Wall clock time and date at job start Tue Mar 31 2020 05:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00186 * 2 1 4 4 O 1.42898 * 109.47171 * 135.00344 * 3 2 1 5 5 C 1.42902 * 114.00186 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47230 * 179.97438 * 5 4 3 7 7 C 1.52993 * 109.47240 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47461 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99388 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00218 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99766 * 179.97438 * 10 8 7 12 12 H 1.08994 * 110.88822 * 34.30221 * 11 10 8 13 13 C 1.54907 * 111.00399 * 270.41268 * 11 10 8 14 14 N 1.47466 * 104.81279 * 204.94978 * 13 11 10 15 15 C 1.36939 * 125.63361 * 204.05425 * 14 13 11 16 16 H 1.07995 * 119.99817 * 0.02562 * 15 14 13 17 17 C 1.38808 * 119.99912 * 180.02562 * 15 14 13 18 18 N 1.31618 * 120.00250 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99628 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47178 * 60.00443 * 19 17 15 21 21 H 1.48508 * 109.47118 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47504 * 300.00242 * 19 17 15 23 23 C 1.47025 * 108.72163 * 24.07599 * 14 13 11 24 24 C 1.54326 * 107.26969 * 358.97348 * 23 14 13 25 25 H 1.08997 * 110.72296 * 96.17299 * 24 23 14 26 26 O 1.42901 * 110.87298 * 219.37418 * 24 23 14 27 27 H 1.07994 * 119.99999 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.99469 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.99954 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47152 * 15.00128 * 3 2 1 31 31 H 1.09001 * 109.46980 * 255.00228 * 3 2 1 32 32 H 1.09001 * 109.46918 * 299.99649 * 5 4 3 33 33 H 1.08999 * 109.46857 * 59.99535 * 5 4 3 34 34 H 1.08998 * 109.47349 * 300.00228 * 6 5 4 35 35 H 1.09000 * 109.46950 * 59.99785 * 6 5 4 36 36 H 1.08998 * 109.47267 * 300.00440 * 7 6 5 37 37 H 1.09000 * 109.47194 * 60.00095 * 7 6 5 38 38 H 0.97003 * 119.99916 * 359.97438 * 10 8 7 39 39 H 1.08994 * 110.37208 * 323.75899 * 13 11 10 40 40 H 1.09008 * 110.36371 * 86.08436 * 13 11 10 41 41 H 0.97003 * 119.99543 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.88481 * 239.55674 * 23 14 13 43 43 H 1.09003 * 110.01348 * 118.46161 * 23 14 13 44 44 H 0.96701 * 114.00056 * 293.61339 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9079 2.4352 1.0328 6 6 5.0100 2.2544 2.0784 7 6 5.8467 3.5324 2.1639 8 6 6.9327 3.3541 3.1934 9 8 7.0278 2.3079 3.7994 10 7 7.7976 4.3576 3.4413 11 6 8.8530 4.1843 4.4425 12 1 9.2110 3.1549 4.4556 13 6 8.3636 4.6200 5.8461 14 7 9.5916 4.9823 6.5779 15 6 9.7390 4.9803 7.9393 16 1 8.9112 4.6955 8.5716 17 6 10.9525 5.3445 8.5065 18 7 11.9612 5.6921 7.7359 19 14 11.1533 5.3424 10.3637 20 1 10.9091 3.9740 10.8865 21 1 12.5327 5.7675 10.7129 22 1 10.1776 6.2846 10.9682 23 6 10.6312 5.3464 5.6040 24 6 10.0206 5.1762 4.1969 25 1 9.6455 6.1282 3.8215 26 8 10.9755 4.6188 3.2916 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5399 0.9354 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3856 2.1161 0.2660 31 1 2.4755 1.4868 -0.9927 32 1 4.3581 2.6407 0.0616 33 1 3.2679 3.2693 1.3205 34 1 4.5595 2.0490 3.0495 35 1 5.6500 1.4201 1.7911 36 1 6.2972 3.7374 1.1927 37 1 5.2069 4.3670 2.4509 38 1 7.7213 5.1945 2.9568 39 1 7.7016 5.4822 5.7665 40 1 7.8545 3.7944 6.3436 41 1 12.8091 5.9469 8.1324 42 1 11.4920 4.6874 5.7168 43 1 10.9356 6.3824 5.7531 44 1 11.7258 5.1995 3.1047 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192046396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:54 Heat of formation + Delta-G solvation = -117.971540 kcal Electronic energy + Delta-G solvation = -23598.962792 eV Core-core repulsion = 19937.497761 eV Total energy + Delta-G solvation = -3661.465032 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.05607 -39.51752 -39.03029 -36.68381 -35.58578 -35.31419 -34.03828 -33.53013 -30.36704 -29.11800 -28.03441 -26.57141 -25.94116 -23.16165 -22.35217 -21.86299 -21.29890 -20.74166 -19.11808 -18.45514 -18.03497 -17.50433 -17.39935 -17.20829 -16.50501 -16.40258 -16.08019 -15.73924 -15.35374 -15.01713 -14.69855 -14.46489 -14.31789 -14.09371 -13.76567 -13.48930 -13.28551 -13.16763 -12.98396 -12.90245 -12.72159 -12.70356 -12.14810 -12.12673 -11.89679 -11.89360 -11.79363 -11.53490 -11.13069 -10.80154 -10.77148 -10.75768 -10.22065 -10.13642 -8.98093 -7.89899 -5.27216 1.24504 1.44652 1.48388 1.54404 1.67746 2.07385 2.47007 2.89570 3.12775 3.30691 3.55191 3.70378 3.89916 3.98329 4.03545 4.06348 4.16683 4.20134 4.31381 4.38905 4.44625 4.50418 4.55553 4.56549 4.59773 4.64081 4.74159 4.81391 4.99176 5.04206 5.15893 5.29352 5.35654 5.42995 5.49756 5.65349 5.66646 5.73308 6.12504 6.31919 6.60370 6.87191 7.03661 7.32310 7.68151 8.30486 9.19503 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.027463 B = 0.002285 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.317265 B =12252.546341 C =13034.952883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.177 4.177 3 C 0.085 3.915 4 O -0.416 6.416 5 C 0.065 3.935 6 C -0.103 4.103 7 C -0.121 4.121 8 C 0.505 3.495 9 O -0.592 6.592 10 N -0.701 5.701 11 C 0.152 3.848 12 H 0.065 0.935 13 C 0.131 3.869 14 N -0.623 5.623 15 C -0.250 4.250 16 H 0.080 0.920 17 C -0.062 4.062 18 N -0.948 5.948 19 Si 0.982 3.018 20 H -0.281 1.281 21 H -0.290 1.290 22 H -0.274 1.274 23 C 0.160 3.840 24 C 0.092 3.908 25 H 0.098 0.902 26 O -0.570 6.570 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.419 0.581 39 H 0.045 0.955 40 H 0.029 0.971 41 H 0.250 0.750 42 H 0.018 0.982 43 H 0.027 0.973 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.029 -0.259 -20.300 27.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.195 4.195 3 C 0.009 3.991 4 O -0.336 6.336 5 C -0.011 4.011 6 C -0.141 4.141 7 C -0.160 4.160 8 C 0.294 3.706 9 O -0.472 6.472 10 N -0.354 5.354 11 C 0.045 3.955 12 H 0.083 0.917 13 C 0.004 3.996 14 N -0.351 5.351 15 C -0.379 4.379 16 H 0.098 0.902 17 C -0.255 4.255 18 N -0.596 5.596 19 Si 0.809 3.191 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.199 1.199 23 C 0.035 3.965 24 C 0.032 3.968 25 H 0.116 0.884 26 O -0.377 6.377 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.257 0.743 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.059 0.941 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -18.179 -1.597 -19.627 26.801 hybrid contribution 1.017 0.695 1.083 1.640 sum -17.162 -0.901 -18.545 25.283 Atomic orbital electron populations 1.24053 0.95142 1.03392 0.98147 1.22851 0.96340 0.98226 1.02083 1.21682 0.88640 0.96224 0.92553 1.87893 1.45605 1.38632 1.61510 1.22563 0.92415 0.87015 0.99075 1.21156 0.96285 0.97448 0.99240 1.21541 0.95120 1.00295 0.99034 1.21541 0.82870 0.82557 0.83623 1.90725 1.74021 1.29522 1.52947 1.45714 1.30681 1.18335 1.40645 1.21685 0.86955 0.99028 0.87872 0.91654 1.21948 0.89547 0.97261 0.90825 1.44526 1.09185 1.79377 1.01963 1.19404 0.97620 1.39200 0.81648 0.90213 1.25667 0.95656 1.01476 1.02727 1.70122 1.02799 1.52086 1.34591 0.85115 0.76697 0.77947 0.79322 1.20754 1.21593 1.19927 1.21629 0.90854 0.98070 0.85985 1.23150 0.88702 0.95544 0.89418 0.88406 1.86436 1.37697 1.48688 1.64904 0.86806 0.87196 0.87432 0.91523 0.91154 0.91041 0.91163 0.92790 0.92723 0.85258 0.85252 0.74254 0.93718 0.95230 0.94107 0.96355 0.95444 0.75340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 14.31 67.78 0.97 -0.89 16 2 C -0.18 -2.57 9.89 25.65 0.25 -2.31 16 3 C 0.08 1.20 6.35 71.24 0.45 1.65 16 4 O -0.42 -8.51 10.33 -148.98 -1.54 -10.05 16 5 C 0.07 0.97 5.94 71.98 0.43 1.40 16 6 C -0.10 -2.10 4.87 30.59 0.15 -1.95 16 7 C -0.12 -1.89 5.70 29.85 0.17 -1.72 16 8 C 0.51 14.14 7.83 87.66 0.69 14.83 16 9 O -0.59 -23.55 15.67 -3.03 -0.05 -23.60 16 10 N -0.70 -18.58 5.21 -435.97 -2.27 -20.85 16 11 C 0.15 5.66 3.09 46.38 0.14 5.81 16 12 H 0.07 2.97 7.63 -2.39 -0.02 2.95 16 13 C 0.13 5.67 6.93 86.85 0.60 6.27 16 14 N -0.62 -32.79 3.40 -691.87 -2.35 -35.14 16 15 C -0.25 -14.40 10.28 84.03 0.86 -13.53 16 16 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 17 C -0.06 -3.56 5.49 84.86 0.47 -3.09 16 18 N -0.95 -56.52 10.31 21.65 0.22 -56.30 16 19 Si 0.98 46.25 29.55 68.60 2.03 48.27 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 C 0.16 7.77 5.15 86.73 0.45 8.21 16 24 C 0.09 3.24 3.96 31.78 0.13 3.37 16 25 H 0.10 2.72 8.00 -2.39 -0.02 2.70 16 26 O -0.57 -18.69 13.40 -148.98 -2.00 -20.68 16 27 H 0.11 0.97 8.06 -2.91 -0.02 0.95 16 28 H 0.11 0.90 7.90 -2.91 -0.02 0.88 16 29 H 0.11 1.68 8.06 -2.91 -0.02 1.66 16 30 H 0.07 0.74 7.86 -2.39 -0.02 0.72 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 1.36 8.10 -2.39 -0.02 1.35 16 35 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 36 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.42 7.37 8.54 -92.71 -0.79 6.58 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.02 1.02 7.30 -2.39 -0.02 1.01 16 43 H 0.03 1.42 7.50 -2.39 -0.02 1.41 16 44 H 0.40 9.49 9.12 -74.06 -0.68 8.81 16 Total: -1.00 -80.22 368.28 -0.67 -80.90 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.48 Total: 19.41 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 5.76 Total: 18.04 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -4.40 Total: -112.29 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -3.58 Total: -54.33 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -80.22 -0.67 -80.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192046396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.076 kcal (2) G-P(sol) polarization free energy of solvation -80.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds