Wall clock time and date at job start Tue Mar 31 2020 03:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47090 * 2 1 4 4 H 1.09004 * 110.33440 * 52.74432 * 3 2 1 5 5 C 1.54472 * 110.37375 * 174.99848 * 3 2 1 6 6 C 1.54509 * 104.18983 * 142.74096 * 5 3 2 7 7 C 1.54806 * 103.90958 * 0.10019 * 6 5 3 8 8 H 1.08999 * 110.43499 * 94.77692 * 7 6 5 9 9 C 1.50695 * 110.40379 * 217.07196 * 7 6 5 10 10 O 1.21282 * 119.99572 * 111.85247 * 9 7 6 11 11 N 1.34769 * 119.99936 * 291.85087 * 9 7 6 12 12 C 1.46503 * 119.99874 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47134 * 180.02562 * 12 11 9 14 14 O 1.42897 * 112.94147 * 55.33459 * 13 12 11 15 15 C 1.53944 * 113.73910 * 283.73942 * 13 12 11 16 16 N 1.47815 * 86.03380 * 222.08145 * 15 13 12 17 17 C 1.36933 * 134.45667 * 204.64120 * 16 15 13 18 18 H 1.08001 * 120.00362 * 173.35306 * 17 16 15 19 19 C 1.38817 * 120.00066 * 353.35264 * 17 16 15 20 20 N 1.31619 * 119.99948 * 5.06700 * 19 17 16 21 21 Si 1.86798 * 120.00004 * 185.06126 * 19 17 16 22 22 H 1.48495 * 109.47241 * 94.99227 * 21 19 17 23 23 H 1.48504 * 109.47339 * 214.99122 * 21 19 17 24 24 H 1.48501 * 109.47294 * 334.99024 * 21 19 17 25 25 C 1.47575 * 91.04954 * 24.55438 * 16 15 13 26 26 O 1.44426 * 110.37139 * 290.38193 * 3 2 1 27 27 H 1.09003 * 109.47266 * 300.00591 * 1 2 3 28 28 H 1.09002 * 109.46740 * 60.00288 * 1 2 3 29 29 H 1.09000 * 109.47055 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47069 * 239.99825 * 2 1 3 31 31 H 1.09002 * 109.46740 * 119.99712 * 2 1 3 32 32 H 1.09000 * 110.51495 * 261.45514 * 5 3 2 33 33 H 1.09005 * 110.51059 * 24.02436 * 5 3 2 34 34 H 1.09000 * 110.51742 * 118.70838 * 6 5 3 35 35 H 1.09001 * 110.51114 * 241.42788 * 6 5 3 36 36 H 0.97000 * 120.00571 * 0.02562 * 11 9 7 37 37 H 1.09003 * 109.47260 * 299.99906 * 12 11 9 38 38 H 1.09004 * 109.47482 * 60.00199 * 12 11 9 39 39 H 0.96699 * 114.00024 * 309.66123 * 14 13 12 40 40 H 1.08992 * 113.77499 * 336.35010 * 15 13 12 41 41 H 1.08999 * 113.76669 * 107.74785 * 15 13 12 42 42 H 0.96997 * 120.00247 * 179.97438 * 20 19 17 43 43 H 1.09011 * 113.76776 * 221.14769 * 25 16 15 44 44 H 1.08998 * 113.87361 * 89.76566 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5829 2.0058 0.8135 5 6 3.5793 1.4687 0.1262 6 6 4.0140 2.6403 -0.7824 7 6 2.6809 3.1859 -1.3494 8 1 2.3221 4.0182 -0.7438 9 6 2.8571 3.6185 -2.7821 10 8 2.3126 3.0016 -3.6731 11 7 3.6198 4.6908 -3.0733 12 6 3.7907 5.1116 -4.4661 13 6 4.6963 6.3438 -4.5192 14 8 5.9574 6.1361 -3.8802 15 6 3.9945 7.6472 -4.0968 16 7 4.6979 8.2742 -5.2357 17 6 5.0917 9.5513 -5.5342 18 1 5.6992 9.7390 -6.4072 19 6 4.7100 10.6047 -4.7147 20 7 4.0551 10.3661 -3.5982 21 14 5.1261 12.3609 -5.1964 22 1 3.9730 12.9646 -5.9113 23 1 5.4207 13.1527 -3.9750 24 1 6.3154 12.3618 -6.0856 25 6 4.8073 6.9715 -5.9204 26 8 1.7630 2.0737 -1.2692 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8748 1.6561 1.1586 33 1 4.0076 0.5311 -0.2283 34 1 4.5242 3.4070 -0.1994 35 1 4.6551 2.2816 -1.5877 36 1 4.0557 5.1839 -2.3607 37 1 4.2455 4.3021 -5.0371 38 1 2.8184 5.3562 -4.8938 39 1 5.8907 5.7692 -2.9880 40 1 2.9109 7.6198 -4.2109 41 1 4.3116 8.0214 -3.1234 42 1 3.7888 11.1022 -3.0254 43 1 5.7721 6.8070 -6.4003 44 1 3.9638 6.7435 -6.5720 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672084740.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:33 Heat of formation + Delta-G solvation = -105.358348 kcal Electronic energy + Delta-G solvation = -24624.326749 eV Core-core repulsion = 20963.408666 eV Total energy + Delta-G solvation = -3660.918083 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50502 -40.57846 -39.43159 -36.49289 -35.35513 -34.55732 -34.02462 -33.05977 -30.72447 -29.44155 -27.55699 -26.75275 -25.23789 -23.66783 -22.79275 -21.95140 -21.51979 -20.96623 -19.10330 -18.58027 -17.75122 -17.42623 -17.27036 -16.70846 -16.57274 -16.05832 -15.79388 -15.60958 -15.12040 -14.83483 -14.58752 -14.51938 -14.43356 -14.25547 -13.98155 -13.88652 -13.43755 -12.99326 -12.88044 -12.84459 -12.66581 -12.56439 -12.36271 -12.21467 -11.88980 -11.78482 -11.69609 -11.50178 -11.42466 -10.98323 -10.96587 -10.73709 -10.63326 -10.20804 -8.93480 -7.93557 -5.25086 1.45290 1.47032 1.49159 1.55834 1.81903 2.45818 3.00201 3.05431 3.25048 3.33830 3.45654 3.57041 3.65016 3.88625 3.92048 3.95612 4.16829 4.20727 4.34343 4.36572 4.39819 4.60446 4.68193 4.73377 4.78213 4.78634 4.91899 4.94758 4.95641 5.04478 5.08864 5.17335 5.17458 5.22275 5.26025 5.30437 5.43093 5.48747 5.85009 5.90391 6.41684 6.84002 6.90499 7.13480 7.57800 8.51941 9.23895 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.030764 B = 0.002788 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.929183 B =10039.525083 C =10225.122186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.061 3.939 4 H 0.085 0.915 5 C -0.144 4.144 6 C -0.140 4.140 7 C 0.056 3.944 8 H 0.117 0.883 9 C 0.518 3.482 10 O -0.573 6.573 11 N -0.709 5.709 12 C 0.118 3.882 13 C 0.101 3.899 14 O -0.538 6.538 15 C 0.147 3.853 16 N -0.636 5.636 17 C -0.235 4.235 18 H 0.081 0.919 19 C -0.065 4.065 20 N -0.950 5.950 21 Si 0.978 3.022 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.269 1.269 25 C 0.128 3.872 26 O -0.377 6.377 27 H 0.063 0.937 28 H 0.036 0.964 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.072 0.928 36 H 0.413 0.587 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.384 0.616 40 H 0.026 0.974 41 H 0.049 0.951 42 H 0.249 0.751 43 H 0.058 0.942 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 -19.741 12.168 23.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.004 3.996 4 H 0.103 0.897 5 C -0.182 4.182 6 C -0.178 4.178 7 C -0.005 4.005 8 H 0.134 0.866 9 C 0.304 3.696 10 O -0.451 6.451 11 N -0.363 5.363 12 C -0.007 4.007 13 C 0.058 3.942 14 O -0.345 6.345 15 C 0.021 3.979 16 N -0.363 5.363 17 C -0.363 4.363 18 H 0.099 0.901 19 C -0.258 4.258 20 N -0.598 5.598 21 Si 0.806 3.194 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.194 1.194 25 C 0.003 3.997 26 O -0.296 6.296 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.136 0.864 35 H 0.090 0.910 36 H 0.250 0.750 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.234 0.766 40 H 0.044 0.956 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.358 -19.679 10.835 22.506 hybrid contribution -0.115 1.350 0.380 1.408 sum -1.473 -18.329 11.216 21.538 Atomic orbital electron populations 1.21741 0.95637 1.02010 1.01554 1.21625 0.96517 0.93997 1.03245 1.23411 0.95636 0.94926 0.85622 0.89735 1.23011 0.94383 0.98951 1.01820 1.23020 0.94861 0.99785 1.00131 1.23050 0.92696 0.92709 0.92035 0.86552 1.20805 0.77706 0.79640 0.91417 1.90701 1.48706 1.55581 1.50139 1.45674 1.51126 1.30274 1.09272 1.21739 0.99614 0.96053 0.83271 1.23107 0.84052 0.91306 0.95710 1.86574 1.27488 1.86668 1.33752 1.22814 0.93809 0.88198 0.93045 1.46086 1.66457 1.03216 1.20520 1.19367 1.25746 0.82706 1.08486 0.90096 1.25621 1.00996 1.01694 0.97512 1.69975 1.45280 1.31067 1.13489 0.85067 0.77788 0.79579 0.76948 1.21507 1.21850 1.19363 1.22788 1.00287 0.83751 0.92895 1.89267 1.57613 1.43446 1.39289 0.91839 0.94500 0.91764 0.92423 0.88028 0.87435 0.90290 0.86354 0.90969 0.74967 0.90243 0.91164 0.76648 0.95645 0.93273 0.94174 0.92330 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.85 71.98 0.71 -1.61 16 2 C -0.12 -1.64 5.56 30.59 0.17 -1.47 16 3 C 0.06 0.95 3.25 31.09 0.10 1.05 16 4 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 5 C -0.14 -1.60 6.62 31.61 0.21 -1.39 16 6 C -0.14 -1.84 6.64 31.72 0.21 -1.63 16 7 C 0.06 1.13 3.71 30.46 0.11 1.24 16 8 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 9 C 0.52 14.23 7.08 87.66 0.62 14.85 16 10 O -0.57 -21.54 16.56 15.31 0.25 -21.29 16 11 N -0.71 -17.06 5.33 -463.05 -2.47 -19.53 16 12 C 0.12 3.46 5.26 86.38 0.45 3.91 16 13 C 0.10 3.53 1.49 -10.13 -0.02 3.51 16 14 O -0.54 -17.92 13.50 -148.98 -2.01 -19.93 16 15 C 0.15 6.66 6.84 86.44 0.59 7.25 16 16 N -0.64 -32.81 3.70 -719.68 -2.66 -35.48 16 17 C -0.23 -13.37 10.70 84.04 0.90 -12.47 16 18 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 19 C -0.07 -3.71 5.50 84.86 0.47 -3.25 16 20 N -0.95 -56.51 11.51 21.65 0.25 -56.26 16 21 Si 0.98 45.86 29.56 68.60 2.03 47.89 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 25 C 0.13 5.18 8.34 86.49 0.72 5.90 16 26 O -0.38 -9.40 10.39 -130.63 -1.36 -10.76 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.04 0.75 8.01 -2.39 -0.02 0.73 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 0.89 7.87 -2.38 -0.02 0.87 16 34 H 0.12 0.85 8.14 -2.39 -0.02 0.84 16 35 H 0.07 1.11 7.88 -2.39 -0.02 1.09 16 36 H 0.41 7.62 7.42 -92.71 -0.69 6.93 16 37 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.07 2.25 8.09 -2.38 -0.02 2.23 16 39 H 0.38 8.80 7.73 -74.06 -0.57 8.23 16 40 H 0.03 1.21 8.06 -2.39 -0.02 1.19 16 41 H 0.05 2.45 7.37 -2.39 -0.02 2.43 16 42 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 43 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 44 H 0.07 2.54 8.10 -2.39 -0.02 2.52 16 Total: -1.00 -78.77 360.78 -0.98 -79.75 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.26 Total: 19.70 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: 5.25 Total: 15.90 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -4.88 Total: -111.26 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -3.12 Total: -51.98 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -78.77 -0.98 -79.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672084740.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.609 kcal (2) G-P(sol) polarization free energy of solvation -78.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds