Wall clock time and date at job start Tue Mar 31 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47165 * 2 1 4 4 N 1.46493 * 109.47347 * 240.00150 * 2 1 3 5 5 C 1.34779 * 120.00093 * 85.00032 * 4 2 1 6 6 O 1.21584 * 120.00188 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99751 * 180.02562 * 5 4 2 8 8 C 1.47419 * 125.65139 * 0.02562 * 7 5 4 9 9 C 1.54905 * 104.92834 * 155.80015 * 8 7 5 10 10 C 1.55448 * 101.45165 * 37.00468 * 9 8 7 11 11 O 1.42895 * 110.85602 * 82.96352 * 10 9 8 12 12 C 1.50702 * 110.70612 * 206.14440 * 10 9 8 13 13 H 1.07996 * 120.00236 * 355.00461 * 12 10 9 14 14 C 1.37878 * 119.99692 * 174.99986 * 12 10 9 15 15 N 1.31518 * 120.00134 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00123 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47513 * 90.00318 * 16 14 12 18 18 H 1.48506 * 109.47263 * 210.00370 * 16 14 12 19 19 H 1.48498 * 109.47090 * 329.99934 * 16 14 12 20 20 C 1.47026 * 125.64285 * 180.02562 * 7 5 4 21 21 C 1.53000 * 109.47273 * 119.99766 * 2 1 3 22 22 H 1.09005 * 110.43576 * 60.70172 * 21 2 1 23 23 C 1.54807 * 110.48913 * 298.16004 * 21 2 1 24 24 C 1.55233 * 101.98818 * 220.51412 * 23 21 2 25 25 O 1.44383 * 103.56201 * 36.88144 * 24 23 21 26 26 C 1.43750 * 106.97500 * 320.01073 * 25 24 23 27 27 H 1.09000 * 109.46672 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47203 * 300.00134 * 1 2 3 29 29 H 1.08997 * 109.46862 * 59.99728 * 1 2 3 30 30 H 0.97003 * 120.00305 * 264.99656 * 4 2 1 31 31 H 1.09002 * 110.36926 * 274.69484 * 8 7 5 32 32 H 1.08995 * 110.36556 * 36.90768 * 8 7 5 33 33 H 1.09002 * 111.00852 * 155.13877 * 9 8 7 34 34 H 1.09004 * 111.00578 * 278.99532 * 9 8 7 35 35 H 0.96705 * 114.00065 * 184.90995 * 11 10 9 36 36 H 0.97000 * 120.00099 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.88266 * 300.48971 * 20 7 5 38 38 H 1.08997 * 109.88244 * 61.50329 * 20 7 5 39 39 H 1.08998 * 110.91241 * 338.63660 * 23 21 2 40 40 H 1.08998 * 110.91180 * 102.24308 * 23 21 2 41 41 H 1.08992 * 110.51788 * 278.38571 * 24 23 21 42 42 H 1.08997 * 110.77448 * 155.49835 * 24 23 21 43 43 H 1.09000 * 109.87596 * 267.08723 * 26 25 24 44 44 H 1.08994 * 109.87541 * 145.93727 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8575 1.1614 -2.4118 7 7 2.5960 -0.6537 -3.4576 8 6 2.9797 -2.0751 -3.5326 9 6 2.8118 -2.4556 -5.0248 10 6 3.2850 -1.1538 -5.7304 11 8 4.7096 -1.1220 -5.8372 12 6 2.6472 -1.0224 -7.0895 13 1 2.0288 -1.8193 -7.4752 14 6 2.8532 0.1154 -7.8405 15 7 3.6067 1.0858 -7.3710 16 14 2.0623 0.2787 -9.5248 17 1 0.7267 0.9127 -9.3852 18 1 2.9213 1.1208 -10.3957 19 1 1.9100 -1.0675 -10.1328 20 6 2.7839 -0.0440 -4.7823 21 6 2.0400 -0.7212 1.2493 22 1 1.6957 -1.7554 1.2590 23 6 1.5754 0.0166 2.5285 24 6 2.8389 -0.0681 3.4264 25 8 3.9291 0.0821 2.4918 26 6 3.5786 -0.6645 1.3145 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 2.2491 -1.6317 -1.1526 31 1 4.0165 -2.2050 -3.2223 32 1 2.3198 -2.6795 -2.9104 33 1 3.4506 -3.2989 -5.2873 34 1 1.7689 -2.6698 -5.2584 35 1 5.0583 -0.2971 -6.2021 36 1 3.7519 1.8861 -7.8995 37 1 1.8361 0.3534 -5.1453 38 1 3.5219 0.7557 -4.7210 39 1 1.3232 1.0541 2.3094 40 1 0.7327 -0.4980 2.9900 41 1 2.8901 -1.0368 3.9234 42 1 2.8474 0.7389 4.1590 43 1 3.9843 -1.6740 1.3813 44 1 3.9689 -0.1640 0.4284 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325977273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:34 Heat of formation + Delta-G solvation = -150.616210 kcal Electronic energy + Delta-G solvation = -25355.542493 eV Core-core repulsion = 21692.661882 eV Total energy + Delta-G solvation = -3662.880611 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.48748 -40.42357 -39.12789 -36.76584 -36.06908 -34.23120 -33.40703 -31.68435 -30.45567 -29.81497 -29.46867 -26.96793 -24.71166 -23.87890 -23.29118 -21.57536 -21.37200 -20.87898 -19.21956 -18.85073 -17.75057 -17.31170 -17.00631 -16.82174 -16.66753 -16.17353 -15.91498 -15.70934 -15.05350 -14.76489 -14.71704 -14.49822 -14.09344 -13.82796 -13.67139 -13.50996 -13.32612 -13.15437 -12.85428 -12.70671 -12.49864 -12.45831 -12.32673 -12.28604 -12.09034 -12.06032 -12.04146 -11.52657 -11.28356 -11.15865 -10.65907 -10.61751 -10.29221 -10.23578 -9.40524 -8.26314 -6.42329 1.40629 1.42613 1.52421 1.65329 2.15036 2.37585 3.00403 3.02065 3.04555 3.44521 3.70555 3.79773 3.88744 4.06459 4.17635 4.25892 4.27874 4.35876 4.37891 4.40701 4.52049 4.59551 4.72075 4.74139 4.81512 4.84547 4.88871 4.98808 5.03021 5.05684 5.13248 5.18881 5.25795 5.31554 5.36498 5.50493 5.56845 5.74491 5.95479 6.03679 6.18810 6.64779 7.07365 7.27212 7.34666 7.58312 8.79707 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.029539 B = 0.003368 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.673510 B = 8310.654105 C = 8552.042805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 H 0.054 0.946 4 N -0.724 5.724 5 C 0.711 3.289 6 O -0.645 6.645 7 N -0.636 5.636 8 C 0.108 3.892 9 C -0.110 4.110 10 C 0.233 3.767 11 O -0.587 6.587 12 C -0.557 4.557 13 H 0.068 0.932 14 C 0.024 3.976 15 N -0.916 5.916 16 Si 0.963 3.037 17 H -0.280 1.280 18 H -0.282 1.282 19 H -0.263 1.263 20 C 0.143 3.857 21 C -0.117 4.117 22 H 0.120 0.880 23 C -0.140 4.140 24 C 0.039 3.961 25 O -0.410 6.410 26 C 0.048 3.952 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.027 0.973 30 H 0.409 0.591 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.375 0.625 36 H 0.269 0.731 37 H 0.027 0.973 38 H 0.024 0.976 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.949 -8.741 19.747 22.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.063 3.937 3 H 0.072 0.928 4 N -0.381 5.381 5 C 0.413 3.587 6 O -0.527 6.527 7 N -0.373 5.373 8 C -0.014 4.014 9 C -0.148 4.148 10 C 0.192 3.808 11 O -0.394 6.394 12 C -0.595 4.595 13 H 0.086 0.914 14 C -0.177 4.177 15 N -0.556 5.556 16 Si 0.789 3.211 17 H -0.205 1.205 18 H -0.208 1.208 19 H -0.188 1.188 20 C 0.019 3.981 21 C -0.136 4.136 22 H 0.138 0.862 23 C -0.178 4.178 24 C -0.037 4.037 25 O -0.330 6.330 26 C -0.029 4.029 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.047 0.953 30 H 0.246 0.754 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.224 0.776 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.091 0.909 40 H 0.133 0.867 41 H 0.097 0.903 42 H 0.119 0.881 43 H 0.096 0.904 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.969 -8.174 20.027 22.194 hybrid contribution -0.139 1.011 -1.687 1.972 sum -5.108 -7.163 18.340 20.341 Atomic orbital electron populations 1.22157 0.94178 1.03143 1.01990 1.20886 0.94693 0.95739 0.82336 0.92753 1.45043 1.71524 1.13969 1.07585 1.15757 0.78203 0.84154 0.80625 1.90848 1.59849 1.16842 1.85204 1.47906 1.67717 1.12579 1.09066 1.22397 1.00686 0.80247 0.98084 1.22763 1.01732 0.97198 0.93065 1.19778 0.78854 0.90615 0.91530 1.86086 1.23006 1.43422 1.86926 1.21848 1.31643 1.03508 1.02500 0.91386 1.25840 0.94912 0.94985 1.01953 1.69817 1.38745 1.07692 1.39296 0.85470 0.78075 0.78381 0.79204 1.20542 1.20786 1.18768 1.22308 0.98120 0.97094 0.80552 1.22823 0.94805 1.02188 0.93822 0.86221 1.23234 0.99334 1.01660 0.93592 1.23844 0.84407 1.03034 0.92391 1.88872 1.43536 1.73027 1.27555 1.23279 0.94800 0.96782 0.88050 0.90425 0.89461 0.95327 0.75442 0.91141 0.87836 0.89054 0.89809 0.77641 0.92161 0.95475 0.95739 0.90890 0.86741 0.90273 0.88076 0.90399 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 9.28 71.98 0.67 -2.56 16 2 C 0.17 3.93 1.82 44.99 0.08 4.01 16 3 H 0.05 1.69 7.58 -2.39 -0.02 1.67 16 4 N -0.72 -19.71 4.55 -457.82 -2.09 -21.80 16 5 C 0.71 28.64 8.45 179.05 1.51 30.16 16 6 O -0.64 -32.47 16.33 -3.98 -0.07 -32.53 16 7 N -0.64 -26.13 3.33 -829.78 -2.76 -28.89 16 8 C 0.11 3.40 6.56 86.85 0.57 3.97 16 9 C -0.11 -4.08 6.26 32.09 0.20 -3.88 16 10 C 0.23 11.30 0.85 -10.25 -0.01 11.29 16 11 O -0.59 -29.79 13.08 -148.98 -1.95 -31.74 16 12 C -0.56 -29.39 8.12 25.60 0.21 -29.18 16 13 H 0.07 3.47 7.78 -2.91 -0.02 3.45 16 14 C 0.02 1.27 5.28 84.65 0.45 1.72 16 15 N -0.92 -50.89 10.97 21.45 0.24 -50.66 16 16 Si 0.96 42.55 29.54 68.60 2.03 44.58 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 20 C 0.14 7.29 5.24 86.73 0.45 7.75 16 21 C -0.12 -1.79 2.67 -9.81 -0.03 -1.81 16 22 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 23 C -0.14 -1.69 5.72 31.98 0.18 -1.51 16 24 C 0.04 0.54 7.72 72.75 0.56 1.10 16 25 O -0.41 -9.39 11.52 -148.98 -1.72 -11.10 16 26 C 0.05 0.95 7.17 72.35 0.52 1.47 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.09 1.37 7.18 -2.39 -0.02 1.35 16 29 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.41 8.29 7.08 -92.71 -0.66 7.63 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.10 2.29 7.29 -2.39 -0.02 2.28 16 33 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.08 2.98 8.04 -2.38 -0.02 2.96 16 35 H 0.37 20.02 7.45 -74.05 -0.55 19.47 16 36 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 37 H 0.03 1.53 7.81 -2.39 -0.02 1.52 16 38 H 0.02 1.39 7.93 -2.39 -0.02 1.38 16 39 H 0.07 1.05 7.65 -2.39 -0.02 1.04 16 40 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.06 1.52 7.47 -2.39 -0.02 1.51 16 Total: -1.00 -72.09 350.63 -1.14 -73.24 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: -0.20 Total: 36.38 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 5.37 Total: 22.53 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -4.61 Total: -101.35 kcal Atomic # 8 Polarization: -71.65 SS G_CDS: -3.73 Total: -75.38 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -72.09 -1.14 -73.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325977273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.377 kcal (2) G-P(sol) polarization free energy of solvation -72.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds