Wall clock time and date at job start Tue Mar 31 2020 03:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00103 * 2 1 4 4 C 1.53002 * 109.46735 * 125.00383 * 3 2 1 5 5 O 1.42909 * 109.46746 * 180.02562 * 4 3 2 6 6 C 1.42899 * 113.99875 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47219 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99766 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00138 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99830 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.44992 * 324.96364 * 10 9 7 12 12 C 1.53040 * 109.46158 * 84.93179 * 10 9 7 13 13 C 1.53187 * 109.31046 * 181.38042 * 12 10 9 14 14 N 1.46918 * 108.78207 * 305.36456 * 13 12 10 15 15 C 1.36939 * 120.63443 * 233.63262 * 14 13 12 16 16 H 1.07999 * 119.99928 * 27.66030 * 15 14 13 17 17 C 1.38817 * 120.00012 * 207.66443 * 15 14 13 18 18 N 1.31620 * 119.99945 * 17.36039 * 17 15 14 19 19 Si 1.86799 * 119.99960 * 197.36132 * 17 15 14 20 20 H 1.48504 * 109.47010 * 89.99893 * 19 17 15 21 21 H 1.48497 * 109.47104 * 210.00287 * 19 17 15 22 22 H 1.48502 * 109.46716 * 330.00217 * 19 17 15 23 23 C 1.46927 * 118.73758 * 53.60724 * 14 13 12 24 24 C 1.53041 * 109.45748 * 205.00112 * 10 9 7 25 25 H 1.09003 * 109.52541 * 298.57999 * 24 10 9 26 26 O 1.42903 * 109.49970 * 58.66329 * 24 10 9 27 27 H 1.07997 * 119.99921 * 179.97438 * 1 2 3 28 28 H 1.07993 * 119.99898 * 359.97438 * 1 2 3 29 29 H 1.08006 * 119.99657 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46903 * 5.00376 * 3 2 1 31 31 H 1.09001 * 109.47254 * 245.00169 * 3 2 1 32 32 H 1.08998 * 109.47430 * 60.00316 * 4 3 2 33 33 H 1.09001 * 109.47074 * 299.99896 * 4 3 2 34 34 H 1.09008 * 109.46675 * 60.00183 * 6 5 4 35 35 H 1.08998 * 109.47296 * 300.00764 * 6 5 4 36 36 H 0.96994 * 119.99760 * 0.02562 * 9 7 6 37 37 H 1.09006 * 109.49496 * 61.43127 * 12 10 9 38 38 H 1.08992 * 109.52364 * 301.35149 * 12 10 9 39 39 H 1.09004 * 109.58368 * 185.57755 * 13 12 10 40 40 H 1.09002 * 109.58711 * 65.15779 * 13 12 10 41 41 H 0.97000 * 119.99882 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.59237 * 186.60355 * 23 14 13 43 43 H 1.09008 * 109.70024 * 66.25246 * 23 14 13 44 44 H 0.96698 * 114.00001 * 179.84220 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 8 3.7493 2.5707 1.1820 6 6 4.6880 2.6999 2.2516 7 6 5.3800 4.0349 2.1542 8 8 5.0969 4.8007 1.2573 9 7 6.3136 4.3781 3.0638 10 6 6.9860 5.6762 2.9693 11 1 7.1211 5.9395 1.9202 12 6 6.1322 6.7439 3.6571 13 6 6.8216 8.1056 3.5263 14 7 8.1892 7.9958 4.0519 15 6 8.6373 8.8584 5.0165 16 1 7.9382 9.3078 5.7061 17 6 9.9903 9.1553 5.1077 18 7 10.7899 8.9002 4.0938 19 14 10.6762 9.9168 6.6695 20 1 11.1036 8.8402 7.5987 21 1 11.8425 10.7719 6.3324 22 1 9.6274 10.7437 7.3188 23 6 9.0667 6.9425 3.5235 24 6 8.3521 5.5938 3.6542 25 1 8.2169 5.3545 4.7091 26 8 9.1375 4.5755 3.0310 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5399 0.9353 0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3586 2.1315 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 3.7401 0.5064 1.0920 33 1 2.4774 1.2354 2.1130 34 1 5.4275 1.9019 2.1843 35 1 4.1642 2.6303 3.2050 36 1 6.5403 3.7655 3.7808 37 1 6.0174 6.4940 4.7119 38 1 5.1510 6.7860 3.1843 39 1 6.2692 8.8513 4.0981 40 1 6.8559 8.3986 2.4770 41 1 11.7352 9.1080 4.1574 42 1 9.9956 6.9207 4.0933 43 1 9.2863 7.1394 2.4741 44 1 10.0192 4.4693 3.4138 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100137072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:56 Heat of formation + Delta-G solvation = -118.268638 kcal Electronic energy + Delta-G solvation = -24228.636088 eV Core-core repulsion = 20567.158173 eV Total energy + Delta-G solvation = -3661.477915 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.13996 -39.64036 -38.61981 -36.89296 -35.92778 -35.75059 -33.99515 -31.65252 -30.71204 -30.42540 -28.47142 -26.66285 -24.17006 -23.90952 -23.45122 -21.61009 -21.14479 -20.64386 -19.00558 -18.16662 -18.06916 -17.87555 -17.42053 -16.99677 -16.55008 -16.21812 -15.79945 -15.58169 -15.48401 -15.14342 -15.03211 -14.44186 -14.26848 -14.12000 -13.86250 -13.58159 -13.37363 -13.32510 -13.05314 -12.66534 -12.55402 -12.50208 -12.14595 -12.09111 -12.00760 -11.97012 -11.88342 -11.40150 -11.00612 -10.78029 -10.67700 -10.60608 -10.25796 -10.06592 -8.77701 -7.91071 -5.38460 1.34265 1.49086 1.50203 1.59574 1.60206 1.84462 2.49546 2.98839 3.11482 3.26949 3.62376 3.74466 3.92833 4.01421 4.05113 4.16497 4.20024 4.28180 4.30488 4.33863 4.41293 4.45331 4.47060 4.50494 4.70328 4.88108 4.91304 4.93503 5.03415 5.04025 5.11075 5.15130 5.31930 5.45881 5.55986 5.63683 5.73597 5.86525 6.10380 6.32700 6.59862 6.82993 7.09464 7.27182 7.76724 8.29959 9.15685 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.043311 B = 0.002477 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.324551 B =11299.073978 C =11559.720561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C -0.096 4.096 4 C 0.062 3.938 5 O -0.401 6.401 6 C 0.053 3.947 7 C 0.505 3.495 8 O -0.579 6.579 9 N -0.700 5.700 10 C 0.170 3.830 11 H 0.051 0.949 12 C -0.123 4.123 13 C 0.141 3.859 14 N -0.604 5.604 15 C -0.265 4.265 16 H 0.074 0.926 17 C -0.049 4.049 18 N -0.936 5.936 19 Si 0.972 3.028 20 H -0.280 1.280 21 H -0.298 1.298 22 H -0.269 1.269 23 C 0.155 3.845 24 C 0.094 3.906 25 H 0.071 0.929 26 O -0.573 6.573 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.125 0.875 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.416 0.584 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.006 0.994 41 H 0.252 0.748 42 H 0.072 0.928 43 H -0.007 1.007 44 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.072 -20.131 0.097 24.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.177 4.177 3 C -0.133 4.133 4 C -0.013 4.013 5 O -0.321 6.321 6 C -0.027 4.027 7 C 0.292 3.708 8 O -0.458 6.458 9 N -0.353 5.353 10 C 0.065 3.935 11 H 0.069 0.931 12 C -0.163 4.163 13 C 0.015 3.985 14 N -0.329 5.329 15 C -0.395 4.395 16 H 0.091 0.909 17 C -0.245 4.245 18 N -0.581 5.581 19 Si 0.800 3.200 20 H -0.206 1.206 21 H -0.225 1.225 22 H -0.194 1.194 23 C 0.028 3.972 24 C 0.033 3.967 25 H 0.089 0.911 26 O -0.380 6.380 27 H 0.132 0.868 28 H 0.113 0.887 29 H 0.143 0.857 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.253 0.747 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.024 0.976 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.011 0.989 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -14.688 -19.481 -1.059 24.420 hybrid contribution 1.442 0.571 1.025 1.859 sum -13.246 -18.910 -0.034 23.088 Atomic orbital electron populations 1.24084 0.95913 1.02726 0.99789 1.22824 0.96159 0.97638 1.01053 1.20648 0.97828 0.96534 0.98282 1.22670 0.94258 0.85227 0.99182 1.87967 1.55152 1.39381 1.49552 1.22275 0.93658 0.93872 0.92853 1.21049 0.79580 0.89111 0.81014 1.90708 1.64854 1.54465 1.35812 1.45731 1.39632 1.19099 1.30825 1.20637 0.90230 0.83406 0.99210 0.93071 1.22198 0.98093 0.94824 1.01148 1.21044 0.85931 0.95549 0.96023 1.44261 1.10032 1.33537 1.45032 1.19566 0.92263 1.21179 1.06447 0.90874 1.25861 0.97977 1.00469 1.00194 1.70195 1.04519 1.53043 1.30375 0.85204 0.77515 0.77909 0.79410 1.20644 1.22535 1.19371 1.21242 0.94342 0.85823 0.95774 1.22542 0.90061 0.88553 0.95583 0.91140 1.86391 1.31633 1.56297 1.63696 0.86769 0.88698 0.85688 0.91674 0.90976 0.91205 0.91527 0.87372 0.86949 0.74708 0.90269 0.91350 0.91390 0.97599 0.93915 0.90936 0.98922 0.75800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 14.32 67.78 0.97 -1.13 16 2 C -0.16 -1.92 9.52 25.64 0.24 -1.67 16 3 C -0.10 -1.55 6.03 29.85 0.18 -1.37 16 4 C 0.06 0.99 5.92 71.98 0.43 1.42 16 5 O -0.40 -9.92 9.88 -129.94 -1.28 -11.20 16 6 C 0.05 1.03 6.42 71.23 0.46 1.49 16 7 C 0.51 15.16 7.87 87.65 0.69 15.85 16 8 O -0.58 -23.98 16.16 16.00 0.26 -23.72 16 9 N -0.70 -19.21 4.92 -442.40 -2.18 -21.38 16 10 C 0.17 6.07 2.12 45.02 0.10 6.16 16 11 H 0.05 2.23 7.58 -2.38 -0.02 2.21 16 12 C -0.12 -4.32 5.65 30.67 0.17 -4.15 16 13 C 0.14 6.01 6.51 86.36 0.56 6.57 16 14 N -0.60 -29.80 2.99 -699.10 -2.09 -31.90 16 15 C -0.26 -14.07 9.59 84.03 0.81 -13.26 16 16 H 0.07 3.76 7.89 -2.91 -0.02 3.73 16 17 C -0.05 -2.67 4.91 84.86 0.42 -2.26 16 18 N -0.94 -53.97 11.19 21.65 0.24 -53.73 16 19 Si 0.97 43.19 29.59 68.60 2.03 45.22 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 23 C 0.16 7.29 4.94 86.36 0.43 7.72 16 24 C 0.09 3.36 3.14 30.67 0.10 3.45 16 25 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 26 O -0.57 -18.43 13.16 -148.98 -1.96 -20.39 16 27 H 0.11 0.90 8.06 -2.91 -0.02 0.88 16 28 H 0.09 1.10 7.84 -2.91 -0.02 1.07 16 29 H 0.13 1.12 8.06 -2.91 -0.02 1.10 16 30 H 0.06 1.18 7.79 -2.39 -0.02 1.16 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.42 8.29 8.60 -92.71 -0.80 7.49 16 37 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.07 2.76 7.93 -2.38 -0.02 2.74 16 40 H 0.01 0.27 8.14 -2.39 -0.02 0.26 16 41 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 42 H 0.07 3.71 6.03 -2.39 -0.01 3.70 16 43 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 44 H 0.39 9.86 9.08 -74.06 -0.67 9.18 16 Total: -1.00 -73.90 364.74 0.08 -73.81 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -0.48 Total: 24.48 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 5.54 Total: 18.82 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -4.03 Total: -107.00 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -2.99 Total: -55.32 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -73.90 0.08 -73.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100137072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.456 kcal (2) G-P(sol) polarization free energy of solvation -73.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds