Wall clock time and date at job start Tue Mar 31 2020 03:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 6 6 H 1.07995 * 120.00006 * 240.00415 * 5 3 2 7 7 C 1.37875 * 120.00190 * 59.99565 * 5 3 2 8 8 N 1.31520 * 119.99966 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00189 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47255 * 90.00191 * 9 7 5 11 11 H 1.48503 * 109.46900 * 210.00227 * 9 7 5 12 12 H 1.48494 * 109.46968 * 329.99883 * 9 7 5 13 13 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 14 14 C 1.34777 * 119.99828 * 274.72131 * 13 3 2 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 3 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 3 17 17 H 1.08998 * 109.46954 * 300.00581 * 16 14 13 18 18 C 1.53001 * 109.46771 * 60.00208 * 16 14 13 19 19 C 1.52990 * 109.47398 * 180.02562 * 16 14 13 20 20 H 1.09000 * 112.92415 * 309.67338 * 19 16 14 21 21 N 1.47395 * 113.70740 * 81.15248 * 19 16 14 22 22 C 1.36123 * 95.11802 * 114.39233 * 21 19 16 23 23 O 1.21280 * 134.15921 * 180.02562 * 22 21 19 24 24 C 1.51516 * 91.65921 * 0.05830 * 22 21 19 25 25 H 1.08995 * 113.68947 * 245.51200 * 24 22 21 26 26 C 1.52999 * 113.68782 * 114.37003 * 24 22 21 27 27 H 1.09001 * 109.47602 * 322.99861 * 26 24 22 28 28 C 1.53005 * 109.46941 * 82.99504 * 26 24 22 29 29 O 1.42901 * 109.47172 * 202.99493 * 26 24 22 30 30 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 31 31 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 32 32 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 34 34 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 35 35 H 0.96995 * 120.00431 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00384 * 95.00578 * 13 3 2 37 37 H 1.08998 * 109.46818 * 180.02562 * 18 16 14 38 38 H 1.09008 * 109.47076 * 299.99851 * 18 16 14 39 39 H 1.08992 * 109.47503 * 60.00389 * 18 16 14 40 40 H 0.96995 * 132.38013 * 294.37847 * 21 19 16 41 41 H 1.08999 * 109.47196 * 59.99877 * 28 26 24 42 42 H 1.09006 * 109.47006 * 179.97438 * 28 26 24 43 43 H 1.08997 * 109.47247 * 299.99508 * 28 26 24 44 44 H 0.96700 * 113.99827 * 300.00075 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3373 -2.1733 9 14 6.0051 0.8799 -1.3811 10 1 6.5540 -0.3521 -0.7597 11 1 6.3836 0.9212 -2.8165 12 1 6.5577 2.0718 -0.6889 13 7 1.6525 2.0974 1.2518 14 6 0.4374 2.6692 1.3650 15 8 -0.3373 2.6371 0.4323 16 6 0.0409 3.3485 2.6505 17 1 0.0694 2.6265 3.4667 18 6 1.0157 4.4903 2.9456 19 6 -1.3761 3.9091 2.5153 20 1 -1.5116 4.5079 1.6147 21 7 -2.4336 2.9035 2.7227 22 6 -2.9225 3.4738 3.8579 23 8 -3.8245 3.1989 4.6207 24 6 -1.8970 4.5873 3.7928 25 1 -1.1841 4.5749 4.6171 26 6 -2.5056 5.9700 3.5503 27 1 -3.3475 5.8811 2.8637 28 6 -2.9905 6.5538 4.8788 29 8 -1.5174 6.8325 2.9832 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.8293 -0.0606 -2.9502 36 1 2.2720 2.1232 1.9978 37 1 0.7292 4.9813 3.8756 38 1 2.0252 4.0905 3.0421 39 1 0.9873 5.2123 2.1295 40 1 -2.6904 2.1123 2.2238 41 1 -2.1487 6.6427 5.5655 42 1 -3.4237 7.5391 4.7061 43 1 -3.7443 5.8959 5.3113 44 1 -0.7378 6.9578 3.5414 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220898385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:37 Heat of formation + Delta-G solvation = -143.023079 kcal Electronic energy + Delta-G solvation = -25406.030268 eV Core-core repulsion = 21743.478920 eV Total energy + Delta-G solvation = -3662.551348 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.27172 -40.51552 -38.38832 -37.52697 -36.77124 -34.59201 -33.89980 -32.35032 -32.22064 -29.01209 -28.42126 -26.40611 -25.16118 -23.64601 -23.47646 -21.64381 -20.85296 -20.53185 -19.01373 -18.42234 -17.79232 -17.49103 -17.18297 -17.06092 -16.41083 -16.19518 -16.05905 -15.49870 -15.11101 -14.71134 -14.58462 -14.14243 -14.11724 -13.81592 -13.65304 -13.47867 -13.18331 -13.06994 -12.88509 -12.81287 -12.74598 -12.63455 -12.39577 -12.16323 -12.14738 -12.01091 -11.77694 -11.58912 -11.27750 -11.02754 -10.85441 -10.57545 -10.42458 -10.23668 -9.56640 -8.14510 -6.31471 1.34922 1.45705 1.46559 1.56485 1.92500 2.21062 2.38038 2.62921 2.78921 3.15314 3.38736 3.58141 3.73986 3.85446 4.01368 4.11421 4.28867 4.35182 4.37220 4.48647 4.56037 4.56673 4.75332 4.86900 4.93307 4.99301 5.07140 5.09205 5.17953 5.26615 5.28995 5.33181 5.43345 5.44844 5.57957 5.66937 5.80919 5.82680 5.95812 6.19378 6.77988 6.93129 7.05272 7.23163 7.36520 7.65383 8.90535 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.025159 B = 0.003637 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.665061 B = 7696.907264 C = 8392.883493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.122 4.122 3 C 0.280 3.720 4 H -0.002 1.002 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.262 1.262 13 N -0.703 5.703 14 C 0.501 3.499 15 O -0.586 6.586 16 C -0.106 4.106 17 H 0.116 0.884 18 C -0.139 4.139 19 C 0.169 3.831 20 H 0.096 0.904 21 N -0.738 5.738 22 C 0.530 3.470 23 O -0.547 6.547 24 C -0.156 4.156 25 H 0.157 0.843 26 C 0.132 3.868 27 H 0.083 0.917 28 C -0.180 4.180 29 O -0.562 6.562 30 H 0.046 0.954 31 H 0.025 0.975 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.038 0.962 35 H 0.263 0.737 36 H 0.403 0.597 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.401 0.599 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.035 10.965 15.656 19.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.016 0.984 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.792 3.208 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.186 1.186 13 N -0.352 5.352 14 C 0.288 3.712 15 O -0.467 6.467 16 C -0.128 4.128 17 H 0.134 0.866 18 C -0.196 4.196 19 C 0.065 3.935 20 H 0.114 0.886 21 N -0.395 5.395 22 C 0.316 3.684 23 O -0.424 6.424 24 C -0.178 4.178 25 H 0.175 0.825 26 C 0.072 3.928 27 H 0.101 0.899 28 C -0.238 4.238 29 O -0.369 6.369 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.237 0.763 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.241 0.759 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -6.468 10.712 14.724 19.323 hybrid contribution 1.190 -1.141 -0.455 1.710 sum -5.278 9.570 14.270 17.974 Atomic orbital electron populations 1.21655 0.97012 0.98889 1.00269 1.21791 0.93724 0.99519 1.01067 1.18295 0.93456 0.88926 0.81702 0.98420 1.21605 0.91598 1.38623 1.06524 0.90868 1.25757 1.03098 0.94528 0.95151 1.70051 1.36986 1.38539 1.09894 0.85416 0.79439 0.78881 0.77032 1.19926 1.21574 1.18612 1.46229 1.15887 1.55746 1.17319 1.21083 0.81683 0.78394 0.90078 1.90674 1.52266 1.61287 1.42489 1.21578 0.95584 1.00240 0.95384 0.86643 1.21803 0.97815 0.96109 1.03912 1.22138 0.86118 0.86502 0.98792 0.88581 1.49053 1.34315 1.28965 1.27190 1.22381 0.82772 0.84108 0.79165 1.90726 1.33465 1.72677 1.45482 1.24445 0.97721 0.96159 0.99483 0.82518 1.21404 0.90459 0.84960 0.96004 0.89864 1.22456 1.03131 1.01762 0.96436 1.86664 1.32985 1.67562 1.49733 0.93494 0.95604 0.94069 0.91333 0.94276 0.92761 0.76253 0.87608 0.90930 0.92135 0.75897 0.89595 0.91047 0.92206 0.75587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.52 71.98 0.61 -4.64 16 2 C -0.12 -5.83 5.45 30.60 0.17 -5.66 16 3 C 0.28 13.61 2.24 44.24 0.10 13.71 16 4 H 0.00 -0.12 7.57 -2.39 -0.02 -0.14 16 5 C -0.55 -27.60 8.73 25.60 0.22 -27.38 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.01 0.77 5.29 84.65 0.45 1.21 16 8 N -0.92 -51.54 11.29 21.45 0.24 -51.30 16 9 Si 0.97 40.92 29.54 68.60 2.03 42.95 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 13 N -0.70 -25.99 4.91 -446.09 -2.19 -28.18 16 14 C 0.50 16.99 5.73 87.66 0.50 17.49 16 15 O -0.59 -24.84 13.04 -3.04 -0.04 -24.88 16 16 C -0.11 -2.24 2.64 -11.54 -0.03 -2.27 16 17 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 18 C -0.14 -2.01 8.91 71.98 0.64 -1.37 16 19 C 0.17 3.64 2.81 44.96 0.13 3.76 16 20 H 0.10 2.50 7.75 -2.39 -0.02 2.48 16 21 N -0.74 -18.12 7.26 -452.24 -3.28 -21.41 16 22 C 0.53 12.78 9.31 87.60 0.82 13.59 16 23 O -0.55 -17.04 18.03 -3.03 -0.05 -17.09 16 24 C -0.16 -2.43 2.67 -11.02 -0.03 -2.46 16 25 H 0.16 1.37 7.13 -2.39 -0.02 1.35 16 26 C 0.13 1.95 3.30 30.60 0.10 2.05 16 27 H 0.08 1.56 8.06 -2.39 -0.02 1.54 16 28 C -0.18 -2.09 9.53 71.98 0.69 -1.41 16 29 O -0.56 -7.88 13.11 -148.98 -1.95 -9.83 16 30 H 0.05 1.91 5.66 -2.39 -0.01 1.90 16 31 H 0.02 1.21 7.85 -2.39 -0.02 1.19 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 3.72 5.95 -2.39 -0.01 3.71 16 34 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 36 H 0.40 12.38 7.96 -92.71 -0.74 11.64 16 37 H 0.11 0.64 6.95 -2.39 -0.02 0.63 16 38 H 0.07 1.06 7.56 -2.38 -0.02 1.04 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.40 10.56 8.96 -92.71 -0.83 9.73 16 41 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.39 2.08 9.05 -74.06 -0.67 1.41 16 Total: -1.00 -71.15 357.13 -2.09 -73.24 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: -1.20 Total: 29.85 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 4.36 Total: 6.64 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -5.23 Total: -100.89 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -2.05 Total: -51.80 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -71.15 -2.09 -73.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.778 kcal (2) G-P(sol) polarization free energy of solvation -71.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds