Wall clock time and date at job start Tue Mar 31 2020 05:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47135 * 2 1 4 4 C 1.53004 * 109.46796 * 119.99721 * 2 1 3 5 5 C 1.53000 * 109.47255 * 185.00425 * 4 2 1 6 6 C 1.52994 * 109.47317 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47140 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.47141 * 180.02562 * 7 6 5 9 9 C 1.36938 * 120.00145 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99744 * 0.02562 * 9 8 7 11 11 C 1.38808 * 120.00256 * 179.97438 * 9 8 7 12 12 N 1.31619 * 119.99990 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00282 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46990 * 60.00188 * 13 11 9 15 15 H 1.48494 * 109.47386 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47131 * 300.00268 * 13 11 9 17 17 N 1.46496 * 109.47446 * 239.99570 * 2 1 3 18 18 C 1.34767 * 120.00060 * 84.99990 * 17 2 1 19 19 O 1.21736 * 120.00290 * 0.02562 * 18 17 2 20 20 C 1.46382 * 120.00281 * 179.97438 * 18 17 2 21 21 C 1.33981 * 119.22960 * 0.02562 * 20 18 17 22 22 O 1.34994 * 121.68684 * 180.36650 * 21 20 18 23 23 C 1.43252 * 116.76481 * 342.82229 * 22 21 20 24 24 C 1.53546 * 108.08831 * 45.48898 * 23 22 21 25 25 O 1.36218 * 119.23326 * 180.02562 * 20 18 17 26 26 H 1.09006 * 109.47034 * 60.00333 * 1 2 3 27 27 H 1.09001 * 109.47135 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47720 * 300.00690 * 1 2 3 29 29 H 1.09001 * 109.46861 * 305.00089 * 4 2 1 30 30 H 1.09002 * 109.47378 * 64.99869 * 4 2 1 31 31 H 1.09001 * 109.46912 * 299.99633 * 5 4 2 32 32 H 1.09002 * 109.47381 * 59.99446 * 5 4 2 33 33 H 1.09001 * 109.47447 * 299.99942 * 6 5 4 34 34 H 1.09005 * 109.47058 * 60.00005 * 6 5 4 35 35 H 1.09001 * 109.47417 * 299.99984 * 7 6 5 36 36 H 1.08995 * 109.47264 * 60.00241 * 7 6 5 37 37 H 0.96997 * 119.99957 * 0.02562 * 8 7 6 38 38 H 0.96998 * 120.00293 * 179.97438 * 12 11 9 39 39 H 0.97005 * 119.99961 * 264.99959 * 17 2 1 40 40 H 1.07998 * 119.15485 * 0.35017 * 21 20 18 41 41 H 1.08996 * 109.73732 * 285.83605 * 23 22 21 42 42 H 1.09005 * 109.73644 * 165.13344 * 23 22 21 43 43 H 1.09004 * 109.75354 * 182.21784 * 24 23 22 44 44 H 1.08992 * 109.75815 * 61.47136 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.6132 1.3139 6 6 4.0746 -1.3338 2.5635 7 6 5.5994 -1.2264 2.6277 8 7 6.0877 -1.9170 3.8240 9 6 7.4298 -1.9533 4.0938 10 1 8.1282 -1.4724 3.4249 11 6 7.8924 -2.6071 5.2275 12 7 7.0411 -3.1918 6.0434 13 14 9.7230 -2.6560 5.5959 14 1 10.2347 -1.2701 5.7472 15 1 9.9547 -3.4088 6.8548 16 1 10.4350 -3.3274 4.4790 17 7 2.0184 -0.6907 -1.1961 18 6 2.1471 -0.0185 -2.3570 19 8 1.8580 1.1628 -2.4117 20 6 2.6357 -0.7084 -3.5520 21 6 2.9499 -2.0085 -3.4743 22 8 3.4116 -2.6915 -4.5433 23 6 3.1994 -2.0973 -5.8293 24 6 3.5728 -0.6109 -5.7351 25 8 2.7603 -0.0137 -4.7171 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6052 -0.2616 2.1370 30 1 1.7515 -1.7715 1.2058 31 1 3.9994 -1.0728 0.4263 32 1 3.8531 0.4371 1.3575 33 1 3.6399 -0.8740 3.4510 34 1 3.7863 -2.3842 2.5203 35 1 6.0339 -1.6866 1.7403 36 1 5.8882 -0.1762 2.6708 37 1 5.4604 -2.3485 4.4249 38 1 7.3643 -3.6490 6.8355 39 1 2.2491 -1.6319 -1.1524 40 1 2.8309 -2.5232 -2.5324 41 1 2.1515 -2.1965 -6.1123 42 1 3.8297 -2.5889 -6.5705 43 1 3.3839 -0.1223 -6.6911 44 1 4.6257 -0.5114 -5.4716 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168970810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:37 Heat of formation + Delta-G solvation = -94.784397 kcal Electronic energy + Delta-G solvation = -23796.070148 eV Core-core repulsion = 20135.610586 eV Total energy + Delta-G solvation = -3660.459562 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46632 -39.79605 -37.50906 -36.78093 -35.25180 -33.59128 -32.70324 -31.26634 -30.31425 -28.84924 -27.44924 -25.79181 -24.26575 -22.88230 -21.87594 -20.97822 -20.67554 -19.90917 -18.74971 -18.58657 -16.99165 -16.89778 -16.29026 -15.88804 -15.29827 -15.13284 -14.85672 -14.68099 -14.61091 -14.49566 -13.95005 -13.70081 -13.53037 -13.14839 -12.97562 -12.93953 -12.59431 -12.35782 -11.77106 -11.47871 -11.45364 -11.26468 -11.07828 -10.99849 -10.78522 -10.70640 -10.43440 -10.30227 -10.10964 -9.99869 -9.65470 -9.33570 -8.83895 -8.57919 -6.88876 -5.73943 -3.02319 0.96750 2.28336 2.72169 3.00715 3.41083 3.45878 3.49764 3.51178 3.85475 4.33745 4.39248 4.48188 4.51853 4.65112 4.72403 4.85862 4.88785 4.96735 5.05487 5.24989 5.38590 5.42249 5.44706 5.55726 5.60761 5.69294 5.77671 5.88626 5.95612 6.09904 6.17605 6.30387 6.31187 6.39311 6.39622 6.47704 6.87024 6.91153 6.94992 7.24961 7.71957 7.95673 8.45636 9.56192 10.15502 10.50092 11.49179 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.015487 B = 0.002637 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.589213 B =10616.333622 C =11871.879637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.092 0.908 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.936 5.936 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.715 5.715 18 C 0.577 3.423 19 O -0.523 6.523 20 C -0.071 4.071 21 C 0.008 3.992 22 O -0.299 6.299 23 C 0.014 3.986 24 C 0.018 3.982 25 O -0.286 6.286 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.016 0.984 36 H 0.017 0.983 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.398 0.602 40 H 0.179 0.821 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.277 2.184 -23.318 27.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.110 0.890 4 C -0.165 4.165 5 C -0.154 4.154 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.370 5.370 18 C 0.364 3.636 19 O -0.400 6.400 20 C -0.120 4.120 21 C -0.058 4.058 22 O -0.211 6.211 23 C -0.062 4.062 24 C -0.058 4.058 25 O -0.200 6.200 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.234 0.766 40 H 0.196 0.804 41 H 0.100 0.900 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.292 3.078 -23.416 27.605 hybrid contribution 1.049 -0.742 0.288 1.317 sum -13.243 2.336 -23.128 26.753 Atomic orbital electron populations 1.22191 0.95138 1.02219 1.02693 1.21107 0.93883 0.97841 0.83181 0.88988 1.21958 0.96932 1.00993 0.96634 1.21538 0.93905 1.01258 0.98665 1.21726 0.97262 1.00268 0.97090 1.20649 0.91012 0.95340 0.90547 1.42382 1.05319 1.64981 1.25212 1.19214 0.83944 1.28428 1.05452 0.91290 1.24745 0.97725 1.00986 0.97685 1.69650 1.32861 1.40811 1.15124 0.86254 0.85121 0.77487 0.77266 1.21272 1.21665 1.21268 1.45943 1.67860 1.13961 1.09262 1.17088 0.78212 0.86427 0.81923 1.90852 1.49311 1.15130 1.84674 1.20419 1.11570 0.90627 0.89366 1.23168 0.99707 0.90607 0.92366 1.86125 1.74765 1.46392 1.13811 1.23746 1.03519 0.94599 0.84294 1.23693 0.95738 0.93907 0.92502 1.86430 1.66895 1.45401 1.21272 0.92156 0.92375 0.91278 0.89909 0.91223 0.92163 0.91855 0.91999 0.92104 0.96638 0.96564 0.78350 0.93490 0.76574 0.80407 0.90025 0.85956 0.85973 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.48 37.16 0.35 -1.06 16 2 C 0.14 1.38 2.57 -67.93 -0.17 1.20 16 3 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 4 C -0.13 -1.19 4.75 -26.73 -0.13 -1.31 16 5 C -0.12 -1.39 5.10 -26.73 -0.14 -1.53 16 6 C -0.13 -1.96 5.33 -26.74 -0.14 -2.11 16 7 C 0.15 3.13 6.26 -4.04 -0.03 3.10 16 8 N -0.73 -19.23 5.60 -59.91 -0.34 -19.57 16 9 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 10 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 12 N -0.94 -28.77 13.06 55.49 0.72 -28.05 16 13 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 17 N -0.72 -6.68 4.46 -55.21 -0.25 -6.92 16 18 C 0.58 7.10 7.69 -12.99 -0.10 7.00 16 19 O -0.52 -8.55 16.58 -10.06 -0.17 -8.71 16 20 C -0.07 -0.77 6.61 -37.80 -0.25 -1.02 16 21 C 0.01 0.07 10.57 29.24 0.31 0.38 16 22 O -0.30 -2.53 10.47 -30.81 -0.32 -2.85 16 23 C 0.01 0.08 7.29 37.44 0.27 0.35 16 24 C 0.02 0.12 7.31 37.44 0.27 0.39 16 25 O -0.29 -3.29 10.28 -45.77 -0.47 -3.76 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.38 10.43 7.67 -40.82 -0.31 10.11 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.40 2.71 6.44 -40.82 -0.26 2.45 16 40 H 0.18 1.02 6.08 -52.49 -0.32 0.71 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.12 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 365.45 15.07 5.51 5.51 Total: -1.00 -36.38 365.45 -7.48 -43.87 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.16 Total: 4.96 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 0.01 Total: -2.21 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.14 Total: -54.53 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.96 Total: -15.32 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.38 -7.48 -43.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168970810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.919 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds