Wall clock time and date at job start Tue Mar 31 2020 05:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47082 * 2 1 4 4 O 1.42906 * 109.46745 * 119.99474 * 2 1 3 5 5 C 1.42903 * 113.99598 * 150.00062 * 4 2 1 6 6 C 1.50702 * 109.46815 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00020 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99755 * 179.97438 * 6 5 4 9 9 C 1.44955 * 117.33843 * 5.81137 * 8 6 5 10 10 C 1.51960 * 111.94136 * 203.77406 * 9 8 6 11 11 O 1.41329 * 111.60646 * 319.69846 * 10 9 8 12 12 C 1.40852 * 118.30577 * 56.89385 * 11 10 9 13 13 H 1.09001 * 109.54229 * 187.73961 * 12 11 10 14 14 C 1.53925 * 110.46244 * 68.19250 * 12 11 10 15 15 N 1.46775 * 107.61886 * 221.67550 * 14 12 11 16 16 C 1.36933 * 125.36326 * 178.66253 * 15 14 12 17 17 H 1.08000 * 120.00409 * 174.85395 * 16 15 14 18 18 C 1.38812 * 120.00002 * 354.86148 * 16 15 14 19 19 N 1.31622 * 119.99731 * 214.15879 * 18 16 15 20 20 Si 1.86799 * 120.00099 * 34.15509 * 18 16 15 21 21 H 1.48499 * 109.47415 * 174.07831 * 20 18 16 22 22 H 1.48500 * 109.47003 * 54.07925 * 20 18 16 23 23 H 1.48499 * 109.47399 * 294.08277 * 20 18 16 24 24 C 1.46872 * 109.27590 * 358.39646 * 15 14 12 25 25 C 1.44546 * 117.33645 * 185.82921 * 8 6 5 26 26 H 1.08998 * 109.64567 * 285.94316 * 25 8 6 27 27 H 1.08999 * 109.47904 * 300.00405 * 1 2 3 28 28 H 1.09005 * 109.46907 * 60.00500 * 1 2 3 29 29 H 1.09009 * 109.47294 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47169 * 239.99478 * 2 1 3 31 31 H 1.09002 * 109.46927 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46842 * 299.99540 * 3 2 1 33 33 H 1.09003 * 109.47071 * 59.99603 * 3 2 1 34 34 H 1.08998 * 109.47006 * 60.00452 * 5 4 2 35 35 H 1.08997 * 109.47406 * 299.99903 * 5 4 2 36 36 H 1.08997 * 108.98863 * 324.40787 * 9 8 6 37 37 H 1.09003 * 108.98877 * 83.22807 * 9 8 6 38 38 H 1.09001 * 109.05614 * 80.24254 * 10 9 8 39 39 H 1.08999 * 109.06067 * 199.22068 * 10 9 8 40 40 H 1.08997 * 109.95254 * 102.08060 * 14 12 11 41 41 H 1.09001 * 109.70294 * 341.12313 * 14 12 11 42 42 H 0.96990 * 120.00475 * 5.00162 * 19 18 16 43 43 H 1.08996 * 110.06886 * 137.29914 * 24 15 14 44 44 H 1.09006 * 110.06675 * 258.76566 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 3.2659 -1.3244 0.9888 6 6 3.6698 -1.9977 2.2752 7 8 2.9496 -1.9274 3.2484 8 7 4.8308 -2.6787 2.3437 9 6 5.7065 -2.6193 1.1901 10 6 6.6417 -3.8153 1.1249 11 8 7.1332 -4.1618 2.4038 12 6 6.2030 -4.4569 3.4195 13 1 6.7244 -4.5686 4.3702 14 6 5.4648 -5.7711 3.1078 15 7 4.0489 -5.5751 3.4409 16 6 3.0601 -6.5084 3.2789 17 1 2.0598 -6.3020 3.6300 18 6 3.3433 -7.7200 2.6635 19 7 2.4330 -8.3069 1.9157 20 14 5.0165 -8.5173 2.8965 21 1 5.0181 -9.8594 2.2609 22 1 5.3007 -8.6564 4.3474 23 1 6.0607 -7.6700 2.2666 24 6 3.8607 -4.2225 3.9813 25 6 5.1011 -3.4090 3.5614 26 1 5.3678 -2.7116 4.3555 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9563 0.8900 34 1 4.0199 -0.5873 0.7127 35 1 3.1809 -2.0707 0.1989 36 1 5.0996 -2.5940 0.2851 37 1 6.3018 -1.7077 1.2432 38 1 6.1027 -4.6662 0.7084 39 1 7.4828 -3.5744 0.4748 40 1 5.8774 -6.5811 3.7093 41 1 5.5661 -6.0072 2.0485 42 1 1.5915 -7.8596 1.7353 43 1 2.9599 -3.7742 3.5621 44 1 3.7879 -4.2608 5.0683 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217415005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:12 Heat of formation + Delta-G solvation = -64.796023 kcal Electronic energy + Delta-G solvation = -26177.414894 eV Core-core repulsion = 22518.255726 eV Total energy + Delta-G solvation = -3659.159168 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.98026 -38.98812 -37.87273 -36.20493 -34.97707 -32.99319 -32.50139 -30.48768 -28.97912 -28.16383 -27.47699 -26.82798 -24.21111 -23.47873 -21.51795 -21.06420 -20.32774 -18.84193 -17.65298 -17.33375 -17.09099 -16.82760 -16.20940 -15.70804 -15.37689 -15.05204 -14.69877 -14.59093 -14.13574 -13.90110 -13.58512 -13.21400 -13.06675 -12.88421 -12.83099 -12.40832 -12.21407 -12.16377 -12.08893 -11.75239 -11.61528 -11.34769 -11.17837 -10.99614 -10.87744 -10.61642 -10.24214 -9.89964 -9.78229 -9.63194 -9.21933 -8.99754 -8.37584 -8.29741 -7.07112 -6.36680 -3.11016 2.62808 2.75172 3.43640 3.55279 3.63570 3.72114 3.85303 4.43817 4.64181 4.66773 4.71712 4.79374 4.86270 4.90775 4.96383 4.98655 5.01181 5.11210 5.17956 5.23789 5.37295 5.43532 5.44018 5.51368 5.58321 5.61274 5.65995 5.68390 5.79045 5.95727 5.96637 6.05421 6.27859 6.47742 6.62181 6.68926 6.97274 7.01149 7.34892 7.49899 7.77138 8.29795 8.36328 9.04665 9.61762 10.26735 11.11177 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.016944 B = 0.005070 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.107776 B = 5521.334030 C = 6363.997305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 C -0.175 4.175 4 O -0.356 6.356 5 C 0.047 3.953 6 C 0.512 3.488 7 O -0.504 6.504 8 N -0.589 5.589 9 C 0.076 3.924 10 C 0.055 3.945 11 O -0.367 6.367 12 C 0.086 3.914 13 H 0.120 0.880 14 C 0.092 3.908 15 N -0.604 5.604 16 C -0.336 4.336 17 H 0.081 0.919 18 C -0.010 4.010 19 N -0.904 5.904 20 Si 1.030 2.970 21 H -0.298 1.298 22 H -0.296 1.296 23 H -0.278 1.278 24 C 0.119 3.881 25 C 0.114 3.886 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.034 0.966 41 H 0.049 0.951 42 H 0.264 0.736 43 H 0.080 0.920 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.481 17.885 -6.574 20.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 C -0.232 4.232 4 O -0.274 6.274 5 C -0.033 4.033 6 C 0.299 3.701 7 O -0.378 6.378 8 N -0.325 5.325 9 C -0.047 4.047 10 C -0.022 4.022 11 O -0.284 6.284 12 C 0.027 3.973 13 H 0.137 0.863 14 C -0.033 4.033 15 N -0.333 5.333 16 C -0.463 4.463 17 H 0.098 0.902 18 C -0.212 4.212 19 N -0.543 5.543 20 Si 0.862 3.138 21 H -0.225 1.225 22 H -0.224 1.224 23 H -0.205 1.205 24 C -0.007 4.007 25 C 0.010 3.990 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.999 16.482 -6.195 18.948 hybrid contribution -0.905 1.250 0.114 1.547 sum 6.094 17.732 -6.081 19.711 Atomic orbital electron populations 1.21853 0.93271 1.03162 1.02436 1.22164 0.95456 0.92319 0.88016 1.22312 1.01381 0.96853 1.02689 1.88081 1.34708 1.69605 1.35022 1.22306 0.87941 0.96820 0.96260 1.20182 0.80913 0.79307 0.89743 1.90682 1.51360 1.58453 1.37289 1.46566 1.19737 1.49749 1.16435 1.21675 0.93959 1.00230 0.88869 1.22296 0.98169 0.95875 0.85862 1.86901 1.34111 1.88055 1.19376 1.22600 0.89712 0.93490 0.91506 0.86288 1.22422 0.86445 0.94770 0.99663 1.44662 1.02674 1.10702 1.75270 1.19954 0.89748 0.97984 1.38565 0.90168 1.25565 1.04873 0.95771 0.94983 1.70911 1.09160 1.43857 1.30369 0.84505 0.76970 0.75964 0.76388 1.22530 1.22400 1.20483 1.21908 0.96771 0.85053 0.96926 1.21637 0.97987 0.93684 0.85712 0.90282 0.91628 0.91243 0.91653 0.92080 0.92601 0.91589 0.91606 0.90695 0.90187 0.89951 0.91359 0.92116 0.87396 0.94900 0.93297 0.92588 0.90210 0.95142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.56 37.16 0.36 -1.12 16 2 C 0.08 0.82 3.34 -26.73 -0.09 0.73 16 3 C -0.17 -1.49 9.53 37.16 0.35 -1.13 16 4 O -0.36 -5.25 9.52 -55.14 -0.52 -5.78 16 5 C 0.05 0.61 4.63 36.01 0.17 0.78 16 6 C 0.51 8.81 7.01 -10.98 -0.08 8.74 16 7 O -0.50 -10.70 13.82 -14.35 -0.20 -10.90 16 8 N -0.59 -9.50 3.09 -168.83 -0.52 -10.02 16 9 C 0.08 0.91 5.91 -5.40 -0.03 0.88 16 10 C 0.06 0.72 6.72 36.63 0.25 0.96 16 11 O -0.37 -5.83 10.25 -34.45 -0.35 -6.19 16 12 C 0.09 1.51 3.82 -26.39 -0.10 1.41 16 13 H 0.12 1.85 8.14 -51.93 -0.42 1.43 16 14 C 0.09 2.06 4.22 -3.41 -0.01 2.05 16 15 N -0.60 -15.40 3.37 -171.43 -0.58 -15.98 16 16 C -0.34 -9.93 10.37 -15.06 -0.16 -10.08 16 17 H 0.08 2.54 8.06 -52.49 -0.42 2.11 16 18 C -0.01 -0.30 5.42 -17.43 -0.09 -0.39 16 19 N -0.90 -28.46 13.70 55.49 0.76 -27.70 16 20 Si 1.03 26.28 25.10 -169.99 -4.27 22.02 16 21 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 22 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.28 -6.48 5.05 56.52 0.29 -6.19 16 24 C 0.12 2.68 6.29 -3.23 -0.02 2.65 16 25 C 0.11 2.06 3.34 -68.51 -0.23 1.83 16 26 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.06 0.55 7.79 -51.93 -0.40 0.15 16 31 H 0.05 0.44 7.87 -51.93 -0.41 0.04 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.73 7.67 -51.93 -0.40 0.33 16 35 H 0.08 0.95 7.37 -51.93 -0.38 0.56 16 36 H 0.08 0.81 6.26 -51.93 -0.33 0.48 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.92 6.84 -51.93 -0.35 0.56 16 39 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.03 0.77 4.91 -51.93 -0.25 0.51 16 41 H 0.05 1.16 5.01 -51.93 -0.26 0.90 16 42 H 0.26 8.28 8.73 -40.82 -0.36 7.92 16 43 H 0.08 1.98 5.11 -51.93 -0.27 1.71 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -35.95 335.31 -7.29 -43.24 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.97 Total: -1.06 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 0.31 Total: 7.30 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.34 Total: -53.70 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -1.08 Total: -22.86 kcal Atomic # 14 Polarization: 26.28 SS G_CDS: -4.27 Total: 22.02 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.95 -7.29 -43.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217415005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.557 kcal (2) G-P(sol) polarization free energy of solvation -35.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds