Wall clock time and date at job start Tue Mar 31 2020 03:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50692 * 119.99995 * 2 1 4 4 C 1.50701 * 119.99699 * 179.97438 * 2 1 3 5 5 H 1.08999 * 110.33273 * 346.30537 * 4 2 1 6 6 O 1.44424 * 110.36674 * 223.93746 * 4 2 1 7 7 C 1.44434 * 105.27408 * 200.65702 * 6 4 2 8 8 C 1.54484 * 104.79964 * 40.51206 * 7 6 4 9 9 C 1.54473 * 110.37146 * 108.56006 * 4 2 1 10 10 H 1.09001 * 110.51038 * 261.58837 * 9 4 2 11 11 C 1.50698 * 110.51486 * 24.15832 * 9 4 2 12 12 O 1.21283 * 119.99868 * 86.35254 * 11 9 4 13 13 N 1.34771 * 120.00199 * 266.35696 * 11 9 4 14 14 C 1.46504 * 120.00006 * 179.97438 * 13 11 9 15 15 C 1.53006 * 109.46959 * 179.97438 * 14 13 11 16 16 H 1.08997 * 109.46595 * 65.00040 * 15 14 13 17 17 C 1.53006 * 109.46799 * 184.99800 * 15 14 13 18 18 O 1.42903 * 109.47004 * 55.00093 * 17 15 14 19 19 N 1.46494 * 109.47071 * 304.99945 * 15 14 13 20 20 C 1.36941 * 119.99612 * 155.00188 * 19 15 14 21 21 H 1.07999 * 119.99870 * 0.02562 * 20 19 15 22 22 C 1.38808 * 119.99652 * 179.97438 * 20 19 15 23 23 N 1.31625 * 120.00534 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99788 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47147 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47332 * 120.00387 * 24 22 20 27 27 H 1.48502 * 109.47306 * 240.00030 * 24 22 20 28 28 H 1.07995 * 119.99987 * 179.97438 * 1 2 3 29 29 H 1.07998 * 119.99935 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47190 * 275.30919 * 3 2 1 31 31 H 1.09000 * 109.47396 * 35.30623 * 3 2 1 32 32 H 1.09003 * 109.47397 * 155.31081 * 3 2 1 33 33 H 1.08996 * 110.37404 * 159.34663 * 7 6 4 34 34 H 1.08997 * 110.36751 * 281.57498 * 7 6 4 35 35 H 1.09000 * 110.50877 * 217.37531 * 8 7 6 36 36 H 1.08996 * 110.51069 * 94.66630 * 8 7 6 37 37 H 0.97008 * 120.00258 * 359.97438 * 13 11 9 38 38 H 1.09008 * 109.46872 * 59.99746 * 14 13 11 39 39 H 1.08997 * 109.47351 * 299.99813 * 14 13 11 40 40 H 1.08992 * 109.46882 * 175.00108 * 17 15 14 41 41 H 1.09001 * 109.47305 * 295.00568 * 17 15 14 42 42 H 0.96693 * 113.99982 * 179.97438 * 18 17 15 43 43 H 0.96996 * 120.00451 * 334.99411 * 19 15 14 44 44 H 0.96994 * 119.99836 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3928 -2.1295 0.2429 6 8 3.1592 -1.2526 0.9400 7 6 4.0713 -2.2904 0.5192 8 6 4.0827 -2.2041 -1.0232 9 6 2.7315 -1.5410 -1.3721 10 1 2.1232 -2.2076 -1.9834 11 6 2.9542 -0.2311 -2.0832 12 8 3.9617 0.4100 -1.8717 13 7 2.0336 0.2280 -2.9539 14 6 2.2499 1.5017 -3.6447 15 6 1.0648 1.7880 -4.5692 16 1 0.1648 1.9331 -3.9718 17 6 1.3466 3.0530 -5.3825 18 8 2.5877 2.9071 -6.0756 19 7 0.8702 0.6561 -5.4785 20 6 -0.3633 0.4212 -6.0251 21 1 -1.1924 1.0707 -5.7861 22 6 -0.5476 -0.6511 -6.8870 23 7 0.4632 -1.4418 -7.1795 24 14 -2.2303 -0.9720 -7.6321 25 1 -3.1895 0.0534 -7.1484 26 1 -2.1375 -0.9031 -9.1126 27 1 -2.7015 -2.3210 -7.2280 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 2.1628 1.6672 -1.0232 31 1 1.5189 2.0390 0.5939 32 1 3.0538 1.1529 0.4293 33 1 5.0686 -2.1034 0.9172 34 1 3.7110 -3.2666 0.8437 35 1 4.1436 -3.2005 -1.4609 36 1 4.9118 -1.5845 -1.3649 37 1 1.2279 -0.2850 -3.1233 38 1 3.1648 1.4444 -4.2345 39 1 2.3403 2.3024 -2.9107 40 1 0.5438 3.2077 -6.1034 41 1 1.4034 3.9108 -4.7123 42 1 2.8304 3.6733 -6.6133 43 1 1.6149 0.0730 -5.6935 44 1 0.3344 -2.1909 -7.7822 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486044312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:34 Heat of formation + Delta-G solvation = -98.064189 kcal Electronic energy + Delta-G solvation = -25786.573485 eV Core-core repulsion = 22125.971701 eV Total energy + Delta-G solvation = -3660.601784 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.61662 -38.33908 -37.01493 -35.12473 -34.82106 -33.40442 -32.22955 -31.27376 -28.96610 -28.16408 -27.17581 -25.40567 -23.75799 -23.30916 -21.90849 -20.11286 -19.86202 -18.65611 -17.56307 -16.96789 -16.60434 -16.32024 -15.89632 -15.67714 -15.21001 -14.93429 -14.42720 -13.99274 -13.85334 -13.61297 -13.34008 -13.18118 -12.97484 -12.84890 -12.45479 -12.28830 -11.93043 -11.83291 -11.55172 -11.39481 -11.31190 -11.10465 -10.92300 -10.88781 -10.80218 -10.55805 -10.09555 -9.90363 -9.81292 -9.44186 -9.32976 -9.03926 -8.99845 -8.49642 -7.05674 -5.84109 -3.14221 2.13170 2.97221 3.36444 3.42475 3.44931 3.59476 3.94393 4.41544 4.50249 4.74007 4.86351 4.91897 4.97542 5.04319 5.21572 5.23399 5.39567 5.44227 5.50955 5.53559 5.56887 5.65825 5.76518 5.78774 5.86840 5.91108 5.98406 6.04188 6.06396 6.11368 6.23409 6.39068 6.50622 6.58542 6.71799 6.75145 6.89956 6.97907 7.60643 8.01779 8.19448 8.33000 8.66463 9.45433 10.00918 10.37457 11.37565 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.015031 B = 0.004658 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.399822 B = 6009.392206 C = 6613.671893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.120 4.120 3 C -0.122 4.122 4 C 0.128 3.872 5 H 0.082 0.918 6 O -0.360 6.360 7 C 0.048 3.952 8 C -0.142 4.142 9 C -0.141 4.141 10 H 0.105 0.895 11 C 0.529 3.471 12 O -0.547 6.547 13 N -0.709 5.709 14 C 0.120 3.880 15 C 0.166 3.834 16 H 0.065 0.935 17 C 0.059 3.941 18 O -0.560 6.560 19 N -0.712 5.712 20 C -0.246 4.246 21 H 0.070 0.930 22 C -0.008 4.008 23 N -0.926 5.926 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.408 0.592 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.026 0.974 42 H 0.364 0.636 43 H 0.389 0.611 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.948 1.877 13.515 13.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.120 4.120 3 C -0.178 4.178 4 C 0.069 3.931 5 H 0.100 0.900 6 O -0.279 6.279 7 C -0.029 4.029 8 C -0.180 4.180 9 C -0.163 4.163 10 H 0.124 0.876 11 C 0.315 3.685 12 O -0.425 6.425 13 N -0.360 5.360 14 C -0.005 4.005 15 C 0.055 3.945 16 H 0.083 0.917 17 C -0.022 4.022 18 O -0.363 6.363 19 N -0.354 5.354 20 C -0.377 4.377 21 H 0.088 0.912 22 C -0.205 4.205 23 N -0.574 5.574 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.244 0.756 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.208 0.792 43 H 0.223 0.777 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.486 1.885 14.085 14.631 hybrid contribution -1.256 -0.253 -1.341 1.855 sum 2.230 1.631 12.743 13.040 Atomic orbital electron populations 1.23680 0.94724 1.02339 1.00847 1.21515 0.94974 0.94988 1.00556 1.21010 1.00660 0.93329 1.02850 1.21858 0.88955 0.95762 0.86491 0.89994 1.89171 1.32620 1.55283 1.50788 1.23392 0.94649 0.91184 0.93679 1.22945 0.97134 1.01521 0.96350 1.22746 0.99088 0.96691 0.97743 0.87645 1.19871 0.83089 0.86553 0.78996 1.90654 1.28356 1.58944 1.64569 1.45997 1.23567 1.23823 1.42663 1.21529 1.00113 0.84614 0.94200 1.20580 0.94916 0.88499 0.90497 0.91743 1.23037 0.85984 0.98164 0.95031 1.86571 1.39643 1.44232 1.65872 1.42366 1.10486 1.29679 1.52852 1.19259 0.87689 1.09144 1.21608 0.91174 1.24735 0.97287 0.98195 1.00244 1.69689 1.29595 1.18640 1.39433 0.86169 0.83680 0.77633 0.78935 1.20598 1.21908 1.21868 0.88256 0.87730 0.90474 0.92544 0.90801 0.88904 0.92304 0.90010 0.88713 0.75557 0.90714 0.92303 0.93381 0.95595 0.79184 0.77698 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 13.92 29.01 0.40 -1.70 16 2 C -0.12 -1.59 4.32 -101.07 -0.44 -2.03 16 3 C -0.12 -1.74 8.17 36.00 0.29 -1.44 16 4 C 0.13 1.65 3.44 -27.11 -0.09 1.55 16 5 H 0.08 0.91 7.90 -51.93 -0.41 0.50 16 6 O -0.36 -5.02 10.53 -35.23 -0.37 -5.39 16 7 C 0.05 0.53 7.63 37.94 0.29 0.82 16 8 C -0.14 -1.72 6.60 -25.16 -0.17 -1.89 16 9 C -0.14 -1.92 3.42 -90.21 -0.31 -2.23 16 10 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 11 C 0.53 8.76 3.94 -10.99 -0.04 8.72 16 12 O -0.55 -10.49 14.34 5.55 0.08 -10.41 16 13 N -0.71 -11.85 4.74 -60.29 -0.29 -12.14 16 14 C 0.12 2.10 4.85 -4.04 -0.02 2.08 16 15 C 0.17 3.10 2.84 -67.93 -0.19 2.91 16 16 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 17 C 0.06 1.02 6.86 37.16 0.25 1.27 16 18 O -0.56 -9.95 12.64 -35.23 -0.45 -10.40 16 19 N -0.71 -16.63 4.51 -53.42 -0.24 -16.87 16 20 C -0.25 -6.35 9.93 -15.06 -0.15 -6.50 16 21 H 0.07 1.76 7.83 -52.49 -0.41 1.34 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.93 -26.93 13.06 55.49 0.72 -26.20 16 24 Si 0.90 21.43 29.55 -169.99 -5.02 16.41 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H 0.10 1.03 7.91 -52.49 -0.42 0.62 16 29 H 0.10 1.15 8.05 -52.49 -0.42 0.72 16 30 H 0.08 1.20 4.42 -51.93 -0.23 0.97 16 31 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.07 1.17 7.18 -51.93 -0.37 0.80 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.34 6.89 -51.93 -0.36 0.98 16 37 H 0.41 6.98 8.14 -40.82 -0.33 6.65 16 38 H 0.07 1.50 7.39 -51.92 -0.38 1.11 16 39 H 0.06 0.96 6.92 -51.93 -0.36 0.60 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.36 4.66 9.12 45.56 0.42 5.08 16 43 H 0.39 10.13 7.80 -40.82 -0.32 9.82 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 355.01 15.07 5.35 5.35 Total: -1.00 -31.67 355.01 -6.59 -38.25 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -6.11 Total: 20.15 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -0.26 Total: 1.24 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.20 Total: -55.21 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.74 Total: -26.20 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.67 -6.59 -38.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486044312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.810 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds