Wall clock time and date at job start Tue Mar 31 2020 05:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.91625 * 2 1 4 4 C 1.55124 * 111.16475 * 236.07058 * 2 1 3 5 5 N 1.47425 * 104.94236 * 205.12998 * 4 2 1 6 6 C 1.36935 * 125.64881 * 203.96597 * 5 4 2 7 7 H 1.08001 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00267 * 180.02562 * 6 5 4 9 9 N 1.31621 * 119.99657 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00098 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47101 * 60.00492 * 10 8 6 12 12 H 1.48498 * 109.47264 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47320 * 300.00335 * 10 8 6 14 14 C 1.47021 * 108.70596 * 24.00671 * 5 4 2 15 15 C 1.54329 * 107.27064 * 358.93809 * 14 5 4 16 16 H 1.08998 * 110.72229 * 96.34579 * 15 14 5 17 17 N 1.46496 * 110.71930 * 219.44907 * 15 14 5 18 18 C 1.34780 * 119.99578 * 271.15151 * 17 15 14 19 19 O 1.21274 * 120.00170 * 0.02562 * 18 17 15 20 20 C 1.50706 * 119.99931 * 180.02562 * 18 17 15 21 21 O 1.42891 * 109.47349 * 180.02562 * 20 18 17 22 22 C 1.42898 * 114.00283 * 179.97438 * 21 20 18 23 23 H 1.09002 * 110.43427 * 330.70123 * 22 21 20 24 24 C 1.54814 * 110.48996 * 208.15300 * 22 21 20 25 25 C 1.55340 * 101.93277 * 220.33909 * 24 22 21 26 26 O 1.44374 * 103.50460 * 37.05400 * 25 24 22 27 27 C 1.43744 * 106.97492 * 319.90756 * 26 25 24 28 28 H 1.09000 * 109.47220 * 296.09377 * 1 2 3 29 29 H 1.08996 * 109.46987 * 56.10101 * 1 2 3 30 30 H 1.09008 * 109.46907 * 176.10196 * 1 2 3 31 31 H 1.08998 * 110.41598 * 86.20432 * 4 2 1 32 32 H 1.08997 * 110.29646 * 323.99963 * 4 2 1 33 33 H 0.97005 * 119.99274 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.88291 * 239.52455 * 14 5 4 35 35 H 1.09001 * 109.88473 * 118.35389 * 14 5 4 36 36 H 0.97003 * 120.00438 * 91.15870 * 17 15 14 37 37 H 1.08998 * 109.46888 * 59.99609 * 20 18 17 38 38 H 1.08999 * 109.46878 * 300.00538 * 20 18 17 39 39 H 1.08997 * 110.90796 * 338.51333 * 24 22 21 40 40 H 1.09006 * 110.90124 * 102.11238 * 24 22 21 41 41 H 1.09002 * 110.63860 * 278.53681 * 25 24 22 42 42 H 1.08997 * 110.72113 * 155.61447 * 25 24 22 43 43 H 1.09000 * 109.87847 * 267.08529 * 27 26 25 44 44 H 1.09001 * 110.00611 * 146.00524 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0901 -0.8075 -1.2003 5 7 3.4299 -1.2473 -0.7705 6 6 4.4676 -1.5741 -1.6021 7 1 4.3392 -1.5192 -2.6730 8 6 5.6845 -1.9759 -1.0687 9 7 5.8408 -2.0433 0.2364 10 14 7.0997 -2.4223 -2.2032 11 1 7.4471 -1.2501 -3.0461 12 1 8.2794 -2.8160 -1.3917 13 1 6.6977 -3.5562 -3.0737 14 6 3.4672 -1.2781 0.6990 15 6 2.0861 -0.8079 1.2023 16 1 1.4451 -1.6614 1.4230 17 7 2.2287 0.0496 2.3815 18 6 2.2498 -0.4968 3.6134 19 8 2.1513 -1.6983 3.7456 20 6 2.3958 0.3853 4.8265 21 8 2.3915 -0.4218 6.0057 22 6 2.5259 0.3211 7.2190 23 1 3.0990 1.2320 7.0461 24 6 3.1997 -0.5438 8.3121 25 6 2.3837 -0.1569 9.5761 26 8 1.0389 -0.0011 9.0745 27 6 1.1396 0.6584 7.8013 28 1 -0.3634 0.4520 0.9229 29 1 -0.3633 0.5731 -0.8530 30 1 -0.3633 -1.0254 -0.0699 31 1 2.1643 -0.1733 -2.0837 32 1 1.4553 -1.6695 -1.4052 33 1 6.6911 -2.3245 0.6091 34 1 4.2435 -0.6056 1.0642 35 1 3.6613 -2.2937 1.0437 36 1 2.3077 1.0106 2.2757 37 1 1.5653 1.0902 4.8652 38 1 3.3355 0.9342 4.7656 39 1 3.0930 -1.6053 8.0889 40 1 4.2499 -0.2756 8.4277 41 1 2.7477 0.7807 9.9962 42 1 2.4261 -0.9518 10.3206 43 1 1.0454 1.7362 7.9337 44 1 0.3587 0.2978 7.1318 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206962638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:17 Heat of formation + Delta-G solvation = -96.504628 kcal Electronic energy + Delta-G solvation = -24599.918441 eV Core-core repulsion = 20939.384284 eV Total energy + Delta-G solvation = -3660.534156 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.03274 -39.38093 -37.72289 -36.76931 -33.89456 -32.63817 -31.67447 -30.37576 -29.33158 -28.51775 -26.77302 -25.58420 -23.57692 -22.99642 -21.57078 -20.81152 -20.01884 -19.59451 -17.55796 -17.21695 -16.86944 -16.39255 -16.14364 -15.73977 -15.43363 -15.08252 -14.84655 -14.10914 -13.85246 -13.61778 -13.21475 -13.09884 -12.80807 -12.77653 -12.53029 -12.42859 -12.08938 -11.82060 -11.70378 -11.69657 -11.34669 -11.03055 -11.00210 -10.76037 -10.60679 -10.41563 -10.19546 -9.98432 -9.94073 -9.70277 -9.68290 -9.42231 -8.61510 -8.48082 -6.82870 -5.68110 -3.03574 2.86542 2.94563 3.41601 3.45814 3.47598 3.62637 3.92288 4.21315 4.51077 4.55625 4.65612 4.83264 4.84727 4.99526 5.04744 5.09047 5.16638 5.23720 5.30707 5.39103 5.43000 5.43838 5.55496 5.59195 5.75408 5.78018 5.97983 5.98212 6.14116 6.19285 6.34897 6.48764 6.49990 6.62241 6.75565 6.87686 6.95997 7.57219 7.58977 7.84531 7.89715 8.26700 8.57740 9.22583 9.83330 10.48235 11.42405 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.003241 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.578727 B = 8637.527042 C = 9900.722605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.232 4.232 7 H 0.078 0.922 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.913 3.087 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.173 3.827 15 C 0.122 3.878 16 H 0.088 0.912 17 N -0.712 5.712 18 C 0.512 3.488 19 O -0.516 6.516 20 C 0.042 3.958 21 O -0.344 6.344 22 C 0.053 3.947 23 H 0.079 0.921 24 C -0.153 4.153 25 C 0.047 3.953 26 O -0.373 6.373 27 C 0.025 3.975 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.022 0.978 33 H 0.253 0.747 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.395 0.605 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.711 10.741 13.608 19.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.360 4.360 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.743 3.257 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.211 1.211 14 C 0.047 3.953 15 C 0.018 3.982 16 H 0.106 0.894 17 N -0.364 5.364 18 C 0.296 3.704 19 O -0.390 6.390 20 C -0.038 4.038 21 O -0.262 6.262 22 C -0.006 4.006 23 H 0.097 0.903 24 C -0.191 4.191 25 C -0.030 4.030 26 O -0.292 6.292 27 C -0.053 4.053 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.229 0.771 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.082 0.918 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.762 9.487 13.836 18.927 hybrid contribution 1.171 0.675 -0.748 1.545 sum -7.592 10.162 13.088 18.226 Atomic orbital electron populations 1.21695 0.95003 1.01850 1.00941 1.22648 0.94813 0.99479 0.96401 0.90462 1.21621 0.87667 0.95022 0.94271 1.44401 1.08006 1.79081 1.01798 1.19000 0.89381 1.38673 0.88921 0.90377 1.24834 0.97916 1.01665 0.96012 1.69969 1.24411 1.53073 1.09135 0.86193 0.81839 0.78263 0.79401 1.21212 1.21613 1.21140 1.21480 0.90016 1.00422 0.83341 1.22508 1.00357 0.92722 0.82661 0.89407 1.45801 1.74692 1.10482 1.05443 1.20033 0.77427 0.88980 0.83989 1.90748 1.47471 1.14846 1.85946 1.22334 1.02329 0.93516 0.85646 1.88145 1.94062 1.32035 1.11973 1.23605 0.95591 0.95374 0.86021 0.90305 1.23294 0.99990 1.02648 0.93168 1.23612 0.82111 1.01082 0.96158 1.88901 1.26385 1.79999 1.33944 1.23755 0.98473 0.96947 0.86100 0.93118 0.92772 0.92555 0.93980 0.96044 0.93680 0.93186 0.93390 0.77119 0.90560 0.90091 0.88661 0.89304 0.91998 0.88471 0.91841 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.32 37.16 0.35 -1.44 16 2 C -0.11 -1.86 3.27 -88.35 -0.29 -2.14 16 3 H 0.08 1.19 8.00 -51.93 -0.42 0.77 16 4 C 0.14 2.85 6.72 -2.41 -0.02 2.83 16 5 N -0.61 -15.58 3.40 -169.93 -0.58 -16.16 16 6 C -0.23 -6.50 10.28 -15.06 -0.15 -6.66 16 7 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -27.64 10.31 55.49 0.57 -27.07 16 10 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.17 4.32 5.13 -3.06 -0.02 4.30 16 15 C 0.12 2.32 2.74 -66.09 -0.18 2.14 16 16 H 0.09 1.81 7.52 -51.93 -0.39 1.42 16 17 N -0.71 -11.10 5.12 -52.03 -0.27 -11.36 16 18 C 0.51 8.63 7.91 -10.98 -0.09 8.54 16 19 O -0.52 -11.44 16.18 -14.35 -0.23 -11.67 16 20 C 0.04 0.50 6.27 36.01 0.23 0.73 16 21 O -0.34 -4.83 9.49 -55.14 -0.52 -5.35 16 22 C 0.05 0.53 3.51 -25.20 -0.09 0.44 16 23 H 0.08 0.59 7.84 -51.93 -0.41 0.19 16 24 C -0.15 -1.42 6.93 -24.53 -0.17 -1.59 16 25 C 0.05 0.39 7.73 38.40 0.30 0.68 16 26 O -0.37 -4.25 11.52 -35.23 -0.41 -4.66 16 27 C 0.02 0.24 7.52 37.73 0.28 0.52 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.76 8.08 -51.92 -0.42 0.34 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.02 0.44 7.99 -51.93 -0.41 0.02 16 33 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 34 H 0.05 1.36 7.27 -51.93 -0.38 0.98 16 35 H 0.05 1.41 7.50 -51.93 -0.39 1.02 16 36 H 0.40 4.73 8.54 -40.82 -0.35 4.39 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.98 7.97 -51.93 -0.41 0.57 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -35.84 357.86 -8.35 -44.20 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.35 Total: 1.31 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 0.06 Total: 8.04 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.27 Total: -54.59 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -1.16 Total: -21.68 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.84 -8.35 -44.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206962638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.308 kcal (2) G-P(sol) polarization free energy of solvation -35.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds