Wall clock time and date at job start Tue Mar 31 2020 03:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99826 * 2 1 4 4 C 1.52999 * 109.47266 * 120.00836 * 3 2 1 5 5 O 1.42893 * 109.47369 * 0.02562 * 3 2 1 6 6 C 1.53006 * 109.47152 * 240.00391 * 3 2 1 7 7 C 1.50698 * 109.47050 * 60.12391 * 6 3 2 8 8 O 1.21276 * 120.00140 * 354.31791 * 7 6 3 9 9 N 1.34783 * 119.99726 * 174.31423 * 7 6 3 10 10 C 1.46502 * 119.99635 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.64350 * 31.85747 * 10 9 7 12 12 C 1.54327 * 110.87038 * 268.61029 * 10 9 7 13 13 N 1.47026 * 107.26629 * 219.37503 * 12 10 9 14 14 C 1.36946 * 125.64364 * 179.20569 * 13 12 10 15 15 H 1.07994 * 119.99746 * 359.71200 * 14 13 12 16 16 C 1.38807 * 119.99505 * 179.71559 * 14 13 12 17 17 N 1.31611 * 120.00514 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99617 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47117 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47234 * 119.99812 * 18 16 14 21 21 H 1.48501 * 109.47114 * 239.99979 * 18 16 14 22 22 C 1.47417 * 108.70839 * 358.94041 * 13 12 10 23 23 C 1.54911 * 104.83144 * 24.12813 * 22 13 12 24 24 H 1.09006 * 111.00156 * 81.06332 * 23 22 13 25 25 O 1.42901 * 111.00655 * 204.91719 * 23 22 13 26 26 C 1.42896 * 113.99964 * 268.54513 * 25 23 22 27 27 H 1.07998 * 119.99904 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.99798 * 180.02562 * 1 2 3 29 29 H 1.07998 * 119.99904 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47496 * 184.93533 * 4 3 2 31 31 H 1.09007 * 109.46296 * 304.93173 * 4 3 2 32 32 H 1.08994 * 109.47205 * 64.92714 * 4 3 2 33 33 H 0.96703 * 114.00309 * 299.99744 * 5 3 2 34 34 H 1.09003 * 109.47053 * 300.12978 * 6 3 2 35 35 H 1.09003 * 109.47319 * 180.12853 * 6 3 2 36 36 H 0.97003 * 120.00027 * 359.97438 * 9 7 6 37 37 H 1.08996 * 109.88010 * 99.96001 * 12 10 9 38 38 H 1.08999 * 109.88315 * 338.78943 * 12 10 9 39 39 H 0.97004 * 120.00259 * 180.02562 * 17 16 14 40 40 H 1.08997 * 110.36929 * 142.96342 * 22 13 12 41 41 H 1.08998 * 110.36675 * 265.18400 * 22 13 12 42 42 H 1.09002 * 109.47089 * 60.00204 * 26 25 23 43 43 H 1.09004 * 109.47325 * 179.97438 * 26 25 23 44 44 H 1.08998 * 109.47206 * 299.99983 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9433 1.3861 1.2491 5 8 1.1349 2.3912 0.0006 6 6 2.9431 1.3862 -1.2493 7 6 2.0763 1.3095 -2.4797 8 8 0.8871 1.0974 -2.3715 9 7 2.6227 1.4766 -3.7004 10 6 1.7800 1.4025 -4.8965 11 1 0.7744 1.7634 -4.6810 12 6 1.7364 -0.0374 -5.4500 13 7 1.7765 0.0575 -6.9167 14 6 1.7713 -1.0012 -7.7853 15 1 1.7401 -2.0115 -7.4051 16 6 1.8063 -0.7756 -9.1545 17 7 1.8439 0.4557 -9.6179 18 14 1.7985 -2.2197 -10.3395 19 1 1.7529 -3.4899 -9.5715 20 1 0.6066 -2.1305 -11.2207 21 1 3.0304 -2.1867 -11.1681 22 6 1.8167 1.4811 -7.2975 23 6 2.4126 2.2048 -6.0643 24 1 3.4995 2.1230 -6.0507 25 8 2.0034 3.5734 -6.0262 26 6 2.9028 4.4674 -6.6848 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 3.4207 2.3649 1.2945 31 1 2.3278 1.2406 2.1369 32 1 3.7078 0.6105 1.2059 33 1 0.5433 2.4034 -0.7642 34 1 3.6499 0.5564 -1.2506 35 1 3.4898 2.3292 -1.2482 36 1 3.5738 1.6466 -3.7869 37 1 0.8153 -0.5277 -5.1353 38 1 2.5991 -0.5988 -5.0912 39 1 1.8680 0.6133 -10.5748 40 1 2.4581 1.6232 -8.1672 41 1 0.8111 1.8469 -7.5047 42 1 2.9902 4.1869 -7.7345 43 1 2.5212 5.4859 -6.6119 44 1 3.8828 4.4115 -6.2110 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212178264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:59 Heat of formation + Delta-G solvation = -101.500187 kcal Electronic energy + Delta-G solvation = -25313.141308 eV Core-core repulsion = 21652.390528 eV Total energy + Delta-G solvation = -3660.750780 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.39592 -40.03690 -38.50714 -37.48076 -35.56065 -33.95100 -33.68191 -32.16199 -30.66169 -29.48671 -28.26605 -27.53051 -25.98003 -23.50277 -22.46331 -22.03852 -21.35343 -20.47417 -19.17611 -18.27156 -17.87850 -17.79520 -17.16856 -16.80701 -16.41101 -16.08736 -15.80605 -15.61589 -15.21737 -15.11939 -14.75607 -14.49221 -13.95640 -13.79884 -13.61696 -13.31262 -13.19547 -13.05225 -12.97885 -12.81060 -12.75983 -12.63473 -12.53837 -12.34484 -12.02129 -11.92468 -11.90883 -11.54900 -11.11005 -10.95867 -10.82021 -10.59092 -10.07701 -9.97142 -8.98489 -7.82476 -5.29692 1.46506 1.47858 1.50238 1.58138 1.66538 2.09597 2.44235 2.74098 3.28886 3.34806 3.58408 3.65825 3.80835 3.88222 3.94307 3.98089 4.08473 4.35427 4.40004 4.46298 4.51429 4.60331 4.63072 4.65873 4.73549 4.83988 4.87916 4.89614 4.96527 4.99735 5.16378 5.28258 5.33396 5.43522 5.47357 5.66976 5.75346 5.96531 6.17505 6.30008 6.56012 6.70413 7.03171 7.28655 7.68104 8.30255 9.19181 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.019234 B = 0.003829 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.439445 B = 7310.118482 C = 8316.717728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.189 4.189 3 C 0.168 3.832 4 C -0.130 4.130 5 O -0.576 6.576 6 C -0.157 4.157 7 C 0.509 3.491 8 O -0.569 6.569 9 N -0.704 5.704 10 C 0.156 3.844 11 H 0.079 0.921 12 C 0.133 3.867 13 N -0.620 5.620 14 C -0.243 4.243 15 H 0.083 0.917 16 C -0.061 4.061 17 N -0.947 5.947 18 Si 0.983 3.017 19 H -0.267 1.267 20 H -0.294 1.294 21 H -0.286 1.286 22 C 0.145 3.855 23 C 0.076 3.924 24 H 0.089 0.911 25 O -0.396 6.396 26 C 0.028 3.972 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.381 0.619 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.415 0.585 37 H 0.014 0.986 38 H 0.043 0.957 39 H 0.250 0.750 40 H 0.085 0.915 41 H -0.014 1.014 42 H 0.033 0.967 43 H 0.103 0.897 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.007 4.561 17.757 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.207 4.207 3 C 0.127 3.873 4 C -0.187 4.187 5 O -0.386 6.386 6 C -0.196 4.196 7 C 0.298 3.702 8 O -0.449 6.449 9 N -0.355 5.355 10 C 0.050 3.950 11 H 0.098 0.902 12 C 0.006 3.994 13 N -0.347 5.347 14 C -0.372 4.372 15 H 0.101 0.899 16 C -0.254 4.254 17 N -0.596 5.596 18 Si 0.811 3.189 19 H -0.192 1.192 20 H -0.221 1.221 21 H -0.213 1.213 22 C 0.019 3.981 23 C 0.017 3.983 24 H 0.106 0.894 25 O -0.314 6.314 26 C -0.068 4.068 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.140 0.860 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.232 0.768 34 H 0.151 0.849 35 H 0.142 0.858 36 H 0.252 0.748 37 H 0.032 0.968 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.103 0.897 41 H 0.004 0.996 42 H 0.052 0.948 43 H 0.121 0.879 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.309 4.576 18.289 20.220 hybrid contribution -0.321 -0.859 -1.960 2.164 sum 6.988 3.718 16.329 18.146 Atomic orbital electron populations 1.23646 0.96718 1.01347 0.99040 1.23493 0.96698 0.98865 1.01630 1.20114 0.88120 0.84281 0.94795 1.21731 0.98664 1.03911 0.94425 1.86407 1.51428 1.49769 1.51000 1.22480 0.99228 1.07651 0.90261 1.21336 0.88920 0.74723 0.85236 1.90675 1.17671 1.49665 1.86863 1.45836 1.12434 1.72602 1.04658 1.21542 0.95434 0.93882 0.84175 0.90243 1.21670 0.98381 0.95088 0.84228 1.44572 1.86990 1.02514 1.00643 1.19492 1.43216 0.86917 0.87560 0.89938 1.25644 1.02124 0.99402 0.98238 1.70005 1.58096 1.19304 1.12241 0.84944 0.76869 0.78554 0.78523 1.19175 1.22082 1.21256 1.22066 0.97419 0.82615 0.96010 1.23618 0.98351 0.81574 0.94798 0.89358 1.87836 1.50135 1.16306 1.77138 1.22959 0.93789 0.93861 0.96224 0.89318 0.88630 0.85966 0.90923 0.92259 0.88501 0.76757 0.84869 0.85810 0.74843 0.96766 0.93934 0.94064 0.89696 0.99600 0.94835 0.87887 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.30 12.60 67.78 0.85 -3.44 16 2 C -0.19 -4.16 7.47 25.64 0.19 -3.97 16 3 C 0.17 3.29 1.08 -11.54 -0.01 3.28 16 4 C -0.13 -1.80 8.82 71.98 0.64 -1.17 16 5 O -0.58 -14.56 11.92 -133.21 -1.59 -16.15 16 6 C -0.16 -2.56 4.97 29.85 0.15 -2.41 16 7 C 0.51 13.02 7.31 87.66 0.64 13.67 16 8 O -0.57 -18.80 11.60 12.76 0.15 -18.65 16 9 N -0.70 -18.24 5.11 -436.91 -2.23 -20.48 16 10 C 0.16 5.64 3.05 46.18 0.14 5.78 16 11 H 0.08 3.29 7.55 -2.39 -0.02 3.27 16 12 C 0.13 5.69 7.00 86.73 0.61 6.29 16 13 N -0.62 -32.14 3.39 -692.00 -2.35 -34.49 16 14 C -0.24 -13.61 10.27 84.03 0.86 -12.75 16 15 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 16 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 17 N -0.95 -55.51 10.09 21.65 0.22 -55.29 16 18 Si 0.98 45.03 29.55 68.60 2.03 47.06 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 21 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 22 C 0.15 7.20 5.61 86.86 0.49 7.69 16 23 C 0.08 2.83 3.11 31.99 0.10 2.93 16 24 H 0.09 2.89 7.77 -2.38 -0.02 2.87 16 25 O -0.40 -13.95 10.51 -148.98 -1.57 -15.52 16 26 C 0.03 0.73 10.89 113.37 1.23 1.97 16 27 H 0.09 2.40 6.41 -2.91 -0.02 2.38 16 28 H 0.10 2.25 8.06 -2.91 -0.02 2.22 16 29 H 0.12 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.38 10.49 5.79 -74.06 -0.43 10.06 16 34 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.41 7.95 8.56 -92.71 -0.79 7.15 16 37 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.04 1.71 8.03 -2.39 -0.02 1.69 16 39 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 40 H 0.09 4.66 5.89 -2.39 -0.01 4.65 16 41 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 42 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 44 H 0.06 1.31 8.11 -2.39 -0.02 1.29 16 Total: -1.00 -71.13 354.85 0.79 -70.34 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: -0.23 Total: 28.26 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 6.36 Total: 14.91 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -4.36 Total: -110.25 kcal Atomic # 8 Polarization: -47.31 SS G_CDS: -3.01 Total: -50.32 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -71.13 0.79 -70.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212178264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.157 kcal (2) G-P(sol) polarization free energy of solvation -71.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds