Wall clock time and date at job start Tue Mar 31 2020 03:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99921 * 2 1 4 4 C 1.53005 * 109.47270 * 124.99495 * 3 2 1 5 5 O 1.42897 * 109.46862 * 179.97438 * 4 3 2 6 6 C 1.42906 * 113.99593 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46770 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00526 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00124 * 180.02562 * 7 6 5 10 10 C 1.46495 * 120.00556 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.45926 * 34.99755 * 10 9 7 12 12 C 1.53043 * 109.45633 * 275.02796 * 10 9 7 13 13 C 1.53193 * 109.31046 * 178.61160 * 12 10 9 14 14 N 1.46927 * 108.77910 * 54.63669 * 13 12 10 15 15 C 1.36930 * 120.63383 * 126.40981 * 14 13 12 16 16 H 1.08006 * 120.00344 * 207.67766 * 15 14 13 17 17 C 1.38816 * 120.00026 * 27.67725 * 15 14 13 18 18 N 1.31618 * 120.00026 * 17.35668 * 17 15 14 19 19 Si 1.86802 * 120.00056 * 197.35499 * 17 15 14 20 20 H 1.48501 * 109.47138 * 60.00434 * 19 17 15 21 21 H 1.48500 * 109.47121 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47318 * 300.00313 * 19 17 15 23 23 C 1.46925 * 118.73645 * 306.39486 * 14 13 12 24 24 C 1.53041 * 109.46516 * 154.97583 * 10 9 7 25 25 H 1.08999 * 109.49397 * 61.43090 * 24 10 9 26 26 O 1.42904 * 109.49327 * 301.33619 * 24 10 9 27 27 H 1.07997 * 120.00107 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.99637 * 179.72565 * 1 2 3 29 29 H 1.07997 * 120.00107 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.46910 * 244.99364 * 3 2 1 31 31 H 1.08994 * 109.47276 * 4.99713 * 3 2 1 32 32 H 1.09000 * 109.47125 * 300.00317 * 4 3 2 33 33 H 1.09003 * 109.46648 * 59.99800 * 4 3 2 34 34 H 1.08996 * 109.47395 * 300.00457 * 6 5 4 35 35 H 1.09000 * 109.46809 * 60.00807 * 6 5 4 36 36 H 0.97006 * 119.99646 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.50284 * 298.56073 * 12 10 9 38 38 H 1.09001 * 109.50086 * 58.62942 * 12 10 9 39 39 H 1.09002 * 109.58913 * 174.42185 * 13 12 10 40 40 H 1.09003 * 109.59062 * 294.70595 * 13 12 10 41 41 H 0.96997 * 120.00372 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.58943 * 173.39473 * 23 14 13 43 43 H 1.09005 * 109.58620 * 293.81489 * 23 14 13 44 44 H 0.96696 * 113.99839 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 8 3.7498 2.5705 1.1813 6 6 4.6885 2.6998 2.2511 7 6 5.3805 4.0349 2.1535 8 8 5.0975 4.8006 1.2566 9 7 6.3140 4.3782 3.0630 10 6 6.9864 5.6763 2.9685 11 1 6.2846 6.4225 2.5959 12 6 8.1726 5.5673 2.0077 13 6 8.8522 6.9347 1.8846 14 7 9.2065 7.4095 3.2291 15 6 10.4891 7.7915 3.5187 16 1 10.8621 7.7093 4.5290 17 6 11.3102 8.2843 2.5138 18 7 10.7855 8.7059 1.3828 19 14 13.1599 8.3492 2.7667 20 1 13.6747 6.9777 3.0101 21 1 13.8058 8.9129 1.5541 22 1 13.4697 9.2091 3.9371 23 6 8.1582 7.4670 4.2570 24 6 7.4866 6.0935 4.3534 25 1 8.2073 5.3605 4.7158 26 8 6.3824 6.1651 5.2577 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9353 -0.0045 29 1 1.8500 -0.9353 0.0004 30 1 2.6213 1.4026 -0.9314 31 1 1.3586 2.1316 0.0895 32 1 2.4771 1.2357 2.1131 33 1 3.7399 0.5066 1.0922 34 1 4.1646 2.6313 3.2044 35 1 5.4275 1.9014 2.1844 36 1 6.5407 3.7657 3.7802 37 1 8.8869 4.8394 2.3925 38 1 7.8188 5.2468 1.0277 39 1 9.7547 6.8412 1.2806 40 1 8.1689 7.6414 1.4136 41 1 11.3591 9.0506 0.6807 42 1 8.6027 7.7247 5.2183 43 1 7.4173 8.2177 3.9818 44 1 6.6265 6.4243 6.1567 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100137074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:02 Heat of formation + Delta-G solvation = -92.611857 kcal Electronic energy + Delta-G solvation = -24216.985376 eV Core-core repulsion = 20556.620023 eV Total energy + Delta-G solvation = -3660.365353 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.83128 -38.40167 -37.50062 -35.41889 -35.24750 -34.26674 -32.01224 -30.47587 -29.79908 -28.68220 -27.30589 -24.90006 -23.26240 -22.42758 -21.88097 -20.39359 -20.06867 -19.47218 -17.37740 -17.01315 -16.84517 -16.63281 -16.40660 -15.56073 -15.43381 -14.92195 -14.63449 -14.31712 -13.92895 -13.74276 -13.59726 -13.22934 -13.20475 -12.74143 -12.65566 -12.27687 -12.04952 -11.73741 -11.57592 -11.48838 -11.39050 -11.11712 -10.86655 -10.67745 -10.34901 -10.27609 -9.94780 -9.90288 -9.78767 -9.73448 -9.69089 -9.37175 -8.75074 -8.45318 -6.78218 -5.85251 -3.29467 1.87071 2.82450 2.89133 3.34613 3.40921 3.41633 3.90858 4.36059 4.50679 4.61537 4.74566 4.79068 4.90841 4.98446 5.06314 5.08605 5.13133 5.28969 5.31964 5.47757 5.49452 5.55031 5.63652 5.73346 5.76628 5.96649 6.11206 6.25421 6.31373 6.38318 6.47441 6.52171 6.66469 6.76812 6.80678 6.93664 7.28703 7.60675 7.72009 7.73697 7.90440 8.37055 8.46352 9.12466 9.74975 10.30913 11.23294 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.030011 B = 0.002596 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.754295 B =10783.264021 C =11327.572009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.153 4.153 3 C -0.094 4.094 4 C 0.065 3.935 5 O -0.363 6.363 6 C 0.046 3.954 7 C 0.511 3.489 8 O -0.521 6.521 9 N -0.716 5.716 10 C 0.165 3.835 11 H 0.088 0.912 12 C -0.147 4.147 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.261 4.261 16 H 0.067 0.933 17 C 0.005 3.995 18 N -0.899 5.899 19 Si 0.905 3.095 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.121 3.879 24 C 0.080 3.920 25 H 0.056 0.944 26 O -0.571 6.571 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.396 0.604 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.024 0.976 41 H 0.257 0.743 42 H 0.060 0.940 43 H 0.029 0.971 44 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.908 -16.871 3.809 22.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.171 4.171 3 C -0.132 4.132 4 C -0.012 4.012 5 O -0.281 6.281 6 C -0.034 4.034 7 C 0.295 3.705 8 O -0.395 6.395 9 N -0.368 5.368 10 C 0.061 3.939 11 H 0.106 0.894 12 C -0.187 4.187 13 C 0.044 3.956 14 N -0.312 5.312 15 C -0.390 4.390 16 H 0.084 0.916 17 C -0.194 4.194 18 N -0.542 5.542 19 Si 0.735 3.265 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.208 1.208 23 C -0.007 4.007 24 C 0.019 3.981 25 H 0.074 0.926 26 O -0.376 6.376 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.229 0.771 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.042 0.958 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.047 0.953 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -14.395 -16.245 2.313 21.829 hybrid contribution 1.449 -0.363 1.170 1.898 sum -12.946 -16.608 3.483 21.344 Atomic orbital electron populations 1.23913 0.95905 1.02068 1.00682 1.22811 0.96018 0.97992 1.00296 1.20650 0.97989 0.95870 0.98643 1.22481 0.93992 0.86225 0.98490 1.88015 1.54351 1.37245 1.48480 1.22209 0.93050 0.96351 0.91768 1.20130 0.79877 0.88010 0.82474 1.90739 1.63263 1.52133 1.33410 1.45977 1.40463 1.20169 1.30146 1.21008 0.94580 0.83920 0.94402 0.89396 1.22609 0.95910 1.02196 0.97993 1.20836 0.99038 0.88583 0.87105 1.44037 1.05216 1.74690 1.07231 1.19110 0.87193 1.37191 0.95504 0.91570 1.25080 0.98799 0.98023 0.97538 1.70024 1.34097 1.43249 1.06832 0.86338 0.85274 0.77852 0.77082 1.20962 1.21557 1.20831 1.21528 0.91947 0.92830 0.94395 1.22784 0.87128 0.99581 0.88591 0.92558 1.86482 1.35434 1.92285 1.23367 0.88358 0.88335 0.87189 0.89831 0.90424 0.93103 0.93079 0.90463 0.90480 0.77110 0.92336 0.91873 0.88837 0.95755 0.93343 0.92146 0.95288 0.77999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.24 14.32 29.02 0.42 -0.83 16 2 C -0.15 -1.09 9.52 -36.02 -0.34 -1.43 16 3 C -0.09 -0.83 6.03 -27.88 -0.17 -1.00 16 4 C 0.06 0.60 5.92 37.16 0.22 0.82 16 5 O -0.36 -4.88 9.88 -55.14 -0.54 -5.42 16 6 C 0.05 0.53 6.42 36.01 0.23 0.76 16 7 C 0.51 8.18 7.87 -10.99 -0.09 8.09 16 8 O -0.52 -10.94 16.16 -14.35 -0.23 -11.17 16 9 N -0.72 -10.58 4.92 -53.77 -0.26 -10.85 16 10 C 0.16 2.98 2.12 -67.89 -0.14 2.84 16 11 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 12 C -0.15 -2.90 5.65 -26.61 -0.15 -3.05 16 13 C 0.17 4.10 5.31 -3.71 -0.02 4.08 16 14 N -0.59 -14.36 2.99 -172.31 -0.52 -14.87 16 15 C -0.26 -6.94 9.58 -15.06 -0.14 -7.08 16 16 H 0.07 1.70 7.89 -52.48 -0.41 1.29 16 17 C 0.00 0.14 4.91 -17.43 -0.09 0.05 16 18 N -0.90 -25.86 11.19 55.49 0.62 -25.24 16 19 Si 0.91 21.23 29.59 -169.99 -5.03 16.20 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 C 0.12 2.44 6.14 -3.71 -0.02 2.42 16 24 C 0.08 1.35 3.14 -26.61 -0.08 1.26 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 O -0.57 -8.38 13.16 -35.23 -0.46 -8.85 16 27 H 0.10 0.63 7.84 -52.49 -0.41 0.22 16 28 H 0.10 0.52 8.06 -52.49 -0.42 0.09 16 29 H 0.11 0.65 8.06 -52.49 -0.42 0.22 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.73 7.79 -51.93 -0.40 0.32 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.40 4.57 8.60 -40.82 -0.35 4.22 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.09 2.49 6.04 -51.93 -0.31 2.18 16 40 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.37 3.88 9.08 45.56 0.41 4.29 16 LS Contribution 364.74 15.07 5.50 5.50 Total: -1.00 -33.61 364.74 -7.81 -41.41 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.49 Total: 6.35 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -0.38 Total: 6.93 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.16 Total: -50.96 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -1.24 Total: -25.44 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.61 -7.81 -41.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100137074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.198 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds