Wall clock time and date at job start Tue Mar 31 2020 05:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47240 * 2 1 4 4 O 1.45202 * 109.46662 * 119.99732 * 2 1 3 5 5 C 1.34230 * 116.99836 * 90.00373 * 4 2 1 6 6 O 1.20833 * 119.99930 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00262 * 180.27336 * 5 4 2 8 8 C 1.50693 * 109.47486 * 179.72204 * 7 5 4 9 9 O 1.21284 * 120.00293 * 359.97438 * 8 7 5 10 10 N 1.34780 * 120.00288 * 179.97438 * 8 7 5 11 11 C 1.47081 * 120.87619 * 359.72072 * 10 8 7 12 12 C 1.53700 * 108.27647 * 128.75579 * 11 10 8 13 13 N 1.46904 * 109.25607 * 54.08135 * 12 11 10 14 14 C 1.46905 * 110.99932 * 172.61164 * 13 12 11 15 15 C 1.50694 * 109.46821 * 294.29729 * 14 13 12 16 16 H 1.08000 * 120.00361 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99911 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00201 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00015 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47297 * 89.99839 * 19 17 15 21 21 H 1.48493 * 109.47108 * 210.00288 * 19 17 15 22 22 H 1.48504 * 109.47032 * 330.00046 * 19 17 15 23 23 C 1.46910 * 111.26626 * 296.75360 * 13 12 11 24 24 C 1.47073 * 120.88390 * 179.97438 * 10 8 7 25 25 H 1.08994 * 109.47916 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46969 * 300.00449 * 1 2 3 27 27 H 1.09000 * 109.47394 * 59.99789 * 1 2 3 28 28 H 1.09000 * 109.46969 * 239.99551 * 2 1 3 29 29 H 1.09004 * 109.46776 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.46978 * 299.99670 * 3 2 1 31 31 H 1.09000 * 109.47506 * 59.99880 * 3 2 1 32 32 H 1.09004 * 109.46801 * 299.72165 * 7 5 4 33 33 H 1.09000 * 109.47461 * 59.71633 * 7 5 4 34 34 H 1.08997 * 109.62553 * 248.51892 * 11 10 8 35 35 H 1.08993 * 109.63248 * 9.10388 * 11 10 8 36 36 H 1.09005 * 109.64894 * 294.07729 * 12 11 10 37 37 H 1.09001 * 109.42432 * 173.94495 * 12 11 10 38 38 H 1.08998 * 109.47104 * 54.30025 * 14 13 12 39 39 H 1.08998 * 109.46748 * 174.29846 * 14 13 12 40 40 H 0.96996 * 120.00144 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.49596 * 303.14636 * 23 13 12 42 42 H 1.08999 * 109.49000 * 183.06496 * 23 13 12 43 43 H 1.09005 * 109.63150 * 350.89831 * 24 10 8 44 44 H 1.09003 * 109.62979 * 111.47851 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0139 -0.6845 1.1856 5 6 2.2170 -2.0075 1.0852 6 8 1.9973 -2.5749 0.0413 7 6 2.7127 -2.7863 2.2763 8 6 2.8499 -4.2401 1.9043 9 8 2.5721 -4.6079 0.7824 10 7 3.2814 -5.1319 2.8182 11 6 3.6294 -4.7062 4.1823 12 6 2.8810 -5.6101 5.1750 13 7 3.1777 -7.0159 4.8688 14 6 2.6250 -7.9068 5.8978 15 6 3.3301 -7.6608 7.2066 16 1 4.1105 -6.9167 7.2681 17 6 2.9790 -8.3855 8.3257 18 7 2.0291 -9.2919 8.2509 19 14 3.8526 -8.0801 9.9484 20 1 3.1314 -7.0279 10.7085 21 1 3.8767 -9.3352 10.7415 22 1 5.2445 -7.6343 9.6850 23 6 2.6877 -7.3854 3.5341 24 6 3.4219 -6.5554 2.4762 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8900 32 1 3.6826 -2.3975 2.5865 33 1 2.0021 -2.6867 3.0969 34 1 4.7046 -4.8033 4.3330 35 1 3.3282 -3.6693 4.3305 36 1 1.8080 -5.4380 5.0902 37 1 3.2073 -5.3822 6.1897 38 1 1.5597 -7.7084 6.0160 39 1 2.7701 -8.9441 5.5962 40 1 1.7823 -9.8021 9.0381 41 1 1.6174 -7.1886 3.4722 42 1 2.8738 -8.4450 3.3588 43 1 2.9834 -6.7415 1.4957 44 1 4.4775 -6.8270 2.4658 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184446167.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:57 Heat of formation + Delta-G solvation = -112.450772 kcal Electronic energy + Delta-G solvation = -24470.436443 eV Core-core repulsion = 20809.210810 eV Total energy + Delta-G solvation = -3661.225633 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.91535 -39.72346 -37.67119 -36.63519 -34.43217 -33.50411 -32.53268 -31.52439 -30.20230 -28.14742 -27.63782 -25.55095 -23.58457 -23.04253 -21.97470 -20.99181 -20.40406 -18.63859 -18.15697 -16.77431 -16.57414 -16.47630 -16.31233 -15.44733 -15.26943 -14.80364 -14.51361 -14.44826 -13.93986 -13.84408 -13.66267 -13.62100 -13.19973 -13.00194 -12.65248 -12.46458 -12.34738 -12.20353 -11.97512 -11.91009 -11.32772 -11.23048 -11.11461 -11.03661 -10.78779 -10.77740 -10.68272 -10.57297 -10.42623 -9.91255 -9.55351 -9.30969 -8.54245 -8.45779 -7.36918 -6.09270 -4.11643 2.12650 2.24811 2.65923 3.18743 3.26892 3.34000 3.37308 4.23720 4.35890 4.45196 4.54691 4.57472 4.74131 4.81242 4.92117 4.97820 5.17155 5.22389 5.26918 5.34992 5.35798 5.41720 5.46392 5.51351 5.61088 5.67863 5.73220 5.81399 5.83958 6.00851 6.25701 6.32370 6.40689 6.42074 6.64301 7.18451 7.24225 7.46863 7.68646 7.70661 7.97917 8.08301 8.23430 8.43548 8.95516 9.53078 11.01507 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.026589 B = 0.002762 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.798780 B =10133.558821 C =10697.342847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.081 3.919 3 C -0.149 4.149 4 O -0.358 6.358 5 C 0.459 3.541 6 O -0.462 6.462 7 C -0.137 4.137 8 C 0.512 3.488 9 O -0.510 6.510 10 N -0.608 5.608 11 C 0.106 3.894 12 C 0.049 3.951 13 N -0.536 5.536 14 C 0.193 3.807 15 C -0.510 4.510 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.041 3.959 24 C 0.121 3.879 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.026 0.974 37 H 0.098 0.902 38 H -0.009 1.009 39 H 0.032 0.968 40 H 0.262 0.738 41 H 0.027 0.973 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.541 18.840 -12.497 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.026 3.974 3 C -0.206 4.206 4 O -0.276 6.276 5 C 0.299 3.701 6 O -0.345 6.345 7 C -0.178 4.178 8 C 0.297 3.703 9 O -0.384 6.384 10 N -0.343 5.343 11 C -0.017 4.017 12 C -0.080 4.080 13 N -0.261 5.261 14 C 0.069 3.931 15 C -0.549 4.549 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.089 4.089 24 C -0.002 4.002 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.116 0.884 38 H 0.009 0.991 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.712 18.277 -13.362 22.651 hybrid contribution -0.562 0.112 1.091 1.232 sum 0.150 18.388 -12.271 22.107 Atomic orbital electron populations 1.22212 0.94330 1.03242 1.03012 1.22707 0.94614 0.92934 0.87129 1.21889 1.02100 0.93473 1.03137 1.86537 1.77590 1.22221 1.41297 1.22930 0.75974 0.81301 0.89927 1.90810 1.44843 1.69124 1.29713 1.21265 1.06074 0.93324 0.97091 1.19785 0.78397 0.86798 0.85290 1.90835 1.48350 1.79425 1.19835 1.48183 1.65513 1.08485 1.12095 1.22170 1.00981 0.98110 0.80453 1.22423 0.96827 0.89434 0.99324 1.62088 1.59781 1.02543 1.01698 1.19729 0.93105 0.91569 0.88729 1.21127 1.19618 1.21073 0.93070 0.91777 1.25003 0.95244 0.95122 0.99235 1.69954 1.29982 1.23792 1.29916 0.86492 0.80036 0.77582 0.83273 1.20728 1.21256 1.19730 1.22410 0.96397 0.99490 0.90574 1.21750 1.01208 0.78444 0.98767 0.91844 0.91498 0.90748 0.89715 0.91673 0.90422 0.91341 0.84985 0.84938 0.90265 0.90200 0.95614 0.88370 0.99103 0.94996 0.92835 0.95506 0.89984 0.89343 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.55 37.16 0.35 -1.03 16 2 C 0.08 0.74 3.18 -26.73 -0.09 0.65 16 3 C -0.15 -0.93 9.57 37.16 0.36 -0.57 16 4 O -0.36 -3.86 9.88 -39.26 -0.39 -4.24 16 5 C 0.46 5.85 7.92 36.00 0.29 6.14 16 6 O -0.46 -7.72 13.40 -26.87 -0.36 -8.08 16 7 C -0.14 -1.43 4.66 -29.04 -0.14 -1.56 16 8 C 0.51 7.52 7.70 -10.99 -0.08 7.44 16 9 O -0.51 -9.63 13.64 -18.96 -0.26 -9.89 16 10 N -0.61 -8.74 3.00 -172.21 -0.52 -9.26 16 11 C 0.11 1.35 6.53 -3.36 -0.02 1.33 16 12 C 0.05 0.84 5.47 -3.46 -0.02 0.82 16 13 N -0.54 -10.78 4.62 -235.47 -1.09 -11.87 16 14 C 0.19 4.82 4.72 -4.98 -0.02 4.80 16 15 C -0.51 -13.60 8.41 -34.44 -0.29 -13.89 16 16 H 0.06 1.66 7.13 -52.49 -0.37 1.29 16 17 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 18 N -0.90 -25.99 13.29 55.43 0.74 -25.26 16 19 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 23 C 0.04 0.71 5.62 -3.71 -0.02 0.69 16 24 C 0.12 1.85 6.59 -3.62 -0.02 1.83 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.87 7.16 -51.93 -0.37 0.50 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.13 0.96 7.99 -51.93 -0.41 0.55 16 33 H 0.13 1.07 7.67 -51.93 -0.40 0.67 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.73 6.02 -51.93 -0.31 0.42 16 36 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.10 1.77 6.67 -51.93 -0.35 1.43 16 38 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 39 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 43 H 0.09 1.38 7.06 -51.93 -0.37 1.01 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 357.59 15.07 5.39 5.39 Total: -1.00 -33.87 357.59 -8.51 -42.38 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -7.20 Total: -3.01 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 0.19 Total: 8.06 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.87 Total: -46.39 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -1.01 Total: -22.22 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.87 -8.51 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184446167.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.075 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds