Wall clock time and date at job start Tue Mar 31 2020 05:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 119.99992 * 2 1 4 4 O 1.42897 * 109.47304 * 135.00152 * 3 2 1 5 5 C 1.42908 * 114.00173 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47222 * 179.97438 * 5 4 3 7 7 O 1.21285 * 120.00402 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99991 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00002 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47074 * 179.97438 * 9 8 6 11 11 H 1.09009 * 108.56910 * 60.00068 * 10 9 8 12 12 C 1.46914 * 108.50984 * 177.87910 * 10 9 8 13 13 N 1.50117 * 106.77993 * 177.84211 * 12 10 9 14 14 C 1.36935 * 120.63610 * 111.32627 * 13 12 10 15 15 H 1.08006 * 120.00099 * 320.51931 * 14 13 12 16 16 C 1.38811 * 120.00135 * 140.52746 * 14 13 12 17 17 N 1.31617 * 120.00362 * 156.55581 * 16 14 13 18 18 Si 1.86799 * 119.99625 * 336.54608 * 16 14 13 19 19 H 1.48501 * 109.47083 * 95.55910 * 18 16 14 20 20 H 1.48502 * 109.47305 * 215.55638 * 18 16 14 21 21 H 1.48501 * 109.47607 * 335.55872 * 18 16 14 22 22 C 1.43426 * 118.72843 * 291.34658 * 13 12 10 23 23 C 1.55339 * 116.23560 * 89.35215 * 22 13 12 24 24 C 1.55184 * 108.87389 * 319.46697 * 23 22 13 25 25 O 1.39642 * 110.56917 * 322.14365 * 24 23 22 26 26 H 1.08001 * 120.00109 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.99907 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.00503 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47351 * 14.99512 * 3 2 1 30 30 H 1.09001 * 109.47112 * 254.99919 * 3 2 1 31 31 H 1.09002 * 109.47349 * 59.99223 * 5 4 3 32 32 H 1.08998 * 109.46816 * 299.99734 * 5 4 3 33 33 H 0.96991 * 119.99829 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.47006 * 59.99938 * 9 8 6 35 35 H 1.08998 * 109.47171 * 299.99868 * 9 8 6 36 36 H 1.09003 * 109.99480 * 297.16311 * 12 10 9 37 37 H 1.09004 * 109.99164 * 58.52829 * 12 10 9 38 38 H 0.97001 * 120.00087 * 179.97438 * 17 16 14 39 39 H 1.08997 * 108.12558 * 327.60176 * 22 13 12 40 40 H 1.08990 * 107.96665 * 210.98594 * 22 13 12 41 41 H 1.08995 * 109.56916 * 199.64643 * 23 22 13 42 42 H 1.09001 * 109.56628 * 79.28653 * 23 22 13 43 43 H 1.09001 * 109.25711 * 201.86225 * 24 23 22 44 44 H 1.08998 * 109.25852 * 82.42503 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9077 2.4354 1.0328 6 6 4.9933 2.2573 2.0627 7 8 5.0886 1.2111 2.6689 8 7 5.8584 3.2607 2.3103 9 6 6.9141 3.0875 3.3112 10 6 7.7510 4.3654 3.3962 11 1 7.0980 5.1895 3.6840 12 6 8.7694 4.1875 4.4400 13 7 9.5992 5.4384 4.4536 14 6 9.5439 6.3010 5.5157 15 1 8.5981 6.5079 5.9946 16 6 10.7031 6.9096 5.9768 17 7 10.6312 8.0403 6.6466 18 14 12.3653 6.1236 5.6468 19 1 12.9671 6.7298 4.4321 20 1 13.2605 6.3520 6.8094 21 1 12.1897 4.6640 5.4365 22 6 10.4509 5.7129 3.3327 23 6 9.8164 6.5260 2.1712 24 6 8.3650 6.0265 1.9430 25 8 8.2910 4.6419 2.1082 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3855 2.1161 0.2659 30 1 2.4755 1.4868 -0.9927 31 1 3.2678 3.2696 1.3204 32 1 4.3580 2.6409 0.0617 33 1 5.7825 4.0973 1.8254 34 1 7.5539 2.2531 3.0237 35 1 6.4639 2.8823 4.2824 36 1 8.2897 4.0479 5.4088 37 1 9.3964 3.3270 4.2062 38 1 11.4413 8.4653 6.9691 39 1 10.7988 4.7616 2.9302 40 1 11.3190 6.2624 3.6967 41 1 10.3999 6.3802 1.2622 42 1 9.8016 7.5843 2.4318 43 1 8.0505 6.2853 0.9319 44 1 7.7015 6.5100 2.6600 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149430336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:29 Heat of formation + Delta-G solvation = -67.281571 kcal Electronic energy + Delta-G solvation = -24407.995418 eV Core-core repulsion = 20748.728469 eV Total energy + Delta-G solvation = -3659.266950 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.04670 -39.22814 -37.92109 -35.35973 -34.82108 -34.17022 -32.36995 -31.78466 -29.54886 -28.33838 -26.22688 -25.65549 -24.99484 -22.51514 -21.26578 -20.73881 -20.26686 -19.98720 -17.51430 -17.24343 -17.03243 -16.65900 -15.99412 -15.80290 -15.68638 -15.34002 -14.82821 -14.58224 -14.31773 -14.09333 -13.73035 -13.37340 -13.18028 -12.93028 -12.54653 -12.46353 -12.43883 -12.29671 -11.92738 -11.65084 -11.35203 -11.26341 -10.81154 -10.55337 -10.42999 -10.32603 -10.23846 -9.88820 -9.77538 -9.69582 -9.64438 -9.09117 -9.03256 -8.54424 -6.87544 -6.09312 -3.53837 1.75043 2.57246 2.76971 3.29043 3.43696 3.50917 3.81401 4.19707 4.46636 4.53693 4.68851 4.72653 4.73654 4.84334 4.88177 5.00016 5.11915 5.15269 5.32456 5.32992 5.47831 5.56158 5.68467 5.75814 5.81481 5.95037 5.99929 6.11570 6.18611 6.22150 6.23920 6.41723 6.45110 6.53423 6.58007 6.73067 6.75798 6.82252 7.46415 7.58565 7.99240 8.18801 8.25580 8.90866 9.61772 10.06336 11.05518 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.037779 B = 0.002627 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.966280 B =10657.116336 C =10869.534991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.086 3.914 4 O -0.359 6.359 5 C 0.044 3.956 6 C 0.511 3.489 7 O -0.524 6.524 8 N -0.718 5.718 9 C 0.118 3.882 10 C 0.063 3.937 11 H 0.070 0.930 12 C 0.112 3.888 13 N -0.599 5.599 14 C -0.275 4.275 15 H 0.076 0.924 16 C 0.042 3.958 17 N -0.894 5.894 18 Si 0.879 3.121 19 H -0.286 1.286 20 H -0.300 1.300 21 H -0.269 1.269 22 C 0.151 3.849 23 C -0.169 4.169 24 C 0.065 3.935 25 O -0.356 6.356 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.118 0.882 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.402 0.598 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.264 0.736 39 H 0.032 0.968 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.033 -8.380 -14.861 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.167 4.167 3 C 0.010 3.990 4 O -0.278 6.278 5 C -0.036 4.036 6 C 0.296 3.704 7 O -0.399 6.399 8 N -0.371 5.371 9 C -0.006 4.006 10 C 0.003 3.997 11 H 0.088 0.912 12 C -0.013 4.013 13 N -0.321 5.321 14 C -0.403 4.403 15 H 0.094 0.906 16 C -0.160 4.160 17 N -0.534 5.534 18 Si 0.709 3.291 19 H -0.213 1.213 20 H -0.228 1.228 21 H -0.194 1.194 22 C 0.024 3.976 23 C -0.210 4.210 24 C -0.012 4.012 25 O -0.274 6.274 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.136 0.864 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.236 0.764 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.772 -9.329 -14.290 22.571 hybrid contribution 0.959 0.673 -0.444 1.253 sum -13.812 -8.657 -14.734 21.973 Atomic orbital electron populations 1.23840 0.95498 1.02330 1.00089 1.22724 0.95619 0.98222 1.00159 1.21622 0.88794 0.96223 0.92401 1.88049 1.44303 1.34976 1.60438 1.22209 0.93289 0.89193 0.98885 1.20167 0.82462 0.84081 0.83717 1.90737 1.72383 1.26912 1.49846 1.45772 1.31662 1.17280 1.42429 1.21731 0.88234 0.98730 0.91942 1.21997 0.95370 0.96248 0.86057 0.91235 1.21054 0.93171 0.90127 0.96965 1.44105 1.51313 1.20316 1.16358 1.18692 0.93959 1.18863 1.08824 0.90625 1.25526 0.98108 0.96153 0.96163 1.69880 1.28865 1.15223 1.39452 0.86882 0.84892 0.81178 0.76172 1.21335 1.22823 1.19352 1.20634 0.92929 0.96660 0.87403 1.23499 0.96719 1.01326 0.99417 1.22427 0.97465 0.81729 0.99617 1.87598 1.84739 1.22866 1.32187 0.87704 0.88404 0.86385 0.92529 0.92061 0.90218 0.90142 0.76394 0.90737 0.90153 0.89985 0.93771 0.92571 0.94925 0.93915 0.92635 0.91545 0.92125 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.16 14.31 29.02 0.42 -0.75 16 2 C -0.15 -1.20 9.89 -36.02 -0.36 -1.56 16 3 C 0.09 0.69 6.35 36.01 0.23 0.92 16 4 O -0.36 -4.26 9.86 -55.14 -0.54 -4.81 16 5 C 0.04 0.42 6.42 36.00 0.23 0.65 16 6 C 0.51 6.80 7.91 -10.99 -0.09 6.71 16 7 O -0.52 -9.42 16.50 -14.35 -0.24 -9.66 16 8 N -0.72 -8.57 5.41 -60.29 -0.33 -8.89 16 9 C 0.12 1.63 5.24 -4.04 -0.02 1.61 16 10 C 0.06 0.97 2.13 -29.65 -0.06 0.91 16 11 H 0.07 1.09 6.77 -51.92 -0.35 0.74 16 12 C 0.11 2.08 5.58 -4.93 -0.03 2.05 16 13 N -0.60 -13.57 2.16 -174.50 -0.38 -13.94 16 14 C -0.28 -7.33 9.93 -15.06 -0.15 -7.48 16 15 H 0.08 2.16 8.06 -52.48 -0.42 1.74 16 16 C 0.04 1.18 5.27 -17.43 -0.09 1.09 16 17 N -0.89 -26.46 13.97 55.49 0.78 -25.68 16 18 Si 0.88 21.99 25.24 -169.99 -4.29 17.70 16 19 H -0.29 -6.99 6.74 56.52 0.38 -6.61 16 20 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.15 3.25 4.31 -4.43 -0.02 3.24 16 23 C -0.17 -3.04 6.75 -24.33 -0.16 -3.20 16 24 C 0.07 1.01 6.38 38.31 0.24 1.25 16 25 O -0.36 -5.65 9.44 -31.94 -0.30 -5.95 16 26 H 0.10 0.55 8.06 -52.49 -0.42 0.13 16 27 H 0.10 0.52 7.90 -52.49 -0.41 0.11 16 28 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 29 H 0.06 0.37 7.86 -51.93 -0.41 -0.04 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.40 3.86 8.26 -40.82 -0.34 3.52 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.48 8.00 -51.93 -0.42 1.07 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.03 0.68 7.99 -51.93 -0.41 0.26 16 40 H 0.04 1.02 3.44 -51.93 -0.18 0.84 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.94 6.66 -51.93 -0.35 0.60 16 LS Contribution 356.63 15.07 5.37 5.37 Total: -1.00 -33.38 356.63 -6.88 -40.26 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.10 Total: 0.17 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 0.14 Total: 5.44 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.07 Total: -48.52 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -1.08 Total: -20.42 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.29 Total: 17.70 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.38 -6.88 -40.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149430336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.019 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds