Wall clock time and date at job start Tue Mar 31 2020 05:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50704 * 119.99771 * 2 1 4 4 O 1.42896 * 109.46834 * 134.99927 * 3 2 1 5 5 C 1.42900 * 114.00015 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47311 * 180.02562 * 5 4 3 7 7 O 1.21275 * 119.99991 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99983 * 180.02562 * 6 5 4 9 9 C 1.47505 * 118.75450 * 359.97438 * 8 6 5 10 10 C 1.53582 * 111.02543 * 221.62764 * 9 8 6 11 11 C 1.51532 * 109.58168 * 39.98226 * 10 9 8 12 12 O 1.42159 * 108.76184 * 268.60204 * 11 10 9 13 13 C 1.38014 * 119.43761 * 87.22179 * 12 11 10 14 14 H 1.09002 * 109.46972 * 56.57667 * 13 12 11 15 15 C 1.53006 * 109.46968 * 176.57389 * 13 12 11 16 16 N 1.46501 * 109.46935 * 300.00487 * 15 13 12 17 17 C 1.36933 * 119.99817 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00077 * 0.02562 * 17 16 15 19 19 C 1.38817 * 120.00184 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99533 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00147 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47282 * 90.00512 * 21 19 17 23 23 H 1.48502 * 109.47200 * 210.00133 * 21 19 17 24 24 H 1.48502 * 109.47228 * 330.00403 * 21 19 17 25 25 C 1.45120 * 118.75757 * 180.02562 * 8 6 5 26 26 H 1.08000 * 119.99497 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00458 * 359.97438 * 1 2 3 28 28 H 1.07991 * 120.00143 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.46923 * 15.00350 * 3 2 1 30 30 H 1.08993 * 109.47251 * 255.00363 * 3 2 1 31 31 H 1.08997 * 109.47241 * 60.00100 * 5 4 3 32 32 H 1.09001 * 109.46964 * 300.00538 * 5 4 3 33 33 H 1.09000 * 109.16633 * 101.23385 * 9 8 6 34 34 H 1.08997 * 109.17216 * 342.02528 * 9 8 6 35 35 H 1.09004 * 109.45107 * 279.95052 * 10 9 8 36 36 H 1.09001 * 109.45527 * 160.01580 * 10 9 8 37 37 H 1.08992 * 109.59220 * 148.81559 * 11 10 9 38 38 H 1.09005 * 109.58794 * 28.37902 * 11 10 9 39 39 H 1.09002 * 109.47046 * 60.00324 * 15 13 12 40 40 H 1.09001 * 109.47183 * 180.02562 * 15 13 12 41 41 H 0.96996 * 120.00097 * 359.97438 * 16 15 13 42 42 H 0.96998 * 119.99666 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.45740 * 330.68427 * 25 8 6 44 44 H 1.09000 * 109.45789 * 210.73375 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9076 2.4353 1.0329 6 6 4.9940 2.2568 2.0620 7 8 5.0903 1.2101 2.6668 8 7 5.8586 3.2605 2.3103 9 6 5.7167 4.5216 1.5584 10 6 7.0877 5.0643 1.1288 11 6 7.9712 3.9167 0.6831 12 8 8.7131 3.4495 1.8021 13 6 8.1631 2.4901 2.6279 14 1 7.8970 1.6126 2.0384 15 6 9.1813 2.0951 3.6994 16 7 10.3824 1.5560 3.0567 17 6 11.4372 1.1341 3.8212 18 1 11.3835 1.1984 4.8979 19 6 12.5751 0.6228 3.2122 20 7 12.6402 0.5441 1.9000 21 14 14.0143 0.0480 4.2550 22 1 13.8451 -1.3906 4.5822 23 1 15.2793 0.2386 3.5009 24 1 14.0627 0.8389 5.5110 25 6 6.8946 3.0593 3.3064 26 1 -0.5399 -0.9354 -0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3854 2.1161 0.2661 30 1 2.4754 1.4869 -0.9926 31 1 3.2677 3.2694 1.3206 32 1 4.3578 2.6410 0.0617 33 1 5.2209 5.2601 2.1885 34 1 5.1086 4.3431 0.6716 35 1 7.5550 5.5767 1.9698 36 1 6.9586 5.7647 0.3037 37 1 8.6562 4.2622 -0.0911 38 1 7.3519 3.1092 0.2923 39 1 9.4473 2.9725 4.2889 40 1 8.7471 1.3370 4.3514 41 1 10.4304 1.4980 2.0897 42 1 13.4354 0.1872 1.4745 43 1 6.5411 2.3567 4.0611 44 1 7.1326 4.0116 3.7803 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200108466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:08 Heat of formation + Delta-G solvation = -75.273022 kcal Electronic energy + Delta-G solvation = -24686.183794 eV Core-core repulsion = 21026.570309 eV Total energy + Delta-G solvation = -3659.613485 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.64699 -38.82668 -37.78044 -35.67598 -34.56051 -34.18161 -32.85412 -30.89650 -29.89758 -28.02634 -26.67598 -25.85716 -24.70900 -22.62818 -21.74978 -20.91159 -20.43673 -19.20667 -17.76806 -17.20040 -17.00632 -16.72547 -16.40860 -16.06308 -15.67432 -15.46417 -14.70162 -14.47678 -14.31460 -13.96625 -13.71556 -13.36895 -13.07974 -13.00199 -12.70572 -12.55102 -12.48795 -12.24339 -11.95550 -11.66304 -11.39745 -11.29464 -10.96711 -10.78864 -10.73356 -10.33480 -10.24717 -10.00068 -9.79877 -9.67432 -9.61049 -9.39363 -8.78839 -8.57640 -6.80207 -5.65383 -2.93295 1.76217 2.46612 2.59637 3.50973 3.55120 3.56739 3.57527 3.97074 4.25830 4.51857 4.61642 4.62288 4.68536 4.72036 4.76046 4.82773 4.91827 4.98074 5.10917 5.24917 5.28791 5.33861 5.42744 5.47202 5.49931 5.61354 5.67528 5.84318 5.96303 6.00664 6.11244 6.20947 6.24852 6.37971 6.44816 6.70459 6.73414 6.82456 7.15611 7.78514 8.02414 8.07246 8.53105 9.64521 10.23263 10.59443 11.57679 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.019198 B = 0.003066 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.172973 B = 9130.858522 C = 9933.373934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.086 3.914 4 O -0.358 6.358 5 C 0.046 3.954 6 C 0.506 3.494 7 O -0.508 6.508 8 N -0.609 5.609 9 C 0.104 3.896 10 C -0.167 4.167 11 C 0.073 3.927 12 O -0.367 6.367 13 C 0.088 3.912 14 H 0.052 0.948 15 C 0.166 3.834 16 N -0.725 5.725 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.933 5.933 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.082 3.918 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.027 0.973 40 H 0.035 0.965 41 H 0.387 0.613 42 H 0.254 0.746 43 H 0.094 0.906 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.051 10.372 -6.402 26.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.167 4.167 3 C 0.010 3.990 4 O -0.277 6.277 5 C -0.034 4.034 6 C 0.293 3.707 7 O -0.381 6.381 8 N -0.345 5.345 9 C -0.018 4.018 10 C -0.205 4.205 11 C -0.004 4.004 12 O -0.285 6.285 13 C 0.028 3.972 14 H 0.070 0.930 15 C 0.038 3.962 16 N -0.370 5.370 17 C -0.367 4.367 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.582 5.582 21 Si 0.739 3.261 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.041 4.041 26 H 0.123 0.877 27 H 0.115 0.885 28 H 0.137 0.863 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.221 0.779 42 H 0.064 0.936 43 H 0.113 0.887 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.692 9.682 -5.769 26.237 hybrid contribution 0.424 -0.060 -0.144 0.452 sum -23.268 9.623 -5.913 25.865 Atomic orbital electron populations 1.23831 0.95468 1.02296 1.00199 1.22735 0.95625 0.98267 1.00041 1.21623 0.88716 0.96249 0.92397 1.88071 1.44292 1.34897 1.60402 1.22284 0.93206 0.89178 0.98747 1.20290 0.82547 0.83962 0.83945 1.90769 1.72047 1.26134 1.49200 1.47886 1.31336 1.14452 1.40831 1.22028 0.98389 0.85581 0.95828 1.22521 0.95196 0.99745 1.03071 1.22115 0.94632 0.94647 0.88994 1.86447 1.45347 1.57929 1.38730 1.22265 0.92602 0.89932 0.92385 0.93045 1.20618 0.87254 0.96131 0.92204 1.42209 1.13309 1.74964 1.06483 1.19239 0.93602 1.33364 0.90510 0.91185 1.24739 0.98413 1.02351 0.95659 1.69683 1.29029 1.52026 1.07439 0.86175 0.82308 0.78525 0.79105 1.21794 1.21849 1.20797 1.22423 0.87682 1.02740 0.91243 0.87668 0.88470 0.86268 0.92616 0.92036 0.90345 0.90246 0.91203 0.90285 0.89759 0.89617 0.89197 0.93631 0.95565 0.94745 0.77872 0.93646 0.88747 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 14.31 29.01 0.42 -0.81 16 2 C -0.15 -1.27 9.89 -36.02 -0.36 -1.63 16 3 C 0.09 0.73 6.35 36.01 0.23 0.95 16 4 O -0.36 -4.45 9.86 -55.14 -0.54 -4.99 16 5 C 0.05 0.45 4.76 36.01 0.17 0.62 16 6 C 0.51 7.10 7.71 -10.98 -0.08 7.01 16 7 O -0.51 -9.67 15.93 -14.35 -0.23 -9.90 16 8 N -0.61 -7.46 2.19 -172.53 -0.38 -7.84 16 9 C 0.10 0.84 6.00 -3.19 -0.02 0.82 16 10 C -0.17 -1.51 5.78 -27.17 -0.16 -1.66 16 11 C 0.07 0.95 6.37 36.41 0.23 1.18 16 12 O -0.37 -6.58 9.18 -26.53 -0.24 -6.83 16 13 C 0.09 1.61 2.73 -25.83 -0.07 1.54 16 14 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 15 C 0.17 3.62 5.95 -4.04 -0.02 3.60 16 16 N -0.73 -19.80 5.49 -59.90 -0.33 -20.12 16 17 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 18 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 19 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 20 N -0.93 -29.49 13.06 55.49 0.72 -28.76 16 21 Si 0.91 23.26 29.55 -169.99 -5.02 18.23 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 C 0.08 1.20 4.86 -3.88 -0.02 1.18 16 26 H 0.11 0.60 8.06 -52.49 -0.42 0.18 16 27 H 0.10 0.53 7.90 -52.49 -0.41 0.11 16 28 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.06 0.36 7.86 -51.92 -0.41 -0.05 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.54 8.04 -51.93 -0.42 0.12 16 32 H 0.08 0.60 7.41 -51.93 -0.38 0.21 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.44 5.88 -51.93 -0.31 0.14 16 35 H 0.08 0.85 8.01 -51.93 -0.42 0.44 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.59 7.40 -51.93 -0.38 0.21 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.39 11.24 7.53 -40.82 -0.31 10.94 16 42 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 43 H 0.09 1.48 7.27 -51.93 -0.38 1.10 16 44 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 LS Contribution 361.45 15.07 5.45 5.45 Total: -1.00 -37.03 361.45 -7.69 -44.72 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.19 Total: 4.91 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 0.07 Total: 5.13 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.02 Total: -56.73 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -1.02 Total: -21.71 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.03 -7.69 -44.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200108466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.552 kcal (2) G-P(sol) polarization free energy of solvation -37.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds