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47596 * 2 1 4 4 C 1.52998 * 109.47190 * 239.99311 * 2 1 3 5 5 C 1.50706 * 109.47015 * 119.99838 * 2 1 3 6 6 O 1.20783 * 119.99804 * 359.97438 * 5 2 1 7 7 C 1.49081 * 120.00196 * 179.97438 * 5 2 1 8 8 O 1.21369 * 119.99987 * 0.02562 * 7 5 2 9 9 N 1.34779 * 120.00318 * 179.97438 * 7 5 2 10 10 C 1.46496 * 120.00450 * 180.02562 * 9 7 5 11 11 H 1.09002 * 109.45744 * 35.02535 * 10 9 7 12 12 C 1.53040 * 109.46193 * 275.07167 * 10 9 7 13 13 C 1.53195 * 109.31295 * 178.61123 * 12 10 9 14 14 N 1.46920 * 108.77506 * 54.63726 * 13 12 10 15 15 C 1.36938 * 120.63243 * 126.41225 * 14 13 12 16 16 H 1.07996 * 119.99905 * 331.82084 * 15 14 13 17 17 C 1.38812 * 119.99673 * 151.82672 * 15 14 13 18 18 N 1.31613 * 120.00454 * 343.06169 * 17 15 14 19 19 Si 1.86807 * 119.99638 * 163.06666 * 17 15 14 20 20 H 1.48499 * 109.46996 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47207 * 119.99399 * 19 17 15 22 22 H 1.48500 * 109.46838 * 239.99581 * 19 17 15 23 23 C 1.46932 * 118.73724 * 306.39112 * 14 13 12 24 24 C 1.53041 * 109.46431 * 155.00003 * 10 9 7 25 25 H 1.09000 * 109.49543 * 301.34425 * 24 10 9 26 26 O 1.42903 * 109.51901 * 61.41983 * 24 10 9 27 27 H 1.09001 * 109.47068 * 300.00469 * 1 2 3 28 28 H 1.09002 * 109.46963 * 59.99772 * 1 2 3 29 29 H 1.08998 * 109.47498 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47354 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46551 * 299.99390 * 3 2 1 32 32 H 1.09001 * 109.47295 * 59.99670 * 3 2 1 33 33 H 1.08998 * 109.47137 * 300.00511 * 4 2 1 34 34 H 1.09005 * 109.46955 * 60.00073 * 4 2 1 35 35 H 1.08997 * 109.47513 * 180.02562 * 4 2 1 36 36 H 0.97002 * 119.99841 * 0.02562 * 9 7 5 37 37 H 1.09006 * 109.49702 * 58.65855 * 12 10 9 38 38 H 1.09001 * 109.49840 * 298.56518 * 12 10 9 39 39 H 1.09000 * 109.58560 * 294.84240 * 13 12 10 40 40 H 1.08998 * 109.58148 * 174.42406 * 13 12 10 41 41 H 0.97003 * 120.00156 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.58842 * 173.39969 * 23 14 13 43 43 H 1.09005 * 109.58378 * 293.81713 * 23 14 13 44 44 H 0.96701 * 113.99645 * 179.85565 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0323 -0.7104 1.2305 6 8 1.2474 -1.1690 2.0258 7 6 3.4980 -0.8471 1.4662 8 8 4.2867 -0.3859 0.6673 9 7 3.9473 -1.4820 2.5670 10 6 5.3875 -1.6159 2.7989 11 1 5.8984 -0.7247 2.4343 12 6 5.9120 -2.8449 2.0529 13 6 7.4241 -2.9619 2.2694 14 7 7.6958 -2.9711 3.7132 15 6 8.4357 -3.9756 4.2777 16 1 8.4453 -4.9574 3.8278 17 6 9.1732 -3.7320 5.4282 18 7 9.4379 -2.4948 5.7906 19 14 9.7901 -5.1604 6.4620 20 1 9.3610 -6.4406 5.8437 21 1 11.2727 -5.1166 6.5322 22 1 9.2264 -5.0595 7.8321 23 6 7.1588 -1.8815 4.5400 24 6 5.6499 -1.7766 4.2981 25 1 5.2552 -0.9117 4.8312 26 8 5.0074 -2.9623 4.7708 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6768 1.9562 -0.8901 32 1 1.6768 1.9563 0.8899 33 1 1.6766 -1.7490 -1.2491 34 1 1.6766 -0.2076 -2.1392 35 1 3.1300 -0.7218 -1.2490 36 1 3.3169 -1.8503 3.2057 37 1 5.7040 -2.7404 0.9880 38 1 5.4196 -3.7395 2.4342 39 1 7.9261 -2.1113 1.8084 40 1 7.7864 -3.8882 1.8235 41 1 9.9536 -2.3246 6.5944 42 1 7.3463 -2.0949 5.5924 43 1 7.6394 -0.9428 4.2642 44 1 5.1339 -3.1283 5.7151 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099745973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:09 Heat of formation + Delta-G solvation = -125.804392 kcal Electronic energy + Delta-G solvation = -25526.798375 eV Core-core repulsion = 21864.993686 eV Total energy + Delta-G solvation = -3661.804689 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.03849 -40.39844 -39.19998 -37.06076 -36.49666 -35.66000 -33.89971 -31.31807 -30.76462 -28.44673 -28.23347 -27.53050 -26.28928 -24.16467 -23.63729 -22.09150 -21.24153 -20.08039 -19.11070 -18.50601 -17.73959 -17.22294 -16.99427 -16.77396 -16.46619 -15.99892 -15.61691 -15.47916 -15.38912 -15.08883 -14.69933 -14.57447 -14.09869 -13.79859 -13.68073 -13.52615 -13.18654 -13.06930 -13.03539 -12.83883 -12.68690 -12.59062 -12.54384 -12.38280 -12.26273 -12.01017 -11.93098 -11.84270 -11.74244 -11.47506 -10.81550 -10.60261 -10.36508 -10.16918 -8.68472 -7.88723 -5.32835 -0.13187 1.46320 1.50014 1.59923 1.63920 1.89010 2.51121 3.01844 3.25076 3.36450 3.50580 3.64817 3.81153 3.85926 3.88841 3.96155 4.28323 4.30846 4.34924 4.57566 4.65676 4.68585 4.74056 4.81178 4.85867 4.89404 4.93467 4.94237 5.01669 5.05062 5.15045 5.20302 5.23674 5.34188 5.40874 5.41787 5.53980 5.64879 5.76227 6.33942 6.37143 6.85047 6.90443 7.13924 7.81727 8.34360 9.17830 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.036725 B = 0.003384 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.248330 B = 8272.058380 C = 8450.603875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.365 3.635 6 O -0.433 6.433 7 C 0.468 3.532 8 O -0.525 6.525 9 N -0.689 5.689 10 C 0.165 3.835 11 H 0.087 0.913 12 C -0.121 4.121 13 C 0.146 3.854 14 N -0.599 5.599 15 C -0.255 4.255 16 H 0.061 0.939 17 C -0.045 4.045 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.272 1.272 21 H -0.295 1.295 22 H -0.287 1.287 23 C 0.152 3.848 24 C 0.087 3.913 25 H 0.068 0.932 26 O -0.563 6.563 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.415 0.585 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.017 0.983 40 H 0.057 0.943 41 H 0.251 0.749 42 H 0.072 0.928 43 H 0.009 0.991 44 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.439 6.255 -9.764 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.095 4.095 3 C -0.198 4.198 4 C -0.199 4.199 5 C 0.236 3.764 6 O -0.303 6.303 7 C 0.251 3.749 8 O -0.402 6.402 9 N -0.341 5.341 10 C 0.061 3.939 11 H 0.105 0.895 12 C -0.161 4.161 13 C 0.020 3.980 14 N -0.322 5.322 15 C -0.385 4.385 16 H 0.079 0.921 17 C -0.241 4.241 18 N -0.580 5.580 19 Si 0.794 3.206 20 H -0.196 1.196 21 H -0.223 1.223 22 H -0.213 1.213 23 C 0.025 3.975 24 C 0.026 3.974 25 H 0.086 0.914 26 O -0.370 6.370 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.251 0.749 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.035 0.965 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.091 0.909 43 H 0.027 0.973 44 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -17.394 6.320 -10.391 21.225 hybrid contribution 0.877 -0.787 1.741 2.102 sum -16.517 5.533 -8.650 19.449 Atomic orbital electron populations 1.21784 0.90809 1.02836 1.03504 1.21057 0.98284 0.97547 0.92600 1.21903 1.02192 0.91998 1.03722 1.21906 1.02193 1.00062 0.95704 1.25263 0.87471 0.76097 0.87588 1.90405 1.58545 1.36810 1.44575 1.21343 0.91637 0.79593 0.82317 1.90707 1.57536 1.47399 1.44562 1.46137 1.08698 1.55342 1.23938 1.20909 0.79903 0.98907 0.94223 0.89489 1.22101 0.97239 0.97719 0.99042 1.20970 0.93014 0.98983 0.85073 1.44107 1.59368 1.26668 1.02030 1.19447 1.20372 0.90176 1.08490 0.92098 1.25686 0.98262 0.98210 1.01909 1.70153 1.42530 1.19394 1.25950 0.85235 0.77041 0.79626 0.78651 1.19621 1.22256 1.21318 1.21307 0.89217 0.89739 0.97269 1.22562 0.94206 0.87636 0.92980 0.91426 1.86329 1.75174 1.44794 1.30740 0.92354 0.89061 0.92471 0.91914 0.88856 0.92315 0.92479 0.88824 0.91923 0.74890 0.91688 0.92031 0.96459 0.92468 0.93993 0.90938 0.97314 0.76410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 7.76 71.98 0.56 -1.35 16 2 C -0.09 -1.68 0.76 -52.93 -0.04 -1.72 16 3 C -0.14 -2.30 8.29 71.98 0.60 -1.70 16 4 C -0.14 -2.36 8.29 71.98 0.60 -1.77 16 5 C 0.37 8.76 6.03 28.60 0.17 8.93 16 6 O -0.43 -11.47 16.09 -1.52 -0.02 -11.50 16 7 C 0.47 13.24 7.51 87.16 0.65 13.90 16 8 O -0.52 -16.58 13.05 -3.31 -0.04 -16.62 16 9 N -0.69 -20.28 5.04 -444.13 -2.24 -22.52 16 10 C 0.16 5.61 2.20 45.02 0.10 5.71 16 11 H 0.09 3.14 7.58 -2.39 -0.02 3.12 16 12 C -0.12 -4.41 5.51 30.67 0.17 -4.24 16 13 C 0.15 6.20 6.52 86.36 0.56 6.76 16 14 N -0.60 -29.36 2.93 -699.11 -2.05 -31.41 16 15 C -0.25 -13.73 9.58 84.03 0.81 -12.92 16 16 H 0.06 3.28 7.88 -2.91 -0.02 3.26 16 17 C -0.05 -2.45 4.92 84.86 0.42 -2.03 16 18 N -0.93 -53.05 11.20 21.65 0.24 -52.81 16 19 Si 0.97 43.85 29.59 68.60 2.03 45.88 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 23 C 0.15 6.86 4.94 86.36 0.43 7.29 16 24 C 0.09 3.09 3.38 30.67 0.10 3.19 16 25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 26 O -0.56 -19.42 12.09 -148.98 -1.80 -21.22 16 27 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 30 H 0.06 1.29 6.43 -2.39 -0.02 1.28 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.06 1.32 6.43 -2.39 -0.02 1.30 16 36 H 0.41 11.65 7.72 -92.71 -0.72 10.94 16 37 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 38 H 0.06 2.38 7.61 -2.39 -0.02 2.36 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 41 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 42 H 0.07 3.63 6.06 -2.39 -0.01 3.62 16 43 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 44 H 0.39 11.53 9.08 -74.06 -0.67 10.86 16 Total: -1.00 -63.08 351.52 0.86 -62.22 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -0.38 Total: 27.93 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: 5.12 Total: 20.04 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -4.05 Total: -106.74 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -1.87 Total: -49.34 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -63.08 0.86 -62.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099745973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.588 kcal (2) G-P(sol) polarization free energy of solvation -63.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds