Wall clock time and date at job start Tue Mar 31 2020 03:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47296 * 2 1 4 4 H 1.08997 * 109.89771 * 54.06186 * 3 2 1 5 5 C 1.54379 * 109.83036 * 174.99942 * 3 2 1 6 6 C 1.55315 * 102.43731 * 140.96714 * 5 3 2 7 7 C 1.54939 * 100.93987 * 325.76669 * 6 5 3 8 8 H 1.09004 * 110.31372 * 277.42849 * 7 6 5 9 9 C 1.50707 * 110.30816 * 155.35894 * 7 6 5 10 10 O 1.21279 * 119.99847 * 244.99748 * 9 7 6 11 11 N 1.34778 * 120.00030 * 64.99979 * 9 7 6 12 12 C 1.46496 * 119.99972 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.46840 * 179.97438 * 12 11 9 14 14 O 1.42898 * 112.94204 * 53.40879 * 13 12 11 15 15 C 1.53943 * 113.74362 * 281.67294 * 13 12 11 16 16 N 1.47575 * 86.11798 * 222.05131 * 15 13 12 17 17 C 1.36938 * 134.48948 * 204.63936 * 16 15 13 18 18 H 1.08001 * 119.99929 * 173.48176 * 17 16 15 19 19 C 1.38808 * 120.00327 * 353.48914 * 17 16 15 20 20 N 1.31622 * 119.99868 * 5.05612 * 19 17 16 21 21 Si 1.86798 * 120.00235 * 185.06667 * 19 17 16 22 22 H 1.48494 * 109.47538 * 94.97904 * 21 19 17 23 23 H 1.48501 * 109.47344 * 214.98684 * 21 19 17 24 24 H 1.48503 * 109.47010 * 334.97900 * 21 19 17 25 25 C 1.47579 * 91.01756 * 24.64109 * 16 15 13 26 26 O 1.43645 * 105.14149 * 36.44496 * 7 6 5 27 27 H 1.08996 * 109.47201 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46930 * 300.00257 * 1 2 3 29 29 H 1.08999 * 109.46965 * 60.00121 * 1 2 3 30 30 H 1.08992 * 109.46875 * 239.99119 * 2 1 3 31 31 H 1.08999 * 109.46965 * 119.99879 * 2 1 3 32 32 H 1.09000 * 110.84891 * 22.68145 * 5 3 2 33 33 H 1.08995 * 110.85025 * 259.26226 * 5 3 2 34 34 H 1.08995 * 111.12031 * 83.69059 * 6 5 3 35 35 H 1.08994 * 111.12274 * 207.80353 * 6 5 3 36 36 H 0.97000 * 119.99577 * 359.97438 * 11 9 7 37 37 H 1.08992 * 109.47137 * 300.00145 * 12 11 9 38 38 H 1.09002 * 109.47047 * 60.00010 * 12 11 9 39 39 H 0.96690 * 114.00626 * 309.66363 * 14 13 12 40 40 H 1.09004 * 113.77291 * 336.35494 * 15 13 12 41 41 H 1.09001 * 113.76790 * 107.74491 * 15 13 12 42 42 H 0.97003 * 120.00113 * 180.02562 * 20 19 17 43 43 H 1.08997 * 113.76792 * 221.06138 * 25 16 15 44 44 H 1.09002 * 113.86933 * 89.66996 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5966 1.9927 0.8298 5 6 3.5786 1.4539 0.1266 6 6 3.9846 2.6063 -0.8324 7 6 2.9077 2.4626 -1.9371 8 1 3.1970 1.6899 -2.6493 9 6 2.7069 3.7774 -2.6459 10 8 1.6434 4.3545 -2.5633 11 7 3.7091 4.3117 -3.3715 12 6 3.5137 5.5895 -4.0609 13 6 4.7956 5.9686 -4.8052 14 8 5.2608 4.9350 -5.6755 15 6 5.8901 6.5555 -3.8955 16 7 6.1203 7.5360 -4.9741 17 6 7.1862 8.3032 -5.3622 18 1 7.1321 8.8817 -6.2725 19 6 8.3361 8.3373 -4.5855 20 7 8.4412 7.5572 -3.5306 21 14 9.7345 9.4904 -5.0374 22 1 9.6031 10.7534 -4.2676 23 1 11.0323 8.8456 -4.7129 24 1 9.6800 9.7887 -6.4911 25 6 4.7406 7.3577 -5.4665 26 8 1.7084 2.0813 -1.2446 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.0022 0.5060 -0.2051 33 1 3.8821 1.6756 1.1497 34 1 3.9119 3.5740 -0.3362 35 1 4.9850 2.4481 -1.2350 36 1 4.5598 3.8502 -3.4371 37 1 2.6937 5.4964 -4.7729 38 1 3.2753 6.3633 -3.3312 39 1 5.3249 4.0664 -5.2556 40 1 5.5068 6.9965 -2.9753 41 1 6.7301 5.8814 -3.7278 42 1 9.2447 7.5812 -2.9876 43 1 4.6629 7.3241 -6.5532 44 1 4.0181 8.0337 -5.0091 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672084741.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:37 Heat of formation + Delta-G solvation = -105.371210 kcal Electronic energy + Delta-G solvation = -24692.188500 eV Core-core repulsion = 21031.269860 eV Total energy + Delta-G solvation = -3660.918640 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.51055 -40.59497 -39.43312 -36.51028 -35.34263 -34.49124 -34.02671 -33.09517 -30.72886 -29.47499 -27.55702 -26.74914 -25.20297 -23.68331 -22.81314 -22.05557 -21.31009 -20.92268 -19.18279 -18.67536 -18.05596 -17.34707 -16.97615 -16.90441 -16.41749 -16.06944 -15.73518 -15.58555 -15.14130 -14.97188 -14.72311 -14.51750 -14.20989 -14.02938 -13.90967 -13.86322 -13.41935 -13.05025 -12.96435 -12.86172 -12.76378 -12.56125 -12.39226 -12.20976 -11.87269 -11.79207 -11.76909 -11.58889 -11.42557 -11.00591 -10.96236 -10.73549 -10.40355 -10.18889 -8.93108 -7.93372 -5.24889 1.45552 1.47132 1.51743 1.55937 1.81916 2.45986 2.92374 3.05202 3.25459 3.34277 3.42942 3.56109 3.70310 3.77785 3.89246 4.04239 4.11730 4.23667 4.32240 4.37230 4.48095 4.56490 4.68350 4.74260 4.78463 4.84817 4.88542 4.94656 4.97268 5.00452 5.10231 5.15226 5.17597 5.25803 5.30986 5.35411 5.44263 5.49172 5.91067 5.96512 6.44010 6.83794 6.91154 7.15542 7.58000 8.52237 9.23982 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.028675 B = 0.002940 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.211655 B = 9522.269883 C =10143.097087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.066 3.934 4 H 0.074 0.926 5 C -0.140 4.140 6 C -0.146 4.146 7 C 0.066 3.934 8 H 0.126 0.874 9 C 0.511 3.489 10 O -0.574 6.574 11 N -0.709 5.709 12 C 0.118 3.882 13 C 0.100 3.900 14 O -0.539 6.539 15 C 0.149 3.851 16 N -0.636 5.636 17 C -0.235 4.235 18 H 0.081 0.919 19 C -0.064 4.064 20 N -0.949 5.949 21 Si 0.978 3.022 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.270 1.270 25 C 0.127 3.873 26 O -0.381 6.381 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.413 0.587 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.384 0.616 40 H 0.026 0.974 41 H 0.049 0.951 42 H 0.249 0.751 43 H 0.058 0.942 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.058 -17.748 7.603 21.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C 0.010 3.990 4 H 0.091 0.909 5 C -0.177 4.177 6 C -0.183 4.183 7 C 0.005 3.995 8 H 0.143 0.857 9 C 0.298 3.702 10 O -0.452 6.452 11 N -0.364 5.364 12 C -0.007 4.007 13 C 0.057 3.943 14 O -0.345 6.345 15 C 0.023 3.977 16 N -0.362 5.362 17 C -0.363 4.363 18 H 0.098 0.902 19 C -0.258 4.258 20 N -0.597 5.597 21 Si 0.806 3.194 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.194 1.194 25 C 0.002 3.998 26 O -0.300 6.300 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.137 0.863 36 H 0.250 0.750 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.233 0.767 40 H 0.044 0.956 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.702 -16.681 7.157 21.071 hybrid contribution 1.206 0.451 0.344 1.333 sum -9.496 -16.229 7.501 20.244 Atomic orbital electron populations 1.21724 0.96077 1.01804 1.01328 1.21887 0.96356 0.94580 1.03589 1.23181 0.96032 0.94131 0.85703 0.90851 1.23189 0.93397 0.99561 1.01581 1.23305 0.99484 1.00238 0.95317 1.22943 0.86938 0.93109 0.96464 0.85706 1.21103 0.83244 0.87392 0.78447 1.90695 1.27958 1.63806 1.62789 1.45693 1.16547 1.23200 1.50953 1.21724 0.97219 0.85892 0.95853 1.23122 0.91320 0.88760 0.91061 1.86575 1.88733 1.20198 1.39035 1.22770 0.94372 0.90072 0.90506 1.46034 1.07582 1.49130 1.33488 1.19359 0.92093 1.19851 1.05027 0.90152 1.25610 1.00866 1.01670 0.97609 1.69976 1.28576 1.41758 1.19422 0.85072 0.78278 0.78157 0.77906 1.21485 1.21828 1.19433 1.22798 0.86917 0.91190 0.98900 1.88620 1.28673 1.78401 1.34291 0.91637 0.92895 0.94208 0.91071 0.88733 0.87835 0.88314 0.91374 0.86326 0.75012 0.90409 0.91138 0.76670 0.95614 0.93247 0.94159 0.92404 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.83 71.98 0.71 -1.60 16 2 C -0.13 -1.62 5.51 30.59 0.17 -1.45 16 3 C 0.07 1.10 3.53 31.06 0.11 1.21 16 4 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 5 C -0.14 -1.58 6.53 31.86 0.21 -1.37 16 6 C -0.15 -2.17 6.55 32.05 0.21 -1.96 16 7 C 0.07 1.31 3.86 30.51 0.12 1.43 16 8 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 9 C 0.51 13.95 7.19 87.66 0.63 14.58 16 10 O -0.57 -21.51 16.55 15.48 0.26 -21.25 16 11 N -0.71 -16.94 5.32 -463.07 -2.46 -19.40 16 12 C 0.12 3.46 5.28 86.38 0.46 3.92 16 13 C 0.10 3.50 1.52 -10.13 -0.02 3.48 16 14 O -0.54 -18.08 13.51 -148.98 -2.01 -20.09 16 15 C 0.15 6.68 6.83 86.48 0.59 7.27 16 16 N -0.64 -32.69 3.69 -720.31 -2.66 -35.35 16 17 C -0.24 -13.34 10.70 84.03 0.90 -12.45 16 18 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 19 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 20 N -0.95 -56.06 11.51 21.65 0.25 -55.81 16 21 Si 0.98 45.66 29.56 68.60 2.03 47.69 16 22 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 C 0.13 5.15 8.34 86.48 0.72 5.87 16 26 O -0.38 -9.34 9.95 -130.48 -1.30 -10.64 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.04 0.78 7.91 -2.39 -0.02 0.76 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 0.76 7.85 -2.39 -0.02 0.74 16 33 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 1.28 8.05 -2.39 -0.02 1.26 16 35 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.41 7.47 7.31 -92.71 -0.68 6.79 16 37 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.07 2.24 8.04 -2.39 -0.02 2.22 16 39 H 0.38 8.90 7.61 -74.06 -0.56 8.33 16 40 H 0.03 1.21 8.03 -2.38 -0.02 1.19 16 41 H 0.05 2.44 7.35 -2.39 -0.02 2.43 16 42 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.07 2.55 8.10 -2.39 -0.02 2.53 16 Total: -1.00 -78.07 360.37 -0.87 -78.94 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -0.24 Total: 20.16 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 5.27 Total: 15.74 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -4.88 Total: -110.56 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -3.05 Total: -51.98 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -78.07 -0.87 -78.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672084741.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.429 kcal (2) G-P(sol) polarization free energy of solvation -78.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds