Wall clock time and date at job start Tue Mar 31 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47165 * 2 1 4 4 N 1.46493 * 109.47347 * 240.00150 * 2 1 3 5 5 C 1.34779 * 120.00093 * 85.00032 * 4 2 1 6 6 O 1.21584 * 120.00188 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99751 * 180.02562 * 5 4 2 8 8 C 1.47419 * 125.65139 * 0.02562 * 7 5 4 9 9 C 1.54905 * 104.92834 * 155.80015 * 8 7 5 10 10 C 1.55448 * 101.45165 * 37.00468 * 9 8 7 11 11 O 1.42895 * 110.85602 * 82.96352 * 10 9 8 12 12 C 1.50702 * 110.70612 * 206.14440 * 10 9 8 13 13 H 1.07996 * 120.00236 * 355.00461 * 12 10 9 14 14 C 1.37878 * 119.99692 * 174.99986 * 12 10 9 15 15 N 1.31518 * 120.00134 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00123 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47513 * 90.00318 * 16 14 12 18 18 H 1.48506 * 109.47263 * 210.00370 * 16 14 12 19 19 H 1.48498 * 109.47090 * 329.99934 * 16 14 12 20 20 C 1.47026 * 125.64285 * 180.02562 * 7 5 4 21 21 C 1.53000 * 109.47273 * 119.99766 * 2 1 3 22 22 H 1.09005 * 110.43576 * 60.70172 * 21 2 1 23 23 C 1.54807 * 110.48913 * 298.16004 * 21 2 1 24 24 C 1.55233 * 101.98818 * 220.51412 * 23 21 2 25 25 O 1.44383 * 103.56201 * 36.88144 * 24 23 21 26 26 C 1.43750 * 106.97500 * 320.01073 * 25 24 23 27 27 H 1.09000 * 109.46672 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47203 * 300.00134 * 1 2 3 29 29 H 1.08997 * 109.46862 * 59.99728 * 1 2 3 30 30 H 0.97003 * 120.00305 * 264.99656 * 4 2 1 31 31 H 1.09002 * 110.36926 * 274.69484 * 8 7 5 32 32 H 1.08995 * 110.36556 * 36.90768 * 8 7 5 33 33 H 1.09002 * 111.00852 * 155.13877 * 9 8 7 34 34 H 1.09004 * 111.00578 * 278.99532 * 9 8 7 35 35 H 0.96705 * 114.00065 * 184.90995 * 11 10 9 36 36 H 0.97000 * 120.00099 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.88266 * 300.48971 * 20 7 5 38 38 H 1.08997 * 109.88244 * 61.50329 * 20 7 5 39 39 H 1.08998 * 110.91241 * 338.63660 * 23 21 2 40 40 H 1.08998 * 110.91180 * 102.24308 * 23 21 2 41 41 H 1.08992 * 110.51788 * 278.38571 * 24 23 21 42 42 H 1.08997 * 110.77448 * 155.49835 * 24 23 21 43 43 H 1.09000 * 109.87596 * 267.08723 * 26 25 24 44 44 H 1.08994 * 109.87541 * 145.93727 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8575 1.1614 -2.4118 7 7 2.5960 -0.6537 -3.4576 8 6 2.9797 -2.0751 -3.5326 9 6 2.8118 -2.4556 -5.0248 10 6 3.2850 -1.1538 -5.7304 11 8 4.7096 -1.1220 -5.8372 12 6 2.6472 -1.0224 -7.0895 13 1 2.0288 -1.8193 -7.4752 14 6 2.8532 0.1154 -7.8405 15 7 3.6067 1.0858 -7.3710 16 14 2.0623 0.2787 -9.5248 17 1 0.7267 0.9127 -9.3852 18 1 2.9213 1.1208 -10.3957 19 1 1.9100 -1.0675 -10.1328 20 6 2.7839 -0.0440 -4.7823 21 6 2.0400 -0.7212 1.2493 22 1 1.6957 -1.7554 1.2590 23 6 1.5754 0.0166 2.5285 24 6 2.8389 -0.0681 3.4264 25 8 3.9291 0.0821 2.4918 26 6 3.5786 -0.6645 1.3145 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 2.2491 -1.6317 -1.1526 31 1 4.0165 -2.2050 -3.2223 32 1 2.3198 -2.6795 -2.9104 33 1 3.4506 -3.2989 -5.2873 34 1 1.7689 -2.6698 -5.2584 35 1 5.0583 -0.2971 -6.2021 36 1 3.7519 1.8861 -7.8995 37 1 1.8361 0.3534 -5.1453 38 1 3.5219 0.7557 -4.7210 39 1 1.3232 1.0541 2.3094 40 1 0.7327 -0.4980 2.9900 41 1 2.8901 -1.0368 3.9234 42 1 2.8474 0.7389 4.1590 43 1 3.9843 -1.6740 1.3813 44 1 3.9689 -0.1640 0.4284 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325977273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:35 Heat of formation + Delta-G solvation = -126.719949 kcal Electronic energy + Delta-G solvation = -25354.506273 eV Core-core repulsion = 21692.661882 eV Total energy + Delta-G solvation = -3661.844391 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.22180 -39.28521 -37.49339 -35.54381 -34.25721 -32.27871 -32.21388 -30.28631 -29.34753 -28.97258 -27.70773 -25.10561 -23.42331 -22.91268 -22.24695 -20.55063 -19.68993 -19.39692 -17.61064 -17.05698 -16.80268 -16.16571 -15.84379 -15.38005 -15.13501 -14.89116 -14.42492 -14.25008 -13.76216 -13.36915 -13.11112 -12.95675 -12.91058 -12.78930 -12.39588 -12.16704 -11.79122 -11.69141 -11.66373 -11.44015 -11.36463 -11.18765 -11.04399 -10.82477 -10.71720 -10.66370 -10.48832 -10.16826 -9.84579 -9.60033 -9.30407 -8.87604 -8.66988 -8.30920 -7.76217 -6.26919 -4.35599 3.06579 3.22582 3.29803 3.32380 3.72321 3.74057 4.18874 4.27691 4.37205 4.53651 4.62119 4.91669 4.97248 5.00678 5.11365 5.29614 5.32020 5.36798 5.44535 5.52395 5.56426 5.63785 5.68282 5.71387 5.76434 5.85486 5.96783 6.01270 6.13824 6.24219 6.50297 6.64360 6.71692 6.78928 6.89376 6.99401 7.26988 7.32655 7.64164 7.74356 8.04877 8.52873 8.68167 9.13079 9.30568 9.39237 10.80850 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.029539 B = 0.003368 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.673510 B = 8310.654105 C = 8552.042805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.171 3.829 3 H 0.090 0.910 4 N -0.749 5.749 5 C 0.716 3.284 6 O -0.595 6.595 7 N -0.630 5.630 8 C 0.103 3.897 9 C -0.116 4.116 10 C 0.248 3.752 11 O -0.585 6.585 12 C -0.538 4.538 13 H 0.066 0.934 14 C 0.070 3.930 15 N -0.893 5.893 16 Si 0.903 3.097 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.123 3.877 21 C -0.130 4.130 22 H 0.087 0.913 23 C -0.145 4.145 24 C 0.045 3.955 25 O -0.377 6.377 26 C 0.050 3.950 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.391 0.609 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.382 0.618 36 H 0.270 0.730 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.059 0.941 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.765 -5.965 17.858 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.065 3.935 3 H 0.108 0.892 4 N -0.406 5.406 5 C 0.418 3.582 6 O -0.474 6.474 7 N -0.367 5.367 8 C -0.020 4.020 9 C -0.154 4.154 10 C 0.208 3.792 11 O -0.394 6.394 12 C -0.576 4.576 13 H 0.084 0.916 14 C -0.133 4.133 15 N -0.532 5.532 16 Si 0.731 3.269 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C 0.001 3.999 21 C -0.149 4.149 22 H 0.106 0.894 23 C -0.183 4.183 24 C -0.032 4.032 25 O -0.296 6.296 26 C -0.027 4.027 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.225 0.775 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.233 0.767 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.077 0.923 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.783 -5.327 18.085 19.229 hybrid contribution -0.524 0.108 -1.171 1.287 sum -4.307 -5.219 16.914 18.218 Atomic orbital electron populations 1.22220 0.95459 1.01902 1.02603 1.20729 0.93776 0.97076 0.81890 0.89179 1.45234 1.72974 1.13402 1.08975 1.15511 0.78554 0.84573 0.79565 1.90887 1.57889 1.14364 1.84256 1.47978 1.67377 1.11155 1.10205 1.22220 0.98905 0.82089 0.98791 1.22766 1.01242 0.99199 0.92166 1.19555 0.79559 0.88251 0.91876 1.86097 1.22273 1.43970 1.87038 1.21489 1.31421 1.03366 1.01339 0.91590 1.25075 0.94407 0.95186 0.98621 1.69699 1.37790 1.07413 1.38256 0.86406 0.79205 0.78204 0.83113 1.20438 1.20992 1.19720 1.22851 1.01339 0.97614 0.78053 1.22861 0.96061 1.00787 0.95221 0.89437 1.23203 0.98542 1.02001 0.94560 1.23597 0.85385 1.01478 0.92716 1.88904 1.41679 1.72422 1.26622 1.23270 0.93626 0.96510 0.89255 0.92722 0.91906 0.91598 0.77491 0.92043 0.92731 0.90619 0.90550 0.76733 0.91997 0.91827 0.91905 0.89831 0.89867 0.92312 0.88969 0.92291 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.28 37.16 0.34 -1.50 16 2 C 0.17 2.10 1.82 -67.93 -0.12 1.97 16 3 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 4 N -0.75 -10.70 4.55 -58.68 -0.27 -10.96 16 5 C 0.72 14.22 8.45 -86.91 -0.73 13.48 16 6 O -0.60 -14.23 16.33 5.29 0.09 -14.15 16 7 N -0.63 -12.89 3.33 -176.25 -0.59 -13.47 16 8 C 0.10 1.76 6.56 -2.53 -0.02 1.74 16 9 C -0.12 -2.26 6.26 -24.43 -0.15 -2.41 16 10 C 0.25 5.95 0.85 -89.78 -0.08 5.88 16 11 O -0.58 -14.60 13.08 -35.23 -0.46 -15.06 16 12 C -0.54 -14.02 8.12 -34.44 -0.28 -14.30 16 13 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 14 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 15 N -0.89 -23.90 10.97 55.43 0.61 -23.29 16 16 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 C 0.12 3.01 5.24 -3.06 -0.02 2.99 16 21 C -0.13 -1.19 2.67 -89.09 -0.24 -1.43 16 22 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 23 C -0.14 -1.11 5.72 -24.60 -0.14 -1.25 16 24 C 0.04 0.37 7.72 38.34 0.30 0.67 16 25 O -0.38 -4.55 11.52 -35.23 -0.41 -4.95 16 26 C 0.05 0.54 7.17 37.73 0.27 0.81 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.57 7.18 -51.93 -0.37 0.20 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.39 4.62 7.08 -40.82 -0.29 4.34 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.73 7.29 -51.93 -0.38 0.36 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 35 H 0.38 9.81 7.45 45.56 0.34 10.15 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.06 1.71 7.81 -51.93 -0.41 1.30 16 38 H 0.06 1.68 7.93 -51.93 -0.41 1.27 16 39 H 0.08 0.68 7.65 -51.93 -0.40 0.29 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 1.16 7.47 -51.93 -0.39 0.77 16 LS Contribution 350.63 15.07 5.28 5.28 Total: -1.00 -30.82 350.63 -8.19 -39.01 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -6.46 Total: 13.70 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -0.96 Total: 8.41 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.25 Total: -47.73 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.78 Total: -34.16 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.82 -8.19 -39.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325977273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.714 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds